Wall clock time and date at job start Tue Mar 31 2020 11:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99997 * 2 1 4 4 H 1.48500 * 109.46893 * 270.00112 * 3 2 1 5 5 H 1.48501 * 109.47141 * 29.99583 * 3 2 1 6 6 H 1.48495 * 109.47341 * 149.99822 * 3 2 1 7 7 C 1.37879 * 120.00416 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99472 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00331 * 179.97438 * 7 2 1 10 10 C 1.52991 * 109.47155 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47390 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00169 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00145 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99658 * 180.02562 * 13 11 10 15 15 H 1.09002 * 108.87547 * 35.00349 * 14 13 11 16 16 C 1.54247 * 108.81929 * 276.44125 * 14 13 11 17 17 C 1.50471 * 108.52277 * 159.32022 * 16 14 13 18 18 C 1.54070 * 112.50007 * 94.15184 * 17 16 14 19 19 C 1.54067 * 112.81524 * 318.28049 * 18 17 16 20 20 H 1.08997 * 108.79824 * 79.00738 * 19 18 17 21 21 C 1.50700 * 108.87706 * 197.50869 * 19 18 17 22 22 C 1.38234 * 119.99686 * 62.70016 * 21 19 18 23 23 C 1.38237 * 119.99253 * 179.78924 * 22 21 19 24 24 C 1.38232 * 120.00605 * 0.44009 * 23 22 21 25 25 C 1.38238 * 119.99834 * 359.81429 * 24 23 22 26 26 C 1.38231 * 119.99887 * 242.97361 * 21 19 18 27 27 C 1.50473 * 112.49554 * 318.28510 * 19 18 17 28 28 C 1.45541 * 108.89589 * 153.60681 * 14 13 11 29 29 H 0.97004 * 119.99974 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46797 * 59.99961 * 9 7 2 31 31 H 1.09001 * 109.47337 * 300.00334 * 9 7 2 32 32 H 1.09005 * 109.47085 * 60.00400 * 10 9 7 33 33 H 1.09001 * 109.47485 * 300.00505 * 10 9 7 34 34 H 0.96999 * 120.00272 * 0.02562 * 13 11 10 35 35 H 1.08999 * 109.62812 * 279.02987 * 16 14 13 36 36 H 1.08997 * 109.62934 * 39.60797 * 16 14 13 37 37 H 1.08999 * 108.87692 * 333.36873 * 17 16 14 38 38 H 1.09000 * 108.87644 * 214.92661 * 17 16 14 39 39 H 1.08999 * 108.80889 * 197.42107 * 18 17 16 40 40 H 1.08998 * 108.72729 * 79.08022 * 18 17 16 41 41 H 1.07996 * 120.00235 * 0.02562 * 22 21 19 42 42 H 1.08009 * 119.99587 * 180.27494 * 23 22 21 43 43 H 1.07997 * 120.00307 * 179.83411 * 24 23 22 44 44 H 1.07997 * 120.00148 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.00138 * 359.97438 * 26 21 19 46 46 H 1.09001 * 109.62998 * 334.44820 * 27 19 18 47 47 H 1.09000 * 109.63095 * 213.86249 * 27 19 18 48 48 H 1.09000 * 108.89382 * 303.34507 * 28 14 13 49 49 H 1.09001 * 108.89364 * 61.93052 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 0.0014 11 6 5.5285 -2.6364 0.0014 12 8 6.1350 -1.5861 0.0009 13 7 6.2025 -3.8037 0.0020 14 6 7.6675 -3.8036 0.0027 15 1 8.0198 -2.9586 0.5942 16 6 8.1657 -3.6402 -1.4480 17 6 9.5833 -3.1370 -1.4127 18 6 10.6160 -4.2778 -1.4896 19 6 10.2291 -5.4931 -0.6254 20 1 9.4773 -6.0768 -1.1566 21 6 11.4508 -6.3497 -0.4138 22 6 12.5430 -5.8405 0.2635 23 6 13.6619 -6.6278 0.4613 24 6 13.6923 -7.9210 -0.0260 25 6 12.6021 -8.4283 -0.7079 26 6 11.4814 -7.6426 -0.9020 27 6 9.6767 -5.0932 0.7160 28 6 8.1386 -5.0368 0.6153 29 1 -0.4850 0.8401 -0.0004 30 1 3.8752 -0.6795 0.8895 31 1 3.8746 -0.6807 -0.8905 32 1 3.6579 -3.1512 -0.8880 33 1 3.6585 -3.1493 0.8920 34 1 5.7175 -4.6437 0.0021 35 1 8.1315 -4.6032 -1.9575 36 1 7.5353 -2.9225 -1.9729 37 1 9.7380 -2.5831 -0.4868 38 1 9.7392 -2.4628 -2.2549 39 1 11.5819 -3.9007 -1.1537 40 1 10.7061 -4.5988 -2.5274 41 1 12.5206 -4.8291 0.6414 42 1 14.5136 -6.2315 0.9944 43 1 14.5675 -8.5351 0.1262 44 1 12.6259 -9.4385 -1.0890 45 1 10.6296 -8.0390 -1.4346 46 1 10.0616 -4.1117 0.9927 47 1 9.9678 -5.8287 1.4659 48 1 7.7162 -5.1172 1.6169 49 1 7.7941 -5.8814 0.0186 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888904589.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:10 Heat of formation + Delta-G solvation = -43.259337 kcal Electronic energy + Delta-G solvation = -25716.948113 eV Core-core repulsion = 22221.297100 eV Total energy + Delta-G solvation = -3495.651013 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.54848 -39.46842 -38.00476 -34.90009 -33.44734 -32.81783 -31.85149 -31.23276 -31.07197 -29.21214 -26.24878 -25.15695 -24.44086 -22.99645 -21.90042 -21.33187 -20.73166 -19.55507 -19.25247 -17.28445 -17.18908 -16.43596 -15.98384 -15.75813 -15.39617 -15.12864 -14.72063 -14.37505 -14.23356 -14.08021 -13.75076 -13.57362 -13.29210 -13.19926 -13.06304 -12.65991 -12.54587 -12.34724 -12.24712 -12.01491 -11.46274 -11.42737 -11.36110 -11.14150 -10.93076 -10.87445 -10.74819 -10.51812 -10.44892 -10.12943 -10.01738 -9.76348 -9.24143 -9.19162 -9.11943 -8.98383 -8.80025 -8.49135 -6.01593 -4.00104 1.04248 1.07781 3.17706 3.38944 3.44846 3.46167 3.46675 3.56691 4.26782 4.30450 4.52298 4.56558 4.64754 4.67360 4.78714 4.90078 4.93902 5.00429 5.00576 5.12755 5.16298 5.25229 5.25859 5.33945 5.38980 5.49885 5.56233 5.65642 5.68109 5.74456 5.78881 5.83897 5.89216 5.97479 6.02704 6.08962 6.11538 6.14060 6.17123 6.19582 6.24866 6.28224 6.38351 6.68893 6.71818 6.76053 7.39012 7.46166 7.79583 7.85946 8.52268 8.72144 9.01748 9.61620 11.11217 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.038701 B = 0.002116 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.326586 B =13229.156863 C =13530.248667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.072 0.928 9 C 0.002 3.998 10 C -0.123 4.123 11 C 0.510 3.490 12 O -0.540 6.540 13 N -0.742 5.742 14 C 0.146 3.854 15 H 0.082 0.918 16 C -0.125 4.125 17 C -0.116 4.116 18 C -0.107 4.107 19 C -0.048 4.048 20 H 0.078 0.922 21 C -0.073 4.073 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.129 4.129 25 C -0.119 4.119 26 C -0.119 4.119 27 C -0.103 4.103 28 C -0.127 4.127 29 H 0.263 0.737 30 H 0.023 0.977 31 H 0.018 0.982 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.396 0.604 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.069 0.931 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.954 -17.994 -0.889 33.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.036 4.036 10 C -0.163 4.163 11 C 0.299 3.701 12 O -0.416 6.416 13 N -0.395 5.395 14 C 0.042 3.958 15 H 0.100 0.900 16 C -0.164 4.164 17 C -0.154 4.154 18 C -0.145 4.145 19 C -0.066 4.066 20 H 0.096 0.904 21 C -0.073 4.073 22 C -0.133 4.133 23 C -0.137 4.137 24 C -0.147 4.147 25 C -0.137 4.137 26 C -0.137 4.137 27 C -0.141 4.141 28 C -0.165 4.165 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.037 0.963 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.230 0.770 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.090 0.910 47 H 0.088 0.912 48 H 0.088 0.912 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 28.224 -17.087 -0.880 33.005 hybrid contribution 0.141 0.355 -0.072 0.389 sum 28.366 -16.732 -0.952 32.946 Atomic orbital electron populations 1.69914 1.06285 1.26934 1.51147 1.24978 0.94712 0.99232 0.94365 0.86794 0.80625 0.83394 0.78730 1.20262 1.21466 1.18530 1.21127 0.89346 0.94535 1.51237 0.90965 1.19356 0.96337 0.90306 0.97602 1.21669 0.88264 1.03167 1.03222 1.21501 0.91481 0.82962 0.74201 1.90644 1.70795 1.31476 1.48710 1.46411 1.06437 1.09109 1.77495 1.19835 0.80665 0.98994 0.96348 0.89993 1.21725 0.96216 1.01684 0.96747 1.21261 0.94128 0.97474 1.02534 1.22017 0.98778 0.94286 0.99425 1.20081 0.94157 0.95726 0.96675 0.90374 1.20028 0.95559 0.94445 0.97237 1.21036 0.93161 0.99927 0.99223 1.21158 0.98231 0.94416 0.99925 1.21136 0.98579 0.95931 0.99020 1.21148 0.93712 0.99743 0.99127 1.21109 0.98385 0.93902 1.00282 1.21313 0.94128 1.02313 0.96323 1.20751 0.96214 0.97893 1.01621 0.92748 0.95877 0.96324 0.89735 0.89724 0.77007 0.91745 0.91143 0.91774 0.91945 0.91956 0.92175 0.86054 0.86233 0.86351 0.86240 0.86171 0.91028 0.91178 0.91246 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.78 27.47 -169.99 -4.67 18.11 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.26 -6.75 6.54 56.52 0.37 -6.38 16 7 C -0.52 -15.13 9.66 -34.44 -0.33 -15.47 16 8 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 9 C 0.00 0.05 3.33 -27.89 -0.09 -0.05 16 10 C -0.12 -2.40 5.64 -27.89 -0.16 -2.56 16 11 C 0.51 9.21 7.62 -10.98 -0.08 9.13 16 12 O -0.54 -11.88 15.63 5.55 0.09 -11.80 16 13 N -0.74 -9.67 5.01 -56.62 -0.28 -9.96 16 14 C 0.15 1.67 1.95 -70.79 -0.14 1.53 16 15 H 0.08 1.13 6.87 -51.93 -0.36 0.77 16 16 C -0.13 -1.37 5.18 -27.34 -0.14 -1.51 16 17 C -0.12 -1.11 5.31 -27.44 -0.15 -1.26 16 18 C -0.11 -0.85 5.20 -25.62 -0.13 -0.98 16 19 C -0.05 -0.36 1.86 -92.48 -0.17 -0.53 16 20 H 0.08 0.58 6.32 -51.93 -0.33 0.25 16 21 C -0.07 -0.57 4.44 -104.63 -0.46 -1.03 16 22 C -0.12 -0.88 8.55 -39.58 -0.34 -1.22 16 23 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 24 C -0.13 -0.89 10.05 -39.58 -0.40 -1.29 16 25 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 26 C -0.12 -0.90 9.66 -39.58 -0.38 -1.28 16 27 C -0.10 -0.79 4.75 -27.35 -0.13 -0.92 16 28 C -0.13 -1.08 4.61 -29.60 -0.14 -1.22 16 29 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 30 H 0.02 0.61 7.15 -51.93 -0.37 0.23 16 31 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 32 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.40 4.06 8.57 -40.82 -0.35 3.71 16 35 H 0.06 0.62 6.97 -51.93 -0.36 0.25 16 36 H 0.07 0.97 7.95 -51.93 -0.41 0.56 16 37 H 0.06 0.65 6.63 -51.93 -0.34 0.31 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.48 7.01 -51.93 -0.36 0.11 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.12 0.82 7.72 -52.49 -0.41 0.41 16 42 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 43 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 44 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 45 H 0.12 0.76 7.93 -52.49 -0.42 0.34 16 46 H 0.07 0.57 6.98 -51.93 -0.36 0.21 16 47 H 0.07 0.53 7.70 -51.93 -0.40 0.13 16 48 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.07 0.50 7.46 -51.93 -0.39 0.11 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -33.97 380.19 -10.72 -44.69 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -8.22 Total: -0.17 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -4.14 Total: -19.20 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.49 Total: -37.36 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.67 Total: 18.11 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.97 -10.72 -44.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888904589.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.430 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds