Wall clock time and date at job start Tue Mar 31 2020 11:23:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86804 * 120.00087 * 2 1
4 4 H 1.48501 * 109.47126 * 269.99987 * 3 2 1
5 5 H 1.48500 * 109.47187 * 29.99757 * 3 2 1
6 6 H 1.48499 * 109.47129 * 149.99754 * 3 2 1
7 7 C 1.37872 * 119.99852 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00220 * 0.02562 * 7 2 1
9 9 C 1.50709 * 119.99864 * 179.97438 * 7 2 1
10 10 C 1.53035 * 109.45964 * 179.97438 * 9 7 2
11 11 C 1.53191 * 109.31327 * 181.37529 * 10 9 7
12 12 N 1.46926 * 108.89109 * 305.29292 * 11 10 9
13 13 C 1.34773 * 120.63302 * 233.67613 * 12 11 10
14 14 O 1.21283 * 119.99890 * 359.97438 * 13 12 11
15 15 C 1.50700 * 120.00452 * 180.02562 * 13 12 11
16 16 C 1.52997 * 109.47382 * 179.97438 * 15 13 12
17 17 C 1.53001 * 109.46922 * 179.97438 * 16 15 13
18 18 C 1.52997 * 109.46922 * 180.02562 * 17 16 15
19 19 C 1.50700 * 109.47382 * 180.02562 * 18 17 16
20 20 C 1.38244 * 119.99683 * 269.73024 * 19 18 17
21 21 C 1.38231 * 119.99781 * 179.76453 * 20 19 18
22 22 C 1.38239 * 119.99918 * 0.50315 * 21 20 19
23 23 C 1.38237 * 120.00111 * 359.74554 * 22 21 20
24 24 C 1.38229 * 119.99815 * 0.02562 * 23 22 21
25 25 C 1.47207 * 118.55531 * 53.54119 * 12 11 10
26 26 C 1.53038 * 109.44867 * 300.06441 * 9 7 2
27 27 H 0.97003 * 119.99843 * 0.02562 * 1 2 3
28 28 H 1.09004 * 109.45450 * 60.03070 * 9 7 2
29 29 H 1.09003 * 109.49576 * 61.42198 * 10 9 7
30 30 H 1.09000 * 109.52700 * 301.34246 * 10 9 7
31 31 H 1.09002 * 109.58786 * 65.15336 * 11 10 9
32 32 H 1.08996 * 109.58870 * 185.43616 * 11 10 9
33 33 H 1.08998 * 109.46962 * 300.00024 * 15 13 12
34 34 H 1.09003 * 109.46750 * 59.99342 * 15 13 12
35 35 H 1.08998 * 109.47350 * 300.00103 * 16 15 13
36 36 H 1.09004 * 109.46747 * 60.00319 * 16 15 13
37 37 H 1.08998 * 109.47498 * 300.00388 * 17 16 15
38 38 H 1.08996 * 109.47166 * 60.00703 * 17 16 15
39 39 H 1.09001 * 109.47635 * 300.00034 * 18 17 16
40 40 H 1.09003 * 109.47457 * 60.00467 * 18 17 16
41 41 H 1.07995 * 119.99841 * 359.97438 * 20 19 18
42 42 H 1.07998 * 120.00374 * 180.23265 * 21 20 19
43 43 H 1.08002 * 119.99931 * 179.73109 * 22 21 20
44 44 H 1.07995 * 119.99957 * 179.97438 * 23 22 21
45 45 H 1.08001 * 119.99770 * 179.97438 * 24 23 22
46 46 H 1.08996 * 109.53610 * 186.67231 * 25 12 11
47 47 H 1.09002 * 109.68003 * 66.36699 * 25 12 11
48 48 H 1.09002 * 109.49557 * 298.56984 * 26 9 7
49 49 H 1.08996 * 109.50003 * 58.66881 * 26 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4467 2.6527 0.7000
6 1 3.5467 1.4402 0.7001
7 6 2.0045 -1.1940 0.0005
8 1 1.4645 -2.1293 0.0005
9 6 3.5116 -1.1940 0.0000
10 6 4.0214 -2.6370 0.0014
11 6 5.5529 -2.6331 0.0355
12 7 6.0516 -1.8210 -1.0828
13 6 6.9448 -2.3284 -1.9552
14 8 7.3449 -3.4655 -1.8211
15 6 7.4473 -1.4827 -3.0968
16 6 8.4440 -2.2908 -3.9301
17 6 8.9536 -1.4322 -5.0895
18 6 9.9498 -2.2406 -5.9231
19 6 10.4523 -1.3948 -7.0647
20 6 9.7894 -1.4068 -8.2778
21 6 10.2475 -0.6273 -9.3234
22 6 11.3745 0.1563 -9.1593
23 6 12.0403 0.1643 -7.9479
24 6 11.5795 -0.6115 -6.9008
25 6 5.5522 -0.4441 -1.2301
26 6 4.0207 -0.4719 -1.2496
27 1 -0.4850 0.8401 -0.0004
28 1 3.8750 -0.6800 0.8898
29 1 3.6788 -3.1447 -0.9003
30 1 3.6393 -3.1575 0.8795
31 1 5.8964 -2.2072 0.9782
32 1 5.9231 -3.6538 -0.0606
33 1 6.6077 -1.1830 -3.7239
34 1 7.9405 -0.5947 -2.7014
35 1 9.2835 -2.5902 -3.3028
36 1 7.9510 -3.1789 -4.3255
37 1 8.1139 -1.1332 -5.7167
38 1 9.4465 -0.5439 -4.6945
39 1 10.7897 -2.5399 -5.2962
40 1 9.4566 -3.1287 -6.3183
41 1 8.9118 -2.0226 -8.4074
42 1 9.7275 -0.6338 -10.2700
43 1 11.7349 0.7620 -9.9777
44 1 12.9210 0.7762 -7.8198
45 1 12.0999 -0.6056 -5.9545
46 1 5.9220 -0.0202 -2.1637
47 1 5.8956 0.1625 -0.3921
48 1 3.6781 -0.9997 -2.1397
49 1 3.6380 0.5486 -1.2614
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000897355838.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:23:23
Heat of formation + Delta-G solvation = -37.792502 kcal
Electronic energy + Delta-G solvation = -25372.052348 eV
Core-core repulsion = 21876.638395 eV
Total energy + Delta-G solvation = -3495.413953 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-39.92714 -39.56173 -37.22362 -35.70376 -33.56360 -32.66352 -31.50947 -31.17536
-30.66629 -28.93376 -26.57565 -24.96408 -22.86040 -22.85260 -22.64560 -21.61513
-21.00151 -19.84100 -18.40055 -17.04578 -16.98659 -16.62369 -16.15234 -15.58507
-15.42694 -15.37833 -14.74347 -14.42700 -13.84818 -13.73768 -13.68464 -13.55433
-13.36974 -13.07564 -12.99144 -12.62223 -12.41849 -12.34631 -12.10024 -12.05375
-11.82328 -11.56059 -11.27300 -11.17615 -11.05144 -10.98971 -10.74752 -10.68481
-10.21406 -10.17862 -9.78568 -9.51920 -9.32764 -9.21452 -9.11197 -8.95421
-8.59924 -8.19778 -6.12288 -4.11707 1.06780 1.10779 2.86540 3.17949
3.27157 3.29215 3.35117 3.49789 4.33946 4.40338 4.53265 4.67954
4.72442 4.79181 4.82049 4.84393 5.09695 5.13504 5.20445 5.25323
5.30166 5.31788 5.39750 5.55289 5.58058 5.60396 5.61543 5.67708
5.76516 5.77403 5.82246 5.86072 5.89794 5.98428 6.09532 6.17226
6.17981 6.22445 6.25106 6.28499 6.37978 6.60457 6.62047 6.72303
6.74075 6.88613 7.15726 7.45045 7.69017 7.74429 8.42566 8.47346
8.92175 9.49449 11.01093
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.017751 B = 0.002300 C = 0.002135
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1577.041484 B =12169.821454 C =13113.228277
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.900 5.900
2 C 0.067 3.933
3 Si 0.886 3.114
4 H -0.278 1.278
5 H -0.297 1.297
6 H -0.265 1.265
7 C -0.513 4.513
8 H 0.073 0.927
9 C 0.014 3.986
10 C -0.113 4.113
11 C 0.108 3.892
12 N -0.604 5.604
13 C 0.512 3.488
14 O -0.555 6.555
15 C -0.141 4.141
16 C -0.102 4.102
17 C -0.113 4.113
18 C -0.082 4.082
19 C -0.078 4.078
20 C -0.118 4.118
21 C -0.119 4.119
22 C -0.129 4.129
23 C -0.119 4.119
24 C -0.119 4.119
25 C 0.102 3.898
26 C -0.136 4.136
27 H 0.264 0.736
28 H 0.028 0.972
29 H 0.058 0.942
30 H 0.068 0.932
31 H 0.060 0.940
32 H 0.082 0.918
33 H 0.093 0.907
34 H 0.090 0.910
35 H 0.069 0.931
36 H 0.070 0.930
37 H 0.064 0.936
38 H 0.063 0.937
39 H 0.073 0.927
40 H 0.074 0.926
41 H 0.122 0.878
42 H 0.120 0.880
43 H 0.119 0.881
44 H 0.120 0.880
45 H 0.121 0.879
46 H 0.075 0.925
47 H 0.064 0.936
48 H 0.065 0.935
49 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.734 0.898 -14.247 26.845
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.538 5.538
2 C -0.134 4.134
3 Si 0.717 3.283
4 H -0.205 1.205
5 H -0.225 1.225
6 H -0.190 1.190
7 C -0.551 4.551
8 H 0.092 0.908
9 C -0.005 4.005
10 C -0.151 4.151
11 C -0.015 4.015
12 N -0.336 5.336
13 C 0.301 3.699
14 O -0.434 6.434
15 C -0.181 4.181
16 C -0.140 4.140
17 C -0.151 4.151
18 C -0.120 4.120
19 C -0.078 4.078
20 C -0.136 4.136
21 C -0.137 4.137
22 C -0.147 4.147
23 C -0.137 4.137
24 C -0.137 4.137
25 C -0.021 4.021
26 C -0.174 4.174
27 H 0.074 0.926
28 H 0.046 0.954
29 H 0.077 0.923
30 H 0.086 0.914
31 H 0.079 0.921
32 H 0.101 0.899
33 H 0.111 0.889
34 H 0.108 0.892
35 H 0.088 0.912
36 H 0.089 0.911
37 H 0.083 0.917
38 H 0.082 0.918
39 H 0.091 0.909
40 H 0.092 0.908
41 H 0.140 0.860
42 H 0.138 0.862
43 H 0.137 0.863
44 H 0.138 0.862
45 H 0.139 0.861
46 H 0.093 0.907
47 H 0.082 0.918
48 H 0.084 0.916
49 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 22.770 0.408 -14.155 26.815
hybrid contribution 0.158 1.234 -0.087 1.247
sum 22.928 1.642 -14.242 27.041
Atomic orbital electron populations
1.69902 1.06299 1.26935 1.50708 1.25058 0.94721 0.99077 0.94559
0.86861 0.80008 0.83654 0.77806 1.20533 1.22463 1.18984 1.21050
0.88732 0.94497 1.50814 0.90847 1.19130 0.96821 0.91736 0.92763
1.21819 0.91853 0.99501 1.01924 1.21749 0.95970 0.95854 0.87880
1.48243 1.42330 1.14759 1.28303 1.20629 0.78717 0.87516 0.83074
1.90646 1.58766 1.19192 1.74824 1.21706 1.00694 0.99466 0.96209
1.21344 0.98555 0.98228 0.95904 1.21591 0.98515 0.98461 0.96512
1.20643 0.99355 0.97421 0.94560 1.19986 0.95180 0.97470 0.95148
1.21107 0.99953 0.99663 0.92907 1.21166 0.96739 0.96833 0.98939
1.21146 0.96225 0.99720 0.97602 1.21152 0.99930 0.99212 0.93451
1.21082 0.96589 0.97030 0.99001 1.21966 0.96912 0.81862 1.01332
1.22376 0.91533 1.01128 1.02345 0.92649 0.95409 0.92340 0.91363
0.92144 0.89910 0.88887 0.89203 0.91246 0.91120 0.91677 0.91801
0.90852 0.90771 0.86026 0.86157 0.86297 0.86210 0.86115 0.90713
0.91772 0.91608 0.92373
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16
2 C 0.07 1.88 5.45 -17.82 -0.10 1.79 16
3 Si 0.89 20.88 24.38 -169.99 -4.14 16.73 16
4 H -0.28 -6.29 6.86 56.52 0.39 -5.90 16
5 H -0.30 -7.13 7.11 56.52 0.40 -6.72 16
6 H -0.26 -5.85 6.53 56.52 0.37 -5.48 16
7 C -0.51 -13.92 9.14 -34.44 -0.31 -14.24 16
8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16
9 C 0.01 0.32 1.66 -91.73 -0.15 0.17 16
10 C -0.11 -2.19 5.30 -26.61 -0.14 -2.33 16
11 C 0.11 1.83 6.42 -3.71 -0.02 1.81 16
12 N -0.60 -9.89 2.98 -172.54 -0.52 -10.41 16
13 C 0.51 8.08 7.70 -10.99 -0.08 8.00 16
14 O -0.56 -10.38 15.39 5.55 0.09 -10.29 16
15 C -0.14 -1.62 4.05 -27.88 -0.11 -1.74 16
16 C -0.10 -1.07 4.50 -26.73 -0.12 -1.20 16
17 C -0.11 -0.96 5.20 -26.73 -0.14 -1.10 16
18 C -0.08 -0.66 5.35 -27.88 -0.15 -0.81 16
19 C -0.08 -0.67 5.13 -104.62 -0.54 -1.21 16
20 C -0.12 -1.00 9.70 -39.58 -0.38 -1.38 16
21 C -0.12 -0.94 10.05 -39.58 -0.40 -1.33 16
22 C -0.13 -0.98 10.05 -39.58 -0.40 -1.38 16
23 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16
24 C -0.12 -0.98 9.70 -39.59 -0.38 -1.37 16
25 C 0.10 1.60 6.35 -3.56 -0.02 1.58 16
26 C -0.14 -2.68 4.85 -26.61 -0.13 -2.81 16
27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
28 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16
29 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16
30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16
31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
32 H 0.08 1.42 7.00 -51.93 -0.36 1.06 16
33 H 0.09 1.00 7.70 -51.93 -0.40 0.60 16
34 H 0.09 0.88 7.96 -51.93 -0.41 0.47 16
35 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16
36 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16
37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16
39 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16
40 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16
41 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16
42 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16
43 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16
44 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16
45 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16
46 H 0.07 0.95 5.97 -51.93 -0.31 0.64 16
47 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16
48 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16
49 H 0.06 1.21 3.24 -51.93 -0.17 1.04 16
LS Contribution 382.87 15.07 5.77 5.77
Total: -1.00 -31.53 382.87 -10.40 -41.93
By element:
Atomic # 1 Polarization: 9.79 SS G_CDS: -8.38 Total: 1.40 kcal
Atomic # 6 Polarization: -14.90 SS G_CDS: -3.98 Total: -18.89 kcal
Atomic # 7 Polarization: -36.91 SS G_CDS: 0.26 Total: -36.66 kcal
Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal
Atomic # 14 Polarization: 20.88 SS G_CDS: -4.14 Total: 16.73 kcal
Total LS contribution 5.77 Total: 5.77 kcal
Total: -31.53 -10.40 -41.93 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000897355838.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.141 kcal
(2) G-P(sol) polarization free energy of solvation -31.534 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.393 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.933 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.793 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds