Wall clock time and date at job start Tue Mar 31 2020 11:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99997 * 2 1 4 4 H 1.48500 * 109.46893 * 270.00112 * 3 2 1 5 5 H 1.48501 * 109.47141 * 29.99583 * 3 2 1 6 6 H 1.48495 * 109.47341 * 149.99822 * 3 2 1 7 7 C 1.37879 * 120.00416 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99472 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00331 * 179.97438 * 7 2 1 10 10 C 1.52991 * 109.47155 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47390 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00169 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00145 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99658 * 180.02562 * 13 11 10 15 15 H 1.09002 * 108.87547 * 35.00349 * 14 13 11 16 16 C 1.54247 * 108.81929 * 276.44125 * 14 13 11 17 17 C 1.50471 * 108.52277 * 159.32022 * 16 14 13 18 18 C 1.54070 * 112.50007 * 94.15184 * 17 16 14 19 19 C 1.54067 * 112.81524 * 318.28049 * 18 17 16 20 20 H 1.08997 * 108.79824 * 79.00738 * 19 18 17 21 21 C 1.50700 * 108.87706 * 197.50869 * 19 18 17 22 22 C 1.38234 * 119.99686 * 62.70016 * 21 19 18 23 23 C 1.38237 * 119.99253 * 179.78924 * 22 21 19 24 24 C 1.38232 * 120.00605 * 0.44009 * 23 22 21 25 25 C 1.38238 * 119.99834 * 359.81429 * 24 23 22 26 26 C 1.38231 * 119.99887 * 242.97361 * 21 19 18 27 27 C 1.50473 * 112.49554 * 318.28510 * 19 18 17 28 28 C 1.45541 * 108.89589 * 153.60681 * 14 13 11 29 29 H 0.97004 * 119.99974 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46797 * 59.99961 * 9 7 2 31 31 H 1.09001 * 109.47337 * 300.00334 * 9 7 2 32 32 H 1.09005 * 109.47085 * 60.00400 * 10 9 7 33 33 H 1.09001 * 109.47485 * 300.00505 * 10 9 7 34 34 H 0.96999 * 120.00272 * 0.02562 * 13 11 10 35 35 H 1.08999 * 109.62812 * 279.02987 * 16 14 13 36 36 H 1.08997 * 109.62934 * 39.60797 * 16 14 13 37 37 H 1.08999 * 108.87692 * 333.36873 * 17 16 14 38 38 H 1.09000 * 108.87644 * 214.92661 * 17 16 14 39 39 H 1.08999 * 108.80889 * 197.42107 * 18 17 16 40 40 H 1.08998 * 108.72729 * 79.08022 * 18 17 16 41 41 H 1.07996 * 120.00235 * 0.02562 * 22 21 19 42 42 H 1.08009 * 119.99587 * 180.27494 * 23 22 21 43 43 H 1.07997 * 120.00307 * 179.83411 * 24 23 22 44 44 H 1.07997 * 120.00148 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.00138 * 359.97438 * 26 21 19 46 46 H 1.09001 * 109.62998 * 334.44820 * 27 19 18 47 47 H 1.09000 * 109.63095 * 213.86249 * 27 19 18 48 48 H 1.09000 * 108.89382 * 303.34507 * 28 14 13 49 49 H 1.09001 * 108.89364 * 61.93052 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 0.0014 11 6 5.5285 -2.6364 0.0014 12 8 6.1350 -1.5861 0.0009 13 7 6.2025 -3.8037 0.0020 14 6 7.6675 -3.8036 0.0027 15 1 8.0198 -2.9586 0.5942 16 6 8.1657 -3.6402 -1.4480 17 6 9.5833 -3.1370 -1.4127 18 6 10.6160 -4.2778 -1.4896 19 6 10.2291 -5.4931 -0.6254 20 1 9.4773 -6.0768 -1.1566 21 6 11.4508 -6.3497 -0.4138 22 6 12.5430 -5.8405 0.2635 23 6 13.6619 -6.6278 0.4613 24 6 13.6923 -7.9210 -0.0260 25 6 12.6021 -8.4283 -0.7079 26 6 11.4814 -7.6426 -0.9020 27 6 9.6767 -5.0932 0.7160 28 6 8.1386 -5.0368 0.6153 29 1 -0.4850 0.8401 -0.0004 30 1 3.8752 -0.6795 0.8895 31 1 3.8746 -0.6807 -0.8905 32 1 3.6579 -3.1512 -0.8880 33 1 3.6585 -3.1493 0.8920 34 1 5.7175 -4.6437 0.0021 35 1 8.1315 -4.6032 -1.9575 36 1 7.5353 -2.9225 -1.9729 37 1 9.7380 -2.5831 -0.4868 38 1 9.7392 -2.4628 -2.2549 39 1 11.5819 -3.9007 -1.1537 40 1 10.7061 -4.5988 -2.5274 41 1 12.5206 -4.8291 0.6414 42 1 14.5136 -6.2315 0.9944 43 1 14.5675 -8.5351 0.1262 44 1 12.6259 -9.4385 -1.0890 45 1 10.6296 -8.0390 -1.4346 46 1 10.0616 -4.1117 0.9927 47 1 9.9678 -5.8287 1.4659 48 1 7.7162 -5.1172 1.6169 49 1 7.7941 -5.8814 0.0186 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888904589.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:09 Heat of formation + Delta-G solvation = -62.236416 kcal Electronic energy + Delta-G solvation = -25717.771021 eV Core-core repulsion = 22221.297100 eV Total energy + Delta-G solvation = -3496.473921 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.41193 -40.42588 -38.93754 -35.91798 -35.48902 -33.66500 -33.31864 -32.44156 -31.72658 -29.99871 -27.99831 -25.90800 -25.38189 -23.56367 -23.06822 -22.47305 -21.69599 -21.00020 -19.93195 -19.18240 -17.84464 -17.57149 -17.42079 -16.56244 -16.33517 -16.25093 -15.98855 -15.49521 -15.27582 -15.15439 -14.75000 -14.50487 -14.37677 -14.20633 -14.11835 -13.99725 -13.71630 -13.39715 -13.10120 -13.00475 -12.89489 -12.67297 -12.18737 -12.09440 -12.03562 -11.96403 -11.85673 -11.76682 -11.55873 -11.50491 -11.39822 -11.24184 -11.10884 -10.78516 -10.65976 -9.99211 -9.75301 -9.51395 -8.31919 -6.34622 0.52228 0.56446 1.32380 1.34239 1.49547 1.73853 2.28548 2.34466 2.94269 3.03643 3.60747 3.66618 3.81835 3.98497 4.07898 4.18355 4.20697 4.26172 4.29821 4.30267 4.37611 4.39634 4.42986 4.49191 4.51204 4.68311 4.71621 4.74864 4.83749 4.93732 4.99232 5.02670 5.05230 5.20198 5.22616 5.25017 5.28039 5.28965 5.33935 5.36644 5.42761 5.45247 5.49820 5.60671 5.64957 5.66213 5.69649 5.82861 6.19480 6.23433 6.66079 6.71789 7.30697 7.38130 8.83658 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.038701 B = 0.002116 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.326586 B =13229.156863 C =13530.248667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.938 3.062 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.529 4.529 8 H 0.050 0.950 9 C 0.006 3.994 10 C -0.118 4.118 11 C 0.514 3.486 12 O -0.585 6.585 13 N -0.719 5.719 14 C 0.150 3.850 15 H 0.057 0.943 16 C -0.120 4.120 17 C -0.113 4.113 18 C -0.100 4.100 19 C -0.042 4.042 20 H 0.084 0.916 21 C -0.081 4.081 22 C -0.127 4.127 23 C -0.129 4.129 24 C -0.137 4.137 25 C -0.128 4.128 26 C -0.130 4.130 27 C -0.097 4.097 28 C -0.122 4.122 29 H 0.267 0.733 30 H 0.008 0.992 31 H 0.007 0.993 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.414 0.586 35 H 0.084 0.916 36 H 0.039 0.961 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.125 0.875 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.131 0.869 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.797 -19.606 -0.997 35.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.185 4.185 3 Si 0.763 3.237 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.567 4.567 8 H 0.069 0.931 9 C -0.032 4.032 10 C -0.158 4.158 11 C 0.302 3.698 12 O -0.465 6.465 13 N -0.372 5.372 14 C 0.046 3.954 15 H 0.075 0.925 16 C -0.159 4.159 17 C -0.151 4.151 18 C -0.138 4.138 19 C -0.060 4.060 20 H 0.103 0.897 21 C -0.081 4.081 22 C -0.145 4.145 23 C -0.147 4.147 24 C -0.155 4.155 25 C -0.146 4.146 26 C -0.147 4.147 27 C -0.135 4.135 28 C -0.160 4.160 29 H 0.076 0.924 30 H 0.027 0.973 31 H 0.026 0.974 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.251 0.749 35 H 0.103 0.897 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.143 0.857 42 H 0.151 0.849 43 H 0.153 0.847 44 H 0.153 0.847 45 H 0.149 0.851 46 H 0.084 0.916 47 H 0.094 0.906 48 H 0.090 0.910 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 30.077 -18.760 -0.990 35.462 hybrid contribution -0.422 0.763 -0.037 0.873 sum 29.655 -17.996 -1.027 34.704 Atomic orbital electron populations 1.70023 1.07729 1.28068 1.52512 1.25807 0.95513 1.02833 0.94307 0.85832 0.79208 0.79556 0.79129 1.19386 1.20285 1.18687 1.21444 0.91282 0.93713 1.50272 0.93139 1.19208 0.93889 0.93910 0.96237 1.21502 0.89634 0.99748 1.04905 1.21141 0.90854 0.83619 0.74154 1.90632 1.71328 1.33328 1.51245 1.46195 1.07378 1.08381 1.75229 1.19954 0.79174 0.99687 0.96624 0.92494 1.21664 0.96315 1.01838 0.96042 1.21212 0.93901 0.98098 1.01882 1.21942 0.98141 0.93828 0.99857 1.20014 0.94322 0.95361 0.96320 0.89738 1.20070 0.95633 0.94712 0.97692 1.21190 0.93489 1.00318 0.99525 1.21411 0.98621 0.94665 1.00041 1.21424 0.99238 0.96117 0.98708 1.21426 0.93611 1.00560 0.99006 1.21327 0.99038 0.93939 1.00437 1.21256 0.93284 1.02201 0.96733 1.20699 0.96848 0.96710 1.01734 0.92385 0.97313 0.97443 0.88075 0.88087 0.74910 0.89748 0.94227 0.92703 0.92378 0.91680 0.91802 0.85704 0.84913 0.84737 0.84666 0.85080 0.91634 0.90578 0.91017 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.40 13.96 21.45 0.30 -59.10 16 2 C 0.01 0.79 5.47 84.66 0.46 1.25 16 3 Si 0.94 47.32 27.47 68.60 1.88 49.20 16 4 H -0.27 -13.11 7.11 99.48 0.71 -12.41 16 5 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 6 H -0.26 -13.21 6.54 99.48 0.65 -12.56 16 7 C -0.53 -30.84 9.66 25.60 0.25 -30.59 16 8 H 0.05 3.09 7.99 -2.91 -0.02 3.06 16 9 C 0.01 0.28 3.33 29.84 0.10 0.38 16 10 C -0.12 -4.49 5.64 29.84 0.17 -4.32 16 11 C 0.51 18.21 7.62 87.66 0.67 18.87 16 12 O -0.59 -25.95 15.63 -3.04 -0.05 -26.00 16 13 N -0.72 -17.56 5.01 -451.43 -2.26 -19.82 16 14 C 0.15 3.22 1.95 43.14 0.08 3.31 16 15 H 0.06 1.56 6.87 -2.39 -0.02 1.54 16 16 C -0.12 -2.50 5.18 30.20 0.16 -2.35 16 17 C -0.11 -2.09 5.31 30.14 0.16 -1.93 16 18 C -0.10 -1.42 5.20 31.32 0.16 -1.26 16 19 C -0.04 -0.53 1.86 -12.00 -0.02 -0.55 16 20 H 0.08 0.98 6.32 -2.39 -0.02 0.97 16 21 C -0.08 -1.10 4.44 -19.87 -0.09 -1.19 16 22 C -0.13 -1.75 8.55 22.27 0.19 -1.56 16 23 C -0.13 -1.64 10.05 22.27 0.22 -1.42 16 24 C -0.14 -1.64 10.05 22.27 0.22 -1.42 16 25 C -0.13 -1.55 10.05 22.27 0.22 -1.32 16 26 C -0.13 -1.68 9.66 22.27 0.22 -1.46 16 27 C -0.10 -1.29 4.75 30.20 0.14 -1.15 16 28 C -0.12 -1.79 4.61 28.73 0.13 -1.65 16 29 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 30 H 0.01 0.45 7.15 -2.38 -0.02 0.43 16 31 H 0.01 0.38 7.53 -2.39 -0.02 0.36 16 32 H 0.10 3.49 8.14 -2.38 -0.02 3.47 16 33 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 34 H 0.41 7.31 8.57 -92.71 -0.79 6.52 16 35 H 0.08 1.41 6.97 -2.39 -0.02 1.39 16 36 H 0.04 1.08 7.95 -2.39 -0.02 1.06 16 37 H 0.05 1.12 6.63 -2.39 -0.02 1.10 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.06 0.90 7.01 -2.39 -0.02 0.89 16 40 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.13 1.53 7.72 -2.91 -0.02 1.51 16 42 H 0.13 1.22 8.06 -2.91 -0.02 1.19 16 43 H 0.13 1.08 8.06 -2.91 -0.02 1.05 16 44 H 0.14 1.11 8.06 -2.91 -0.02 1.08 16 45 H 0.13 1.32 7.93 -2.91 -0.02 1.30 16 46 H 0.06 0.97 6.98 -2.39 -0.02 0.95 16 47 H 0.08 0.97 7.70 -2.39 -0.02 0.95 16 48 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.09 0.98 7.46 -2.39 -0.02 0.96 16 Total: -1.00 -73.90 380.19 3.40 -70.50 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.08 Total: 13.58 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 3.45 Total: -28.37 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -1.96 Total: -78.92 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.05 Total: -26.00 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 1.88 Total: 49.20 kcal Total: -73.90 3.40 -70.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888904589.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.260 kcal (2) G-P(sol) polarization free energy of solvation -73.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds