Wall clock time and date at job start Tue Mar 31 2020 11:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00194 * 2 1 4 4 H 1.48499 * 109.47329 * 270.00228 * 3 2 1 5 5 H 1.48494 * 109.47116 * 30.00156 * 3 2 1 6 6 H 1.48500 * 109.47164 * 150.00062 * 3 2 1 7 7 C 1.37879 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99952 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00381 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47365 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46974 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47239 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47251 * 179.97438 * 12 11 10 14 14 O 1.21276 * 120.00130 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99943 * 179.97438 * 13 12 11 16 16 C 1.46503 * 120.00232 * 180.02562 * 15 13 12 17 17 H 1.09001 * 109.13634 * 35.72361 * 16 15 13 18 18 C 1.51593 * 109.18647 * 155.00501 * 16 15 13 19 19 C 1.51590 * 114.42848 * 188.49972 * 18 16 15 20 20 C 1.53069 * 110.94657 * 291.86134 * 19 18 16 21 21 C 1.51464 * 108.62525 * 85.48872 * 20 19 18 22 22 C 1.38385 * 119.52649 * 109.43527 * 21 20 19 23 23 C 1.38299 * 119.61875 * 179.97438 * 22 21 20 24 24 C 1.38251 * 120.05462 * 0.02562 * 23 22 21 25 25 C 1.38064 * 120.04002 * 0.50899 * 24 23 22 26 26 C 1.36955 * 120.20382 * 289.71706 * 21 20 19 27 27 C 1.51462 * 120.13800 * 359.49693 * 26 21 20 28 28 H 0.97001 * 120.00068 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46944 * 59.99565 * 9 7 2 30 30 H 1.08998 * 109.46976 * 300.00038 * 9 7 2 31 31 H 1.09003 * 109.46930 * 60.00491 * 10 9 7 32 32 H 1.08998 * 109.47350 * 300.00110 * 10 9 7 33 33 H 1.09003 * 109.47516 * 60.00277 * 11 10 9 34 34 H 1.08998 * 109.47758 * 300.00109 * 11 10 9 35 35 H 1.09003 * 109.46594 * 59.99769 * 12 11 10 36 36 H 1.08998 * 109.47264 * 300.00321 * 12 11 10 37 37 H 0.97002 * 120.00243 * 0.02562 * 15 13 12 38 38 H 1.08990 * 108.49150 * 67.21811 * 18 16 15 39 39 H 1.09003 * 108.48907 * 309.77868 * 18 16 15 40 40 H 1.09003 * 109.17853 * 171.48585 * 19 18 16 41 41 H 1.08995 * 109.14568 * 52.21670 * 19 18 16 42 42 H 1.09002 * 109.64168 * 205.28403 * 20 19 18 43 43 H 1.09002 * 109.63984 * 325.69945 * 20 19 18 44 44 H 1.07999 * 120.19167 * 359.97438 * 22 21 20 45 45 H 1.08003 * 119.96956 * 179.97438 * 23 22 21 46 46 H 1.08004 * 119.96878 * 180.02562 * 24 23 22 47 47 H 1.07997 * 120.14039 * 179.97438 * 25 24 23 48 48 H 1.08999 * 109.64025 * 311.28203 * 27 26 21 49 49 H 1.09001 * 109.80875 * 190.76335 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5514 -2.6367 -0.0022 12 6 6.0614 -4.0792 -0.0015 13 6 7.5684 -4.0792 -0.0033 14 8 8.1748 -3.0289 -0.0046 15 7 8.2423 -5.2464 -0.0025 16 6 9.7073 -5.2465 -0.0037 17 1 10.0652 -4.4097 0.5962 18 6 10.2059 -6.5434 0.6024 19 6 11.7014 -6.5870 0.8467 20 6 12.4716 -6.6070 -0.4760 21 6 12.6588 -5.1802 -0.9484 22 6 13.9195 -4.6104 -0.9144 23 6 14.0927 -3.3079 -1.3457 24 6 13.0106 -2.5816 -1.8072 25 6 11.7535 -3.1522 -1.8282 26 6 11.5867 -4.4578 -1.4003 27 6 10.2091 -5.0860 -1.4409 28 1 -0.4850 0.8400 0.0004 29 1 3.8751 -0.6805 0.8888 30 1 3.8745 -0.6802 -0.8911 31 1 3.6578 -3.1506 -0.8908 32 1 3.6584 -3.1503 0.8892 33 1 5.9155 -2.1225 0.8873 34 1 5.9141 -2.1232 -0.8926 35 1 5.6973 -4.5937 -0.8908 36 1 5.6988 -4.5923 0.8892 37 1 7.7573 -6.0865 -0.0011 38 1 9.9409 -7.3620 -0.0667 39 1 9.6956 -6.6995 1.5528 40 1 11.9451 -7.4836 1.4167 41 1 11.9958 -5.7076 1.4193 42 1 13.4450 -7.0741 -0.3261 43 1 11.9067 -7.1682 -1.2204 44 1 14.7632 -5.1796 -0.5531 45 1 15.0740 -2.8574 -1.3213 46 1 13.1475 -1.5647 -2.1442 47 1 10.9070 -2.5863 -2.1880 48 1 10.2660 -6.0632 -1.9204 49 1 9.5266 -4.4439 -1.9978 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888248743.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:55 Heat of formation + Delta-G solvation = -72.457064 kcal Electronic energy + Delta-G solvation = -25495.709789 eV Core-core repulsion = 21998.792667 eV Total energy + Delta-G solvation = -3496.917121 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.45259 -40.40938 -37.81762 -36.63524 -35.18666 -34.60682 -33.36334 -32.20824 -31.65960 -29.99647 -27.59012 -26.72832 -24.95293 -23.63141 -23.14929 -21.75994 -21.67024 -21.16135 -20.82324 -18.86136 -17.85067 -17.78208 -17.07761 -16.85896 -16.50567 -16.28995 -15.99585 -15.62910 -15.14652 -15.08376 -14.72546 -14.53778 -14.28520 -14.23799 -14.00890 -13.78530 -13.68454 -13.49981 -13.40572 -12.98071 -12.92416 -12.77795 -12.34385 -12.13433 -12.07614 -11.85209 -11.76544 -11.69030 -11.57670 -11.50041 -11.45985 -11.35303 -11.26923 -10.76986 -10.73831 -10.24191 -9.68971 -9.44602 -8.30523 -6.33366 0.44565 0.46923 1.33578 1.35043 1.47989 1.68736 2.19569 2.34902 2.84693 3.04728 3.64020 3.76646 3.86447 3.93643 3.99861 4.04142 4.04726 4.11829 4.15576 4.23561 4.37081 4.44711 4.47145 4.59844 4.65427 4.66024 4.72820 4.77404 4.82408 4.83251 4.86066 4.94105 5.09351 5.10132 5.14170 5.19991 5.21172 5.23233 5.27389 5.29458 5.40505 5.54075 5.60147 5.60432 5.63018 5.64959 5.68031 5.78216 6.13646 6.28778 6.60952 6.74392 7.31297 7.32946 8.85981 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.020998 B = 0.002231 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.143008 B =12545.646924 C =13603.951131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.003 3.997 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.254 1.254 7 C -0.530 4.530 8 H 0.038 0.962 9 C -0.017 4.017 10 C -0.093 4.093 11 C -0.097 4.097 12 C -0.131 4.131 13 C 0.511 3.489 14 O -0.584 6.584 15 N -0.716 5.716 16 C 0.155 3.845 17 H 0.050 0.950 18 C -0.122 4.122 19 C -0.106 4.106 20 C -0.079 4.079 21 C -0.086 4.086 22 C -0.124 4.124 23 C -0.129 4.129 24 C -0.138 4.138 25 C -0.133 4.133 26 C -0.091 4.091 27 C -0.082 4.082 28 H 0.266 0.734 29 H 0.012 0.988 30 H 0.011 0.989 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.418 0.582 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.048 0.952 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.147 0.853 45 H 0.141 0.859 46 H 0.127 0.873 47 H 0.105 0.895 48 H 0.097 0.903 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.237 -19.431 -1.043 37.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.193 4.193 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.178 1.178 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.055 4.055 10 C -0.131 4.131 11 C -0.135 4.135 12 C -0.171 4.171 13 C 0.299 3.701 14 O -0.464 6.464 15 N -0.369 5.369 16 C 0.050 3.950 17 H 0.069 0.931 18 C -0.160 4.160 19 C -0.144 4.144 20 C -0.116 4.116 21 C -0.086 4.086 22 C -0.141 4.141 23 C -0.147 4.147 24 C -0.156 4.156 25 C -0.152 4.152 26 C -0.091 4.091 27 C -0.120 4.120 28 H 0.075 0.925 29 H 0.031 0.969 30 H 0.030 0.970 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.255 0.745 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.067 0.933 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.164 0.836 45 H 0.158 0.842 46 H 0.145 0.855 47 H 0.123 0.877 48 H 0.115 0.885 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 32.506 -18.601 -1.025 37.466 hybrid contribution -0.642 1.219 -0.183 1.390 sum 31.864 -17.382 -1.208 36.317 Atomic orbital electron populations 1.70054 1.08059 1.28067 1.52859 1.25987 0.95637 1.03360 0.94337 0.85702 0.79358 0.78711 0.79162 1.19245 1.20645 1.17751 1.21537 0.92056 0.93230 1.49933 0.94380 1.19579 0.93954 0.95952 0.95993 1.21336 0.93702 0.96669 1.01378 1.21271 0.94803 0.95896 1.01558 1.21683 0.89854 0.98953 1.06566 1.21175 0.91099 0.83463 0.74378 1.90698 1.71438 1.33244 1.50977 1.46041 1.06863 1.08834 1.75137 1.20554 0.79482 0.99534 0.95392 0.93139 1.21287 0.97102 0.95441 1.02164 1.21191 0.93229 1.02995 0.96983 1.20903 1.02306 0.91071 0.97273 1.19944 0.92544 0.97592 0.98524 1.21474 0.97199 0.95474 0.99979 1.21453 0.99303 0.95072 0.98882 1.21312 0.92909 1.00665 1.00745 1.21238 0.97556 0.95520 1.00844 1.19643 0.95610 0.94119 0.99738 1.21151 0.92410 1.01425 0.97053 0.92507 0.96918 0.97020 0.92392 0.92390 0.93256 0.93180 0.86577 0.86569 0.74483 0.89172 0.90603 0.88608 0.93279 0.89063 0.89649 0.83563 0.84157 0.85461 0.87683 0.88506 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 2 C 0.00 0.21 5.47 84.66 0.46 0.67 16 3 Si 0.95 46.55 27.47 68.60 1.88 48.44 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.25 -11.93 6.54 99.48 0.65 -11.28 16 7 C -0.53 -31.51 9.66 25.60 0.25 -31.26 16 8 H 0.04 2.44 7.99 -2.91 -0.02 2.41 16 9 C -0.02 -0.86 4.04 29.85 0.12 -0.74 16 10 C -0.09 -3.63 5.15 30.59 0.16 -3.47 16 11 C -0.10 -3.22 4.50 30.60 0.14 -3.08 16 12 C -0.13 -3.02 5.70 29.85 0.17 -2.85 16 13 C 0.51 13.00 7.61 87.66 0.67 13.66 16 14 O -0.58 -20.80 15.65 -3.02 -0.05 -20.84 16 15 N -0.72 -12.12 5.04 -444.62 -2.24 -14.36 16 16 C 0.16 2.70 2.23 44.55 0.10 2.80 16 17 H 0.05 1.28 7.29 -2.39 -0.02 1.26 16 18 C -0.12 -1.19 4.65 29.67 0.14 -1.05 16 19 C -0.11 -0.95 5.65 30.15 0.17 -0.78 16 20 C -0.08 -0.72 5.44 30.11 0.16 -0.56 16 21 C -0.09 -1.36 5.00 -19.89 -0.10 -1.46 16 22 C -0.12 -1.82 9.69 22.32 0.22 -1.61 16 23 C -0.13 -2.12 10.05 22.29 0.22 -1.89 16 24 C -0.14 -2.79 10.04 22.23 0.22 -2.57 16 25 C -0.13 -3.14 9.68 22.27 0.22 -2.93 16 26 C -0.09 -1.85 4.98 -19.89 -0.10 -1.95 16 27 C -0.08 -1.50 5.07 30.11 0.15 -1.35 16 28 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 29 H 0.01 0.62 7.20 -2.39 -0.02 0.61 16 30 H 0.01 0.56 7.57 -2.39 -0.02 0.55 16 31 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 34 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 35 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.42 3.95 8.59 -92.71 -0.80 3.15 16 38 H 0.09 0.50 7.83 -2.39 -0.02 0.48 16 39 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.05 0.64 7.86 -2.39 -0.02 0.62 16 42 H 0.09 0.53 7.91 -2.39 -0.02 0.51 16 43 H 0.09 0.65 6.92 -2.39 -0.02 0.63 16 44 H 0.15 1.33 7.97 -2.91 -0.02 1.31 16 45 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 46 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 47 H 0.10 2.72 7.98 -2.91 -0.02 2.70 16 48 H 0.10 1.29 6.91 -2.39 -0.02 1.28 16 49 H 0.05 1.21 7.68 -2.39 -0.02 1.20 16 Total: -1.00 -78.17 386.64 3.33 -74.84 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.07 Total: 12.86 kcal Atomic # 6 Polarization: -43.77 SS G_CDS: 3.37 Total: -40.40 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -1.94 Total: -74.90 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.05 Total: -20.84 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.88 Total: 48.44 kcal Total: -78.17 3.33 -74.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888248743.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.387 kcal (2) G-P(sol) polarization free energy of solvation -78.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds