Wall clock time and date at job start Tue Mar 31 2020 11:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00194 * 2 1 4 4 H 1.48499 * 109.47329 * 270.00228 * 3 2 1 5 5 H 1.48494 * 109.47116 * 30.00156 * 3 2 1 6 6 H 1.48500 * 109.47164 * 150.00062 * 3 2 1 7 7 C 1.37879 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99952 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00381 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47365 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46974 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47239 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47251 * 179.97438 * 12 11 10 14 14 O 1.21276 * 120.00130 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99943 * 179.97438 * 13 12 11 16 16 C 1.46503 * 120.00232 * 180.02562 * 15 13 12 17 17 H 1.09001 * 109.13634 * 35.72361 * 16 15 13 18 18 C 1.51593 * 109.18647 * 155.00501 * 16 15 13 19 19 C 1.51590 * 114.42848 * 188.49972 * 18 16 15 20 20 C 1.53069 * 110.94657 * 291.86134 * 19 18 16 21 21 C 1.51464 * 108.62525 * 85.48872 * 20 19 18 22 22 C 1.38385 * 119.52649 * 109.43527 * 21 20 19 23 23 C 1.38299 * 119.61875 * 179.97438 * 22 21 20 24 24 C 1.38251 * 120.05462 * 0.02562 * 23 22 21 25 25 C 1.38064 * 120.04002 * 0.50899 * 24 23 22 26 26 C 1.36955 * 120.20382 * 289.71706 * 21 20 19 27 27 C 1.51462 * 120.13800 * 359.49693 * 26 21 20 28 28 H 0.97001 * 120.00068 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46944 * 59.99565 * 9 7 2 30 30 H 1.08998 * 109.46976 * 300.00038 * 9 7 2 31 31 H 1.09003 * 109.46930 * 60.00491 * 10 9 7 32 32 H 1.08998 * 109.47350 * 300.00110 * 10 9 7 33 33 H 1.09003 * 109.47516 * 60.00277 * 11 10 9 34 34 H 1.08998 * 109.47758 * 300.00109 * 11 10 9 35 35 H 1.09003 * 109.46594 * 59.99769 * 12 11 10 36 36 H 1.08998 * 109.47264 * 300.00321 * 12 11 10 37 37 H 0.97002 * 120.00243 * 0.02562 * 15 13 12 38 38 H 1.08990 * 108.49150 * 67.21811 * 18 16 15 39 39 H 1.09003 * 108.48907 * 309.77868 * 18 16 15 40 40 H 1.09003 * 109.17853 * 171.48585 * 19 18 16 41 41 H 1.08995 * 109.14568 * 52.21670 * 19 18 16 42 42 H 1.09002 * 109.64168 * 205.28403 * 20 19 18 43 43 H 1.09002 * 109.63984 * 325.69945 * 20 19 18 44 44 H 1.07999 * 120.19167 * 359.97438 * 22 21 20 45 45 H 1.08003 * 119.96956 * 179.97438 * 23 22 21 46 46 H 1.08004 * 119.96878 * 180.02562 * 24 23 22 47 47 H 1.07997 * 120.14039 * 179.97438 * 25 24 23 48 48 H 1.08999 * 109.64025 * 311.28203 * 27 26 21 49 49 H 1.09001 * 109.80875 * 190.76335 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5514 -2.6367 -0.0022 12 6 6.0614 -4.0792 -0.0015 13 6 7.5684 -4.0792 -0.0033 14 8 8.1748 -3.0289 -0.0046 15 7 8.2423 -5.2464 -0.0025 16 6 9.7073 -5.2465 -0.0037 17 1 10.0652 -4.4097 0.5962 18 6 10.2059 -6.5434 0.6024 19 6 11.7014 -6.5870 0.8467 20 6 12.4716 -6.6070 -0.4760 21 6 12.6588 -5.1802 -0.9484 22 6 13.9195 -4.6104 -0.9144 23 6 14.0927 -3.3079 -1.3457 24 6 13.0106 -2.5816 -1.8072 25 6 11.7535 -3.1522 -1.8282 26 6 11.5867 -4.4578 -1.4003 27 6 10.2091 -5.0860 -1.4409 28 1 -0.4850 0.8400 0.0004 29 1 3.8751 -0.6805 0.8888 30 1 3.8745 -0.6802 -0.8911 31 1 3.6578 -3.1506 -0.8908 32 1 3.6584 -3.1503 0.8892 33 1 5.9155 -2.1225 0.8873 34 1 5.9141 -2.1232 -0.8926 35 1 5.6973 -4.5937 -0.8908 36 1 5.6988 -4.5923 0.8892 37 1 7.7573 -6.0865 -0.0011 38 1 9.9409 -7.3620 -0.0667 39 1 9.6956 -6.6995 1.5528 40 1 11.9451 -7.4836 1.4167 41 1 11.9958 -5.7076 1.4193 42 1 13.4450 -7.0741 -0.3261 43 1 11.9067 -7.1682 -1.2204 44 1 14.7632 -5.1796 -0.5531 45 1 15.0740 -2.8574 -1.3213 46 1 13.1475 -1.5647 -2.1442 47 1 10.9070 -2.5863 -2.1880 48 1 10.2660 -6.0632 -1.9204 49 1 9.5266 -4.4439 -1.9978 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888248743.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:57 Heat of formation + Delta-G solvation = -52.738378 kcal Electronic energy + Delta-G solvation = -25494.854722 eV Core-core repulsion = 21998.792667 eV Total energy + Delta-G solvation = -3496.062055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.70070 -39.49686 -37.05783 -35.04031 -34.41443 -32.73692 -32.44224 -31.39117 -30.25009 -29.10247 -26.12151 -25.97947 -24.05517 -22.60459 -21.97740 -20.98030 -20.37693 -20.00875 -20.00108 -17.10335 -16.89451 -16.59670 -16.29302 -15.80861 -15.66727 -15.28154 -14.73152 -14.28793 -14.12573 -13.99151 -13.81925 -13.66197 -13.52600 -13.23913 -12.75153 -12.63125 -12.50831 -12.33174 -12.08791 -12.05833 -11.73172 -11.54385 -11.26928 -11.09613 -11.09072 -10.96567 -10.87957 -10.71857 -10.51894 -9.93747 -9.78796 -9.63338 -9.41802 -9.35251 -9.10275 -8.98279 -8.74979 -8.48128 -5.99314 -3.96641 1.14023 1.17136 2.70018 3.04168 3.36386 3.43339 3.49620 3.54398 4.22231 4.41370 4.49117 4.51321 4.54932 4.64239 4.75554 4.81109 4.89969 5.00594 5.07537 5.11388 5.21099 5.25388 5.31131 5.31867 5.35725 5.36815 5.48702 5.50084 5.58811 5.71967 5.74199 5.81292 5.85106 5.91990 5.94413 6.05240 6.17733 6.26655 6.30676 6.35250 6.44460 6.47663 6.70374 6.80266 6.84495 7.01005 7.39845 7.42286 7.52714 7.86232 8.24928 8.59698 9.05694 9.64145 11.14174 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.020998 B = 0.002231 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.143008 B =12545.646924 C =13603.951131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.102 4.102 11 C -0.106 4.106 12 C -0.139 4.139 13 C 0.512 3.488 14 O -0.533 6.533 15 N -0.736 5.736 16 C 0.152 3.848 17 H 0.087 0.913 18 C -0.127 4.127 19 C -0.109 4.109 20 C -0.081 4.081 21 C -0.082 4.082 22 C -0.120 4.120 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.104 4.104 26 C -0.075 4.075 27 C -0.088 4.088 28 H 0.262 0.738 29 H 0.015 0.985 30 H 0.011 0.989 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.399 0.601 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.124 0.876 48 H 0.075 0.925 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.859 -17.222 -1.411 34.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.144 4.144 12 C -0.179 4.179 13 C 0.300 3.700 14 O -0.409 6.409 15 N -0.389 5.389 16 C 0.047 3.953 17 H 0.105 0.895 18 C -0.165 4.165 19 C -0.147 4.147 20 C -0.118 4.118 21 C -0.082 4.082 22 C -0.138 4.138 23 C -0.141 4.141 24 C -0.142 4.142 25 C -0.122 4.122 26 C -0.075 4.075 27 C -0.126 4.126 28 H 0.072 0.928 29 H 0.034 0.966 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.233 0.767 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.142 0.858 48 H 0.093 0.907 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 30.123 -16.329 -1.392 34.293 hybrid contribution 0.120 0.584 -0.065 0.600 sum 30.243 -15.745 -1.457 34.127 Atomic orbital electron populations 1.69920 1.06298 1.26804 1.51517 1.25046 0.94744 0.99233 0.94642 0.86771 0.80438 0.83545 0.78529 1.20327 1.21471 1.18896 1.21187 0.89677 0.94364 1.50450 0.91120 1.19576 0.96893 0.92531 0.96298 1.21475 0.91753 0.99885 1.00898 1.21474 0.97149 0.92892 1.02850 1.21781 0.90309 1.01687 1.04148 1.21080 0.90825 0.83253 0.74888 1.90705 1.70554 1.31270 1.48355 1.46234 1.06574 1.09049 1.76996 1.20560 0.79928 0.98979 0.95837 0.89514 1.21306 0.96691 0.96889 1.01599 1.21189 0.93729 1.02716 0.97042 1.20823 1.01000 0.92819 0.97158 1.19604 0.92942 0.96244 0.99420 1.21083 0.96452 0.95464 1.00820 1.21140 0.98796 0.94697 0.99507 1.21125 0.92863 0.99976 1.00195 1.21179 0.97405 0.94567 0.99079 1.19478 0.94678 0.94233 0.99151 1.21211 0.93192 1.01043 0.97201 0.92836 0.96639 0.97074 0.92897 0.92861 0.91844 0.91846 0.89043 0.89044 0.76726 0.91540 0.91244 0.90991 0.91459 0.90934 0.90621 0.86174 0.86306 0.86163 0.85801 0.90686 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.52 13.96 55.43 0.77 -27.74 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.51 27.47 -169.99 -4.67 17.84 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 6 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 7 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16 8 H 0.07 2.19 7.99 -52.48 -0.42 1.78 16 9 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 10 C -0.10 -2.03 5.15 -26.73 -0.14 -2.17 16 11 C -0.11 -1.78 4.50 -26.73 -0.12 -1.90 16 12 C -0.14 -1.74 5.70 -27.88 -0.16 -1.90 16 13 C 0.51 6.68 7.61 -10.99 -0.08 6.60 16 14 O -0.53 -9.19 15.65 5.56 0.09 -9.10 16 15 N -0.74 -6.81 5.04 -54.46 -0.27 -7.09 16 16 C 0.15 1.39 2.23 -68.60 -0.15 1.23 16 17 H 0.09 1.06 7.29 -51.93 -0.38 0.68 16 18 C -0.13 -0.80 4.65 -28.16 -0.13 -0.93 16 19 C -0.11 -0.65 5.65 -27.41 -0.15 -0.80 16 20 C -0.08 -0.50 5.44 -27.47 -0.15 -0.65 16 21 C -0.08 -0.71 5.00 -104.66 -0.52 -1.23 16 22 C -0.12 -0.99 9.69 -39.50 -0.38 -1.38 16 23 C -0.12 -1.06 10.05 -39.55 -0.40 -1.46 16 24 C -0.12 -1.19 10.04 -39.64 -0.40 -1.59 16 25 C -0.10 -1.13 9.68 -39.59 -0.38 -1.52 16 26 C -0.07 -0.75 4.98 -104.65 -0.52 -1.27 16 27 C -0.09 -0.82 5.07 -27.47 -0.14 -0.96 16 28 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 29 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 30 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 34 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.40 2.51 8.59 -40.82 -0.35 2.16 16 38 H 0.07 0.33 7.83 -51.93 -0.41 -0.07 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.49 7.86 -51.93 -0.41 0.08 16 42 H 0.07 0.36 7.91 -51.93 -0.41 -0.05 16 43 H 0.08 0.43 6.92 -51.93 -0.36 0.07 16 44 H 0.12 0.74 7.97 -52.49 -0.42 0.32 16 45 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 46 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 47 H 0.12 1.38 7.98 -52.49 -0.42 0.97 16 48 H 0.07 0.58 6.91 -51.93 -0.36 0.22 16 49 H 0.08 0.87 7.68 -51.93 -0.40 0.47 16 LS Contribution 386.64 15.07 5.83 5.83 Total: -1.00 -34.49 386.64 -11.12 -45.60 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -8.48 Total: -1.24 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -4.38 Total: -24.10 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.50 Total: -34.83 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.67 Total: 17.84 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.49 -11.12 -45.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888248743.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.134 kcal (2) G-P(sol) polarization free energy of solvation -34.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds