Wall clock time and date at job start Tue Mar 31 2020 11:10:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31507 * 1
3 3 Si 1.86799 * 120.00194 * 2 1
4 4 H 1.48499 * 109.47329 * 270.00228 * 3 2 1
5 5 H 1.48494 * 109.47116 * 30.00156 * 3 2 1
6 6 H 1.48500 * 109.47164 * 150.00062 * 3 2 1
7 7 C 1.37879 * 119.99988 * 180.02562 * 2 1 3
8 8 H 1.08007 * 119.99952 * 359.97438 * 7 2 1
9 9 C 1.50700 * 120.00381 * 179.97438 * 7 2 1
10 10 C 1.52997 * 109.47365 * 179.97438 * 9 7 2
11 11 C 1.52999 * 109.46974 * 179.97438 * 10 9 7
12 12 C 1.53004 * 109.47239 * 179.97438 * 11 10 9
13 13 C 1.50695 * 109.47251 * 179.97438 * 12 11 10
14 14 O 1.21276 * 120.00130 * 0.02562 * 13 12 11
15 15 N 1.34777 * 119.99943 * 179.97438 * 13 12 11
16 16 C 1.46503 * 120.00232 * 180.02562 * 15 13 12
17 17 H 1.09001 * 109.13634 * 35.72361 * 16 15 13
18 18 C 1.51593 * 109.18647 * 155.00501 * 16 15 13
19 19 C 1.51590 * 114.42848 * 188.49972 * 18 16 15
20 20 C 1.53069 * 110.94657 * 291.86134 * 19 18 16
21 21 C 1.51464 * 108.62525 * 85.48872 * 20 19 18
22 22 C 1.38385 * 119.52649 * 109.43527 * 21 20 19
23 23 C 1.38299 * 119.61875 * 179.97438 * 22 21 20
24 24 C 1.38251 * 120.05462 * 0.02562 * 23 22 21
25 25 C 1.38064 * 120.04002 * 0.50899 * 24 23 22
26 26 C 1.36955 * 120.20382 * 289.71706 * 21 20 19
27 27 C 1.51462 * 120.13800 * 359.49693 * 26 21 20
28 28 H 0.97001 * 120.00068 * 359.97438 * 1 2 3
29 29 H 1.09001 * 109.46944 * 59.99565 * 9 7 2
30 30 H 1.08998 * 109.46976 * 300.00038 * 9 7 2
31 31 H 1.09003 * 109.46930 * 60.00491 * 10 9 7
32 32 H 1.08998 * 109.47350 * 300.00110 * 10 9 7
33 33 H 1.09003 * 109.47516 * 60.00277 * 11 10 9
34 34 H 1.08998 * 109.47758 * 300.00109 * 11 10 9
35 35 H 1.09003 * 109.46594 * 59.99769 * 12 11 10
36 36 H 1.08998 * 109.47264 * 300.00321 * 12 11 10
37 37 H 0.97002 * 120.00243 * 0.02562 * 15 13 12
38 38 H 1.08990 * 108.49150 * 67.21811 * 18 16 15
39 39 H 1.09003 * 108.48907 * 309.77868 * 18 16 15
40 40 H 1.09003 * 109.17853 * 171.48585 * 19 18 16
41 41 H 1.08995 * 109.14568 * 52.21670 * 19 18 16
42 42 H 1.09002 * 109.64168 * 205.28403 * 20 19 18
43 43 H 1.09002 * 109.63984 * 325.69945 * 20 19 18
44 44 H 1.07999 * 120.19167 * 359.97438 * 22 21 20
45 45 H 1.08003 * 119.96956 * 179.97438 * 23 22 21
46 46 H 1.08004 * 119.96878 * 180.02562 * 24 23 22
47 47 H 1.07997 * 120.14039 * 179.97438 * 25 24 23
48 48 H 1.08999 * 109.64025 * 311.28203 * 27 26 21
49 49 H 1.09001 * 109.80875 * 190.76335 * 27 26 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0464 -1.4000
5 1 1.4466 2.6526 0.7000
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 1.4644 -2.1294 -0.0005
9 6 3.5115 -1.1942 -0.0011
10 6 4.0214 -2.6367 -0.0010
11 6 5.5514 -2.6367 -0.0022
12 6 6.0614 -4.0792 -0.0015
13 6 7.5684 -4.0792 -0.0033
14 8 8.1748 -3.0289 -0.0046
15 7 8.2423 -5.2464 -0.0025
16 6 9.7073 -5.2465 -0.0037
17 1 10.0652 -4.4097 0.5962
18 6 10.2059 -6.5434 0.6024
19 6 11.7014 -6.5870 0.8467
20 6 12.4716 -6.6070 -0.4760
21 6 12.6588 -5.1802 -0.9484
22 6 13.9195 -4.6104 -0.9144
23 6 14.0927 -3.3079 -1.3457
24 6 13.0106 -2.5816 -1.8072
25 6 11.7535 -3.1522 -1.8282
26 6 11.5867 -4.4578 -1.4003
27 6 10.2091 -5.0860 -1.4409
28 1 -0.4850 0.8400 0.0004
29 1 3.8751 -0.6805 0.8888
30 1 3.8745 -0.6802 -0.8911
31 1 3.6578 -3.1506 -0.8908
32 1 3.6584 -3.1503 0.8892
33 1 5.9155 -2.1225 0.8873
34 1 5.9141 -2.1232 -0.8926
35 1 5.6973 -4.5937 -0.8908
36 1 5.6988 -4.5923 0.8892
37 1 7.7573 -6.0865 -0.0011
38 1 9.9409 -7.3620 -0.0667
39 1 9.6956 -6.6995 1.5528
40 1 11.9451 -7.4836 1.4167
41 1 11.9958 -5.7076 1.4193
42 1 13.4450 -7.0741 -0.3261
43 1 11.9067 -7.1682 -1.2204
44 1 14.7632 -5.1796 -0.5531
45 1 15.0740 -2.8574 -1.3213
46 1 13.1475 -1.5647 -2.1442
47 1 10.9070 -2.5863 -2.1880
48 1 10.2660 -6.0632 -1.9204
49 1 9.5266 -4.4439 -1.9978
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000888248743.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:10:57
Heat of formation + Delta-G solvation = -52.738378 kcal
Electronic energy + Delta-G solvation = -25494.854722 eV
Core-core repulsion = 21998.792667 eV
Total energy + Delta-G solvation = -3496.062055 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-40.70070 -39.49686 -37.05783 -35.04031 -34.41443 -32.73692 -32.44224 -31.39117
-30.25009 -29.10247 -26.12151 -25.97947 -24.05517 -22.60459 -21.97740 -20.98030
-20.37693 -20.00875 -20.00108 -17.10335 -16.89451 -16.59670 -16.29302 -15.80861
-15.66727 -15.28154 -14.73152 -14.28793 -14.12573 -13.99151 -13.81925 -13.66197
-13.52600 -13.23913 -12.75153 -12.63125 -12.50831 -12.33174 -12.08791 -12.05833
-11.73172 -11.54385 -11.26928 -11.09613 -11.09072 -10.96567 -10.87957 -10.71857
-10.51894 -9.93747 -9.78796 -9.63338 -9.41802 -9.35251 -9.10275 -8.98279
-8.74979 -8.48128 -5.99314 -3.96641 1.14023 1.17136 2.70018 3.04168
3.36386 3.43339 3.49620 3.54398 4.22231 4.41370 4.49117 4.51321
4.54932 4.64239 4.75554 4.81109 4.89969 5.00594 5.07537 5.11388
5.21099 5.25388 5.31131 5.31867 5.35725 5.36815 5.48702 5.50084
5.58811 5.71967 5.74199 5.81292 5.85106 5.91990 5.94413 6.05240
6.17733 6.26655 6.30676 6.35250 6.44460 6.47663 6.70374 6.80266
6.84495 7.01005 7.39845 7.42286 7.52714 7.86232 8.24928 8.59698
9.05694 9.64145 11.14174
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.020998 B = 0.002231 C = 0.002058
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1333.143008 B =12545.646924 C =13603.951131
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.906 5.906
2 C 0.064 3.936
3 Si 0.880 3.120
4 H -0.277 1.277
5 H -0.289 1.289
6 H -0.264 1.264
7 C -0.519 4.519
8 H 0.071 0.929
9 C -0.016 4.016
10 C -0.102 4.102
11 C -0.106 4.106
12 C -0.139 4.139
13 C 0.512 3.488
14 O -0.533 6.533
15 N -0.736 5.736
16 C 0.152 3.848
17 H 0.087 0.913
18 C -0.127 4.127
19 C -0.109 4.109
20 C -0.081 4.081
21 C -0.082 4.082
22 C -0.120 4.120
23 C -0.123 4.123
24 C -0.124 4.124
25 C -0.104 4.104
26 C -0.075 4.075
27 C -0.088 4.088
28 H 0.262 0.738
29 H 0.015 0.985
30 H 0.011 0.989
31 H 0.052 0.948
32 H 0.053 0.947
33 H 0.063 0.937
34 H 0.063 0.937
35 H 0.091 0.909
36 H 0.091 0.909
37 H 0.399 0.601
38 H 0.066 0.934
39 H 0.069 0.931
40 H 0.071 0.929
41 H 0.067 0.933
42 H 0.072 0.928
43 H 0.075 0.925
44 H 0.120 0.880
45 H 0.119 0.881
46 H 0.120 0.880
47 H 0.124 0.876
48 H 0.075 0.925
49 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 29.859 -17.222 -1.411 34.499
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.545 5.545
2 C -0.137 4.137
3 Si 0.707 3.293
4 H -0.203 1.203
5 H -0.215 1.215
6 H -0.189 1.189
7 C -0.557 4.557
8 H 0.089 0.911
9 C -0.053 4.053
10 C -0.140 4.140
11 C -0.144 4.144
12 C -0.179 4.179
13 C 0.300 3.700
14 O -0.409 6.409
15 N -0.389 5.389
16 C 0.047 3.953
17 H 0.105 0.895
18 C -0.165 4.165
19 C -0.147 4.147
20 C -0.118 4.118
21 C -0.082 4.082
22 C -0.138 4.138
23 C -0.141 4.141
24 C -0.142 4.142
25 C -0.122 4.122
26 C -0.075 4.075
27 C -0.126 4.126
28 H 0.072 0.928
29 H 0.034 0.966
30 H 0.029 0.971
31 H 0.071 0.929
32 H 0.071 0.929
33 H 0.082 0.918
34 H 0.082 0.918
35 H 0.110 0.890
36 H 0.110 0.890
37 H 0.233 0.767
38 H 0.085 0.915
39 H 0.088 0.912
40 H 0.090 0.910
41 H 0.085 0.915
42 H 0.091 0.909
43 H 0.094 0.906
44 H 0.138 0.862
45 H 0.137 0.863
46 H 0.138 0.862
47 H 0.142 0.858
48 H 0.093 0.907
49 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 30.123 -16.329 -1.392 34.293
hybrid contribution 0.120 0.584 -0.065 0.600
sum 30.243 -15.745 -1.457 34.127
Atomic orbital electron populations
1.69920 1.06298 1.26804 1.51517 1.25046 0.94744 0.99233 0.94642
0.86771 0.80438 0.83545 0.78529 1.20327 1.21471 1.18896 1.21187
0.89677 0.94364 1.50450 0.91120 1.19576 0.96893 0.92531 0.96298
1.21475 0.91753 0.99885 1.00898 1.21474 0.97149 0.92892 1.02850
1.21781 0.90309 1.01687 1.04148 1.21080 0.90825 0.83253 0.74888
1.90705 1.70554 1.31270 1.48355 1.46234 1.06574 1.09049 1.76996
1.20560 0.79928 0.98979 0.95837 0.89514 1.21306 0.96691 0.96889
1.01599 1.21189 0.93729 1.02716 0.97042 1.20823 1.01000 0.92819
0.97158 1.19604 0.92942 0.96244 0.99420 1.21083 0.96452 0.95464
1.00820 1.21140 0.98796 0.94697 0.99507 1.21125 0.92863 0.99976
1.00195 1.21179 0.97405 0.94567 0.99079 1.19478 0.94678 0.94233
0.99151 1.21211 0.93192 1.01043 0.97201 0.92836 0.96639 0.97074
0.92897 0.92861 0.91844 0.91846 0.89043 0.89044 0.76726 0.91540
0.91244 0.90991 0.91459 0.90934 0.90621 0.86174 0.86306 0.86163
0.85801 0.90686 0.90386
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -28.52 13.96 55.43 0.77 -27.74 16
2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16
3 Si 0.88 22.51 27.47 -169.99 -4.67 17.84 16
4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16
5 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16
6 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16
7 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16
8 H 0.07 2.19 7.99 -52.48 -0.42 1.78 16
9 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16
10 C -0.10 -2.03 5.15 -26.73 -0.14 -2.17 16
11 C -0.11 -1.78 4.50 -26.73 -0.12 -1.90 16
12 C -0.14 -1.74 5.70 -27.88 -0.16 -1.90 16
13 C 0.51 6.68 7.61 -10.99 -0.08 6.60 16
14 O -0.53 -9.19 15.65 5.56 0.09 -9.10 16
15 N -0.74 -6.81 5.04 -54.46 -0.27 -7.09 16
16 C 0.15 1.39 2.23 -68.60 -0.15 1.23 16
17 H 0.09 1.06 7.29 -51.93 -0.38 0.68 16
18 C -0.13 -0.80 4.65 -28.16 -0.13 -0.93 16
19 C -0.11 -0.65 5.65 -27.41 -0.15 -0.80 16
20 C -0.08 -0.50 5.44 -27.47 -0.15 -0.65 16
21 C -0.08 -0.71 5.00 -104.66 -0.52 -1.23 16
22 C -0.12 -0.99 9.69 -39.50 -0.38 -1.38 16
23 C -0.12 -1.06 10.05 -39.55 -0.40 -1.46 16
24 C -0.12 -1.19 10.04 -39.64 -0.40 -1.59 16
25 C -0.10 -1.13 9.68 -39.59 -0.38 -1.52 16
26 C -0.07 -0.75 4.98 -104.65 -0.52 -1.27 16
27 C -0.09 -0.82 5.07 -27.47 -0.14 -0.96 16
28 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16
29 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16
30 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16
31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16
32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16
33 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16
34 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16
35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16
36 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16
37 H 0.40 2.51 8.59 -40.82 -0.35 2.16 16
38 H 0.07 0.33 7.83 -51.93 -0.41 -0.07 16
39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
41 H 0.07 0.49 7.86 -51.93 -0.41 0.08 16
42 H 0.07 0.36 7.91 -51.93 -0.41 -0.05 16
43 H 0.08 0.43 6.92 -51.93 -0.36 0.07 16
44 H 0.12 0.74 7.97 -52.49 -0.42 0.32 16
45 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16
46 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16
47 H 0.12 1.38 7.98 -52.49 -0.42 0.97 16
48 H 0.07 0.58 6.91 -51.93 -0.36 0.22 16
49 H 0.08 0.87 7.68 -51.93 -0.40 0.47 16
LS Contribution 386.64 15.07 5.83 5.83
Total: -1.00 -34.49 386.64 -11.12 -45.60
By element:
Atomic # 1 Polarization: 7.25 SS G_CDS: -8.48 Total: -1.24 kcal
Atomic # 6 Polarization: -19.73 SS G_CDS: -4.38 Total: -24.10 kcal
Atomic # 7 Polarization: -35.33 SS G_CDS: 0.50 Total: -34.83 kcal
Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal
Atomic # 14 Polarization: 22.51 SS G_CDS: -4.67 Total: 17.84 kcal
Total LS contribution 5.83 Total: 5.83 kcal
Total: -34.49 -11.12 -45.60 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000888248743.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.134 kcal
(2) G-P(sol) polarization free energy of solvation -34.487 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.621 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.118 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.605 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.738 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds