Wall clock time and date at job start Tue Mar 31 2020 11:26:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86803 * 120.00123 * 2 1
4 4 H 1.48501 * 109.47151 * 269.99985 * 3 2 1
5 5 H 1.48498 * 109.47184 * 29.99939 * 3 2 1
6 6 H 1.48498 * 109.47171 * 149.99913 * 3 2 1
7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3
8 8 H 1.08005 * 120.00335 * 180.02562 * 7 2 1
9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1
10 10 C 1.53006 * 109.46942 * 179.97438 * 9 7 2
11 11 C 1.53002 * 109.46886 * 180.02562 * 10 9 7
12 12 N 1.46496 * 109.47045 * 180.02562 * 11 10 9
13 13 C 1.34784 * 120.00155 * 180.02562 * 12 11 10
14 14 O 1.21279 * 119.99673 * 359.97438 * 13 12 11
15 15 C 1.50696 * 120.00109 * 179.97438 * 13 12 11
16 16 C 1.52997 * 109.47055 * 179.97438 * 15 13 12
17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 13
18 18 C 1.50698 * 109.47184 * 179.97438 * 17 16 15
19 19 C 1.38227 * 120.00438 * 269.72991 * 18 17 16
20 20 C 1.38237 * 120.00073 * 179.78722 * 19 18 17
21 21 C 1.38226 * 119.99922 * 0.44109 * 20 19 18
22 22 C 1.50705 * 120.00134 * 179.83450 * 21 20 19
23 23 C 1.52999 * 117.49868 * 8.72220 * 22 21 20
24 24 C 1.53001 * 117.49690 * 300.06550 * 22 21 20
25 25 C 1.38239 * 120.00029 * 359.81232 * 21 20 19
26 26 C 1.38228 * 120.00077 * 359.97438 * 25 21 20
27 27 H 0.96997 * 119.99752 * 0.02562 * 1 2 3
28 28 H 1.08998 * 109.47224 * 60.00304 * 9 7 2
29 29 H 1.09001 * 109.47354 * 299.99371 * 9 7 2
30 30 H 1.09001 * 109.47377 * 60.00128 * 10 9 7
31 31 H 1.08996 * 109.47261 * 299.99586 * 10 9 7
32 32 H 1.09001 * 109.47600 * 59.99545 * 11 10 9
33 33 H 1.09004 * 109.47006 * 299.99766 * 11 10 9
34 34 H 0.97002 * 120.00100 * 359.97438 * 12 11 10
35 35 H 1.09001 * 109.47324 * 59.99162 * 15 13 12
36 36 H 1.09004 * 109.47043 * 299.99530 * 15 13 12
37 37 H 1.09001 * 109.46832 * 59.99966 * 16 15 13
38 38 H 1.08993 * 109.47194 * 299.99487 * 16 15 13
39 39 H 1.09001 * 109.46801 * 300.00272 * 17 16 15
40 40 H 1.09001 * 109.46998 * 59.99868 * 17 16 15
41 41 H 1.08003 * 119.99904 * 359.97438 * 19 18 17
42 42 H 1.07996 * 119.99821 * 180.27622 * 20 19 18
43 43 H 1.08996 * 115.55135 * 154.39785 * 22 21 20
44 44 H 1.09005 * 117.49548 * 0.02562 * 23 22 21
45 45 H 1.08998 * 117.50077 * 145.01921 * 23 22 21
46 46 H 1.09000 * 117.50038 * 214.97976 * 24 22 21
47 47 H 1.09002 * 117.50045 * 359.97438 * 24 22 21
48 48 H 1.07999 * 119.99576 * 179.97438 * 25 21 20
49 49 H 1.07994 * 120.00203 * 180.02562 * 26 25 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4467 2.6527 0.7000
6 1 3.5468 1.4402 0.7000
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0010
9 6 1.2510 -2.4991 0.0005
10 6 2.2454 -3.6621 0.0005
11 6 1.4803 -4.9871 -0.0001
12 7 2.4323 -6.1006 0.0005
13 6 1.9830 -7.3713 -0.0004
14 8 0.7906 -7.5929 -0.0013
15 6 2.9623 -8.5168 -0.0004
16 6 2.1973 -9.8417 -0.0009
17 6 3.1916 -11.0047 -0.0015
18 6 2.4381 -12.3098 -0.0014
19 6 2.0978 -12.9114 1.1957
20 6 1.4028 -14.1064 1.1958
21 6 1.0560 -14.7042 -0.0013
22 6 0.3016 -16.0088 -0.0013
23 6 -0.2294 -16.5178 1.3403
24 6 0.9651 -17.2086 0.6777
25 6 1.4008 -14.1052 -1.1985
26 6 2.0920 -12.9081 -1.1986
27 1 -0.4849 0.8400 -0.0004
28 1 0.6248 -2.5571 -0.8897
29 1 0.6241 -2.5567 0.8903
30 1 2.8720 -3.6044 0.8905
31 1 2.8720 -3.6044 -0.8894
32 1 0.8539 -5.0446 -0.8903
33 1 0.8534 -5.0451 0.8897
34 1 3.3860 -5.9234 0.0008
35 1 3.5885 -8.4594 0.8900
36 1 3.5895 -8.4586 -0.8900
37 1 1.5709 -9.8992 -0.8911
38 1 1.5705 -9.8997 0.8889
39 1 3.8182 -10.9465 -0.8915
40 1 3.8183 -10.9473 0.8885
41 1 2.3724 -12.4464 2.1310
42 1 1.1331 -14.5741 2.1311
43 1 -0.3022 -16.2027 -0.8878
44 1 -0.0333 -15.9089 2.2229
45 1 -1.1823 -17.0469 1.3364
46 1 0.7976 -18.1919 0.2382
47 1 1.9476 -17.0545 1.1241
48 1 1.1302 -14.5726 -2.1337
49 1 2.3610 -12.4399 -2.1338
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000888814310.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:26:40
Heat of formation + Delta-G solvation = -28.832589 kcal
Electronic energy + Delta-G solvation = -23812.196269 eV
Core-core repulsion = 20317.170847 eV
Total energy + Delta-G solvation = -3495.025422 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-40.12294 -39.48756 -37.47348 -35.53869 -34.67819 -33.30238 -31.60336 -31.19727
-30.84764 -27.79309 -26.35120 -23.98958 -23.30863 -22.76707 -22.51507 -21.59594
-20.69906 -20.34149 -19.76016 -17.26563 -16.75440 -16.39782 -16.20503 -15.79180
-15.47499 -15.17659 -15.00820 -14.57050 -14.45708 -14.27473 -13.71209 -13.69825
-13.44850 -13.34138 -12.70029 -12.31873 -12.23243 -12.17943 -11.98090 -11.82488
-11.71810 -11.61960 -11.32837 -11.16362 -10.94897 -10.90662 -10.83579 -10.73462
-10.72340 -10.59910 -9.86967 -9.84797 -9.35361 -9.17468 -9.11548 -8.75135
-8.64727 -8.37679 -6.02229 -4.05488 1.01739 1.15238 2.82676 3.20855
3.30374 3.36673 3.39079 3.45483 3.71206 4.14446 4.41600 4.43835
4.49541 4.52175 4.59143 4.71624 4.77650 4.78254 4.92776 5.01238
5.13868 5.18750 5.23450 5.33540 5.36467 5.37506 5.41439 5.47434
5.50834 5.62879 5.65407 5.75254 5.77546 5.79501 5.81357 5.95772
6.16256 6.17067 6.18728 6.33358 6.40067 6.51261 6.59969 6.74376
6.84187 7.00580 7.63023 7.74372 7.75697 7.96458 8.36994 8.44418
9.01196 9.58790 11.09052
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.043124 B = 0.001423 C = 0.001405
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 649.134415 B =19676.683277 C =19927.213400
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.057 3.943
3 Si 0.893 3.107
4 H -0.280 1.280
5 H -0.286 1.286
6 H -0.274 1.274
7 C -0.523 4.523
8 H 0.055 0.945
9 C 0.023 3.977
10 C -0.121 4.121
11 C 0.115 3.885
12 N -0.729 5.729
13 C 0.504 3.496
14 O -0.546 6.546
15 C -0.141 4.141
16 C -0.097 4.097
17 C -0.082 4.082
18 C -0.081 4.081
19 C -0.112 4.112
20 C -0.119 4.119
21 C -0.059 4.059
22 C -0.118 4.118
23 C -0.177 4.177
24 C -0.170 4.170
25 C -0.112 4.112
26 C -0.112 4.112
27 H 0.261 0.739
28 H 0.019 0.981
29 H 0.019 0.981
30 H 0.054 0.946
31 H 0.054 0.946
32 H 0.063 0.937
33 H 0.063 0.937
34 H 0.398 0.602
35 H 0.092 0.908
36 H 0.092 0.908
37 H 0.071 0.929
38 H 0.071 0.929
39 H 0.073 0.927
40 H 0.073 0.927
41 H 0.122 0.878
42 H 0.121 0.879
43 H 0.112 0.888
44 H 0.099 0.901
45 H 0.097 0.903
46 H 0.097 0.903
47 H 0.095 0.905
48 H 0.120 0.880
49 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.945 -33.869 0.518 34.577
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.144 4.144
3 Si 0.721 3.279
4 H -0.207 1.207
5 H -0.212 1.212
6 H -0.199 1.199
7 C -0.561 4.561
8 H 0.073 0.927
9 C -0.014 4.014
10 C -0.159 4.159
11 C -0.007 4.007
12 N -0.379 5.379
13 C 0.290 3.710
14 O -0.423 6.423
15 C -0.181 4.181
16 C -0.135 4.135
17 C -0.119 4.119
18 C -0.081 4.081
19 C -0.130 4.130
20 C -0.137 4.137
21 C -0.059 4.059
22 C -0.136 4.136
23 C -0.214 4.214
24 C -0.207 4.207
25 C -0.130 4.130
26 C -0.130 4.130
27 H 0.071 0.929
28 H 0.037 0.963
29 H 0.037 0.963
30 H 0.072 0.928
31 H 0.072 0.928
32 H 0.081 0.919
33 H 0.081 0.919
34 H 0.232 0.768
35 H 0.110 0.890
36 H 0.110 0.890
37 H 0.090 0.910
38 H 0.090 0.910
39 H 0.091 0.909
40 H 0.091 0.909
41 H 0.140 0.860
42 H 0.139 0.861
43 H 0.130 0.870
44 H 0.117 0.883
45 H 0.116 0.884
46 H 0.115 0.885
47 H 0.114 0.886
48 H 0.138 0.862
49 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges 5.916 -33.890 0.524 34.407
hybrid contribution 0.843 1.134 -0.038 1.414
sum 6.759 -32.756 0.486 33.450
Atomic orbital electron populations
1.69968 1.06067 1.26687 1.50536 1.25028 0.94849 0.99295 0.95254
0.86582 0.79802 0.83434 0.78098 1.20655 1.21190 1.19893 1.21208
0.92989 0.90961 1.50981 0.92650 1.19036 0.93869 0.90885 0.97653
1.21886 0.99746 0.93409 1.00824 1.21631 0.91950 0.85247 1.01900
1.46258 1.10732 1.06086 1.74867 1.20690 0.89813 0.84188 0.76271
1.90704 1.17100 1.84879 1.49651 1.21700 0.98495 0.93669 1.04274
1.21303 0.97303 0.90848 1.04069 1.20658 0.97184 0.91093 1.02977
1.19885 0.98794 0.96286 0.93149 1.21028 0.98798 0.95470 0.97726
1.21003 0.99152 0.95990 0.97582 1.19100 0.98516 0.94924 0.93380
1.21040 1.02594 0.92440 0.97490 1.23081 0.98429 1.03795 0.96114
1.23032 0.97679 0.96180 1.03817 1.20918 0.98981 0.95737 0.97364
1.21039 0.98827 0.95442 0.97738 0.92924 0.96291 0.96273 0.92751
0.92760 0.91870 0.91880 0.76850 0.89009 0.88998 0.91002 0.91010
0.90858 0.90885 0.86020 0.86133 0.87036 0.88308 0.88423 0.88502
0.88615 0.86157 0.85953
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.88 13.29 55.43 0.74 -26.15 16
2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16
3 Si 0.89 21.48 29.54 -169.99 -5.02 16.45 16
4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16
5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16
7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16
8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16
9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16
10 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16
11 C 0.12 2.05 5.67 -4.04 -0.02 2.03 16
12 N -0.73 -10.26 5.56 -60.29 -0.33 -10.60 16
13 C 0.50 7.22 7.83 -10.98 -0.09 7.14 16
14 O -0.55 -10.26 15.98 5.56 0.09 -10.17 16
15 C -0.14 -1.31 5.70 -27.89 -0.16 -1.47 16
16 C -0.10 -0.95 4.49 -26.73 -0.12 -1.07 16
17 C -0.08 -0.62 5.35 -27.88 -0.15 -0.76 16
18 C -0.08 -0.72 5.13 -104.63 -0.54 -1.25 16
19 C -0.11 -0.98 9.70 -39.59 -0.38 -1.36 16
20 C -0.12 -1.01 9.30 -39.59 -0.37 -1.38 16
21 C -0.06 -0.50 5.61 -104.62 -0.59 -1.09 16
22 C -0.12 -0.80 6.04 -91.77 -0.55 -1.35 16
23 C -0.18 -1.03 9.86 -26.70 -0.26 -1.29 16
24 C -0.17 -0.96 10.17 -26.69 -0.27 -1.23 16
25 C -0.11 -0.95 9.74 -39.58 -0.39 -1.33 16
26 C -0.11 -0.97 9.70 -39.58 -0.38 -1.36 16
27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16
28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
29 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16
30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16
31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16
32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
34 H 0.40 4.38 8.47 -40.82 -0.35 4.03 16
35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16
36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16
37 H 0.07 0.82 8.10 -51.93 -0.42 0.39 16
38 H 0.07 0.82 8.10 -51.93 -0.42 0.39 16
39 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16
40 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16
41 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16
42 H 0.12 0.83 6.02 -52.49 -0.32 0.52 16
43 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16
44 H 0.10 0.56 6.18 -51.93 -0.32 0.24 16
45 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16
46 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16
47 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16
48 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16
49 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16
LS Contribution 405.75 15.07 6.11 6.11
Total: -1.00 -33.34 405.75 -11.92 -45.27
By element:
Atomic # 1 Polarization: 8.88 SS G_CDS: -8.55 Total: 0.33 kcal
Atomic # 6 Polarization: -16.30 SS G_CDS: -4.96 Total: -21.26 kcal
Atomic # 7 Polarization: -37.14 SS G_CDS: 0.40 Total: -36.74 kcal
Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal
Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal
Total LS contribution 6.11 Total: 6.11 kcal
Total: -33.34 -11.92 -45.27 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000888814310.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.433 kcal
(2) G-P(sol) polarization free energy of solvation -33.341 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.908 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.925 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.265 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.833 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds