Wall clock time and date at job start Tue Mar 31 2020 11:26:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86803 * 120.00123 * 2 1
4 4 H 1.48501 * 109.47151 * 269.99985 * 3 2 1
5 5 H 1.48498 * 109.47184 * 29.99939 * 3 2 1
6 6 H 1.48498 * 109.47171 * 149.99913 * 3 2 1
7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3
8 8 H 1.08005 * 120.00335 * 180.02562 * 7 2 1
9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1
10 10 C 1.53006 * 109.46942 * 179.97438 * 9 7 2
11 11 C 1.53002 * 109.46886 * 180.02562 * 10 9 7
12 12 N 1.46496 * 109.47045 * 180.02562 * 11 10 9
13 13 C 1.34784 * 120.00155 * 180.02562 * 12 11 10
14 14 O 1.21279 * 119.99673 * 359.97438 * 13 12 11
15 15 C 1.50696 * 120.00109 * 179.97438 * 13 12 11
16 16 C 1.52997 * 109.47055 * 179.97438 * 15 13 12
17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 13
18 18 C 1.50698 * 109.47184 * 179.97438 * 17 16 15
19 19 C 1.38227 * 120.00438 * 269.72991 * 18 17 16
20 20 C 1.38237 * 120.00073 * 179.78722 * 19 18 17
21 21 C 1.38226 * 119.99922 * 0.44109 * 20 19 18
22 22 C 1.50705 * 120.00134 * 179.83450 * 21 20 19
23 23 C 1.52999 * 117.49868 * 8.72220 * 22 21 20
24 24 C 1.53001 * 117.49690 * 300.06550 * 22 21 20
25 25 C 1.38239 * 120.00029 * 359.81232 * 21 20 19
26 26 C 1.38228 * 120.00077 * 359.97438 * 25 21 20
27 27 H 0.96997 * 119.99752 * 0.02562 * 1 2 3
28 28 H 1.08998 * 109.47224 * 60.00304 * 9 7 2
29 29 H 1.09001 * 109.47354 * 299.99371 * 9 7 2
30 30 H 1.09001 * 109.47377 * 60.00128 * 10 9 7
31 31 H 1.08996 * 109.47261 * 299.99586 * 10 9 7
32 32 H 1.09001 * 109.47600 * 59.99545 * 11 10 9
33 33 H 1.09004 * 109.47006 * 299.99766 * 11 10 9
34 34 H 0.97002 * 120.00100 * 359.97438 * 12 11 10
35 35 H 1.09001 * 109.47324 * 59.99162 * 15 13 12
36 36 H 1.09004 * 109.47043 * 299.99530 * 15 13 12
37 37 H 1.09001 * 109.46832 * 59.99966 * 16 15 13
38 38 H 1.08993 * 109.47194 * 299.99487 * 16 15 13
39 39 H 1.09001 * 109.46801 * 300.00272 * 17 16 15
40 40 H 1.09001 * 109.46998 * 59.99868 * 17 16 15
41 41 H 1.08003 * 119.99904 * 359.97438 * 19 18 17
42 42 H 1.07996 * 119.99821 * 180.27622 * 20 19 18
43 43 H 1.08996 * 115.55135 * 154.39785 * 22 21 20
44 44 H 1.09005 * 117.49548 * 0.02562 * 23 22 21
45 45 H 1.08998 * 117.50077 * 145.01921 * 23 22 21
46 46 H 1.09000 * 117.50038 * 214.97976 * 24 22 21
47 47 H 1.09002 * 117.50045 * 359.97438 * 24 22 21
48 48 H 1.07999 * 119.99576 * 179.97438 * 25 21 20
49 49 H 1.07994 * 120.00203 * 180.02562 * 26 25 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4467 2.6527 0.7000
6 1 3.5468 1.4402 0.7000
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0010
9 6 1.2510 -2.4991 0.0005
10 6 2.2454 -3.6621 0.0005
11 6 1.4803 -4.9871 -0.0001
12 7 2.4323 -6.1006 0.0005
13 6 1.9830 -7.3713 -0.0004
14 8 0.7906 -7.5929 -0.0013
15 6 2.9623 -8.5168 -0.0004
16 6 2.1973 -9.8417 -0.0009
17 6 3.1916 -11.0047 -0.0015
18 6 2.4381 -12.3098 -0.0014
19 6 2.0978 -12.9114 1.1957
20 6 1.4028 -14.1064 1.1958
21 6 1.0560 -14.7042 -0.0013
22 6 0.3016 -16.0088 -0.0013
23 6 -0.2294 -16.5178 1.3403
24 6 0.9651 -17.2086 0.6777
25 6 1.4008 -14.1052 -1.1985
26 6 2.0920 -12.9081 -1.1986
27 1 -0.4849 0.8400 -0.0004
28 1 0.6248 -2.5571 -0.8897
29 1 0.6241 -2.5567 0.8903
30 1 2.8720 -3.6044 0.8905
31 1 2.8720 -3.6044 -0.8894
32 1 0.8539 -5.0446 -0.8903
33 1 0.8534 -5.0451 0.8897
34 1 3.3860 -5.9234 0.0008
35 1 3.5885 -8.4594 0.8900
36 1 3.5895 -8.4586 -0.8900
37 1 1.5709 -9.8992 -0.8911
38 1 1.5705 -9.8997 0.8889
39 1 3.8182 -10.9465 -0.8915
40 1 3.8183 -10.9473 0.8885
41 1 2.3724 -12.4464 2.1310
42 1 1.1331 -14.5741 2.1311
43 1 -0.3022 -16.2027 -0.8878
44 1 -0.0333 -15.9089 2.2229
45 1 -1.1823 -17.0469 1.3364
46 1 0.7976 -18.1919 0.2382
47 1 1.9476 -17.0545 1.1241
48 1 1.1302 -14.5726 -2.1337
49 1 2.3610 -12.4399 -2.1338
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000888814310.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:26:39
Heat of formation + Delta-G solvation = -46.083261 kcal
Electronic energy + Delta-G solvation = -23812.944314 eV
Core-core repulsion = 20317.170847 eV
Total energy + Delta-G solvation = -3495.773467 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-40.84323 -40.54081 -38.01443 -37.01226 -35.47880 -35.17370 -33.10902 -31.96274
-31.70537 -29.03945 -27.67479 -25.22029 -24.19287 -23.67437 -23.04173 -22.34188
-22.30982 -21.02457 -20.91454 -18.56220 -18.03169 -17.55233 -17.06816 -16.85345
-16.55494 -16.40139 -16.04059 -15.83687 -15.44394 -15.01349 -14.72215 -14.55745
-14.32463 -14.22301 -14.08229 -13.76717 -13.53310 -13.30034 -12.85139 -12.80934
-12.69713 -12.55274 -12.43380 -12.40024 -12.35917 -11.93552 -11.77563 -11.67886
-11.59003 -11.53305 -11.44628 -11.24653 -11.22127 -10.77780 -10.55942 -10.06708
-9.80550 -9.25306 -8.19835 -6.31755 0.39731 0.52081 1.41819 1.43267
1.54280 1.69955 2.27368 2.43211 2.67973 3.13994 3.16824 3.63310
3.81491 3.86082 3.92362 3.98345 4.10300 4.13653 4.18253 4.18564
4.21292 4.33307 4.34849 4.54576 4.56183 4.64029 4.67104 4.74480
4.77564 4.82544 4.90664 4.93562 4.95799 5.02502 5.13067 5.13935
5.16406 5.21189 5.24270 5.28065 5.41579 5.47887 5.54472 5.56352
5.69607 5.72776 5.77461 5.83394 6.14482 6.21457 6.64136 6.85959
7.33309 7.38248 8.92319
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.043124 B = 0.001423 C = 0.001405
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 649.134415 B =19676.683277 C =19927.213400
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.936 5.936
2 C -0.003 4.003
3 Si 0.968 3.032
4 H -0.272 1.272
5 H -0.285 1.285
6 H -0.259 1.259
7 C -0.542 4.542
8 H 0.068 0.932
9 C 0.022 3.978
10 C -0.101 4.101
11 C 0.128 3.872
12 N -0.717 5.717
13 C 0.499 3.501
14 O -0.598 6.598
15 C -0.128 4.128
16 C -0.093 4.093
17 C -0.072 4.072
18 C -0.096 4.096
19 C -0.124 4.124
20 C -0.132 4.132
21 C -0.069 4.069
22 C -0.132 4.132
23 C -0.177 4.177
24 C -0.163 4.163
25 C -0.126 4.126
26 C -0.124 4.124
27 H 0.263 0.737
28 H -0.010 1.010
29 H -0.009 1.009
30 H 0.069 0.931
31 H 0.069 0.931
32 H 0.045 0.955
33 H 0.045 0.955
34 H 0.417 0.583
35 H 0.123 0.877
36 H 0.123 0.877
37 H 0.049 0.951
38 H 0.049 0.951
39 H 0.090 0.910
40 H 0.089 0.911
41 H 0.132 0.868
42 H 0.131 0.869
43 H 0.116 0.884
44 H 0.098 0.902
45 H 0.107 0.893
46 H 0.110 0.890
47 H 0.092 0.908
48 H 0.132 0.868
49 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.769 -34.501 0.561 35.862
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.576 5.576
2 C -0.201 4.201
3 Si 0.792 3.208
4 H -0.198 1.198
5 H -0.211 1.211
6 H -0.183 1.183
7 C -0.580 4.580
8 H 0.086 0.914
9 C -0.016 4.016
10 C -0.139 4.139
11 C 0.004 3.996
12 N -0.370 5.370
13 C 0.288 3.712
14 O -0.479 6.479
15 C -0.168 4.168
16 C -0.131 4.131
17 C -0.109 4.109
18 C -0.096 4.096
19 C -0.142 4.142
20 C -0.149 4.149
21 C -0.069 4.069
22 C -0.150 4.150
23 C -0.214 4.214
24 C -0.200 4.200
25 C -0.144 4.144
26 C -0.142 4.142
27 H 0.072 0.928
28 H 0.009 0.991
29 H 0.009 0.991
30 H 0.087 0.913
31 H 0.087 0.913
32 H 0.063 0.937
33 H 0.063 0.937
34 H 0.254 0.746
35 H 0.141 0.859
36 H 0.141 0.859
37 H 0.068 0.932
38 H 0.068 0.932
39 H 0.108 0.892
40 H 0.108 0.892
41 H 0.150 0.850
42 H 0.149 0.851
43 H 0.134 0.866
44 H 0.116 0.884
45 H 0.126 0.874
46 H 0.128 0.872
47 H 0.111 0.889
48 H 0.150 0.850
49 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges 8.796 -34.539 0.566 35.646
hybrid contribution -0.103 1.276 -0.051 1.281
sum 8.693 -33.263 0.515 34.384
Atomic orbital electron populations
1.70119 1.08008 1.27793 1.51680 1.26035 0.95728 1.03602 0.94711
0.85402 0.78699 0.78193 0.78473 1.19800 1.21063 1.18324 1.21691
0.93793 0.91981 1.50522 0.91424 1.18962 0.94504 0.93159 0.94951
1.21592 0.98374 0.91738 1.02182 1.21188 0.92168 0.86008 1.00266
1.46052 1.11122 1.05199 1.74579 1.21665 0.90011 0.84991 0.74551
1.90690 1.19759 1.85557 1.51871 1.21737 0.97361 0.90448 1.07206
1.21217 0.97536 0.92349 1.01972 1.20604 0.96545 0.89168 1.04588
1.20116 0.99251 0.96997 0.93219 1.21274 0.98909 0.95726 0.98323
1.21224 0.99321 0.96213 0.98176 1.19361 0.98466 0.95611 0.93436
1.21104 1.03283 0.92288 0.98287 1.23159 0.99026 1.03673 0.95514
1.23077 0.97458 0.96264 1.03200 1.21173 0.99151 0.96002 0.98045
1.21286 0.98899 0.95678 0.98335 0.92833 0.99113 0.99094 0.91263
0.91256 0.93673 0.93686 0.74563 0.85878 0.85857 0.93201 0.93228
0.89190 0.89235 0.84983 0.85121 0.86565 0.88387 0.87440 0.87210
0.88917 0.84985 0.84881
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -57.46 13.29 21.45 0.28 -57.17 16
2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16
3 Si 0.97 43.72 29.54 68.60 2.03 45.75 16
4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16
5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16
6 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16
7 C -0.54 -30.31 9.11 25.60 0.23 -30.07 16
8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16
9 C 0.02 1.15 4.97 29.85 0.15 1.30 16
10 C -0.10 -3.89 5.27 30.60 0.16 -3.73 16
11 C 0.13 4.58 5.67 86.38 0.49 5.07 16
12 N -0.72 -19.05 5.56 -463.06 -2.57 -21.62 16
13 C 0.50 13.73 7.83 87.65 0.69 14.42 16
14 O -0.60 -22.92 15.98 -3.03 -0.05 -22.97 16
15 C -0.13 -2.01 5.70 29.85 0.17 -1.84 16
16 C -0.09 -1.70 4.49 30.60 0.14 -1.57 16
17 C -0.07 -0.92 5.35 29.85 0.16 -0.76 16
18 C -0.10 -1.61 5.13 -19.87 -0.10 -1.71 16
19 C -0.12 -2.10 9.70 22.27 0.22 -1.88 16
20 C -0.13 -2.19 9.30 22.27 0.21 -1.98 16
21 C -0.07 -1.15 5.61 -19.87 -0.11 -1.26 16
22 C -0.13 -1.72 6.04 -11.54 -0.07 -1.78 16
23 C -0.18 -1.90 9.86 30.62 0.30 -1.60 16
24 C -0.16 -1.67 10.17 30.62 0.31 -1.36 16
25 C -0.13 -2.10 9.74 22.27 0.22 -1.88 16
26 C -0.12 -2.08 9.70 22.27 0.22 -1.87 16
27 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16
28 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16
29 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16
30 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16
31 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16
32 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16
33 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16
34 H 0.42 7.87 8.47 -92.71 -0.79 7.08 16
35 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16
36 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16
37 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16
38 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16
39 H 0.09 0.87 8.09 -2.39 -0.02 0.86 16
40 H 0.09 0.87 8.08 -2.39 -0.02 0.85 16
41 H 0.13 1.82 8.06 -2.91 -0.02 1.79 16
42 H 0.13 1.77 6.02 -2.91 -0.02 1.75 16
43 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16
44 H 0.10 1.05 6.18 -2.38 -0.01 1.03 16
45 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16
46 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16
47 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16
48 H 0.13 1.74 8.06 -2.91 -0.02 1.72 16
49 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16
Total: -1.00 -74.60 405.75 3.65 -70.95
By element:
Atomic # 1 Polarization: 17.16 SS G_CDS: 0.13 Total: 17.29 kcal
Atomic # 6 Polarization: -36.05 SS G_CDS: 3.83 Total: -32.22 kcal
Atomic # 7 Polarization: -76.51 SS G_CDS: -2.29 Total: -78.80 kcal
Atomic # 8 Polarization: -22.92 SS G_CDS: -0.05 Total: -22.97 kcal
Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal
Total: -74.60 3.65 -70.95 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000888814310.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.864 kcal
(2) G-P(sol) polarization free energy of solvation -74.601 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.737 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.654 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.948 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.083 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds