Wall clock time and date at job start Tue Mar 31 2020 11:23:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86804 * 120.00087 * 2 1
4 4 H 1.48501 * 109.47126 * 269.99987 * 3 2 1
5 5 H 1.48500 * 109.47187 * 29.99757 * 3 2 1
6 6 H 1.48499 * 109.47129 * 149.99754 * 3 2 1
7 7 C 1.37872 * 119.99852 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00220 * 0.02562 * 7 2 1
9 9 C 1.50709 * 119.99864 * 179.97438 * 7 2 1
10 10 C 1.53035 * 109.45964 * 179.97438 * 9 7 2
11 11 C 1.53191 * 109.31327 * 181.37529 * 10 9 7
12 12 N 1.46926 * 108.89109 * 305.29292 * 11 10 9
13 13 C 1.34773 * 120.63302 * 233.67613 * 12 11 10
14 14 O 1.21283 * 119.99890 * 359.97438 * 13 12 11
15 15 C 1.50700 * 120.00452 * 180.02562 * 13 12 11
16 16 C 1.52997 * 109.47382 * 179.97438 * 15 13 12
17 17 C 1.53001 * 109.46922 * 179.97438 * 16 15 13
18 18 C 1.52997 * 109.46922 * 180.02562 * 17 16 15
19 19 C 1.50700 * 109.47382 * 180.02562 * 18 17 16
20 20 C 1.38244 * 119.99683 * 269.73024 * 19 18 17
21 21 C 1.38231 * 119.99781 * 179.76453 * 20 19 18
22 22 C 1.38239 * 119.99918 * 0.50315 * 21 20 19
23 23 C 1.38237 * 120.00111 * 359.74554 * 22 21 20
24 24 C 1.38229 * 119.99815 * 0.02562 * 23 22 21
25 25 C 1.47207 * 118.55531 * 53.54119 * 12 11 10
26 26 C 1.53038 * 109.44867 * 300.06441 * 9 7 2
27 27 H 0.97003 * 119.99843 * 0.02562 * 1 2 3
28 28 H 1.09004 * 109.45450 * 60.03070 * 9 7 2
29 29 H 1.09003 * 109.49576 * 61.42198 * 10 9 7
30 30 H 1.09000 * 109.52700 * 301.34246 * 10 9 7
31 31 H 1.09002 * 109.58786 * 65.15336 * 11 10 9
32 32 H 1.08996 * 109.58870 * 185.43616 * 11 10 9
33 33 H 1.08998 * 109.46962 * 300.00024 * 15 13 12
34 34 H 1.09003 * 109.46750 * 59.99342 * 15 13 12
35 35 H 1.08998 * 109.47350 * 300.00103 * 16 15 13
36 36 H 1.09004 * 109.46747 * 60.00319 * 16 15 13
37 37 H 1.08998 * 109.47498 * 300.00388 * 17 16 15
38 38 H 1.08996 * 109.47166 * 60.00703 * 17 16 15
39 39 H 1.09001 * 109.47635 * 300.00034 * 18 17 16
40 40 H 1.09003 * 109.47457 * 60.00467 * 18 17 16
41 41 H 1.07995 * 119.99841 * 359.97438 * 20 19 18
42 42 H 1.07998 * 120.00374 * 180.23265 * 21 20 19
43 43 H 1.08002 * 119.99931 * 179.73109 * 22 21 20
44 44 H 1.07995 * 119.99957 * 179.97438 * 23 22 21
45 45 H 1.08001 * 119.99770 * 179.97438 * 24 23 22
46 46 H 1.08996 * 109.53610 * 186.67231 * 25 12 11
47 47 H 1.09002 * 109.68003 * 66.36699 * 25 12 11
48 48 H 1.09002 * 109.49557 * 298.56984 * 26 9 7
49 49 H 1.08996 * 109.50003 * 58.66881 * 26 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4467 2.6527 0.7000
6 1 3.5467 1.4402 0.7001
7 6 2.0045 -1.1940 0.0005
8 1 1.4645 -2.1293 0.0005
9 6 3.5116 -1.1940 0.0000
10 6 4.0214 -2.6370 0.0014
11 6 5.5529 -2.6331 0.0355
12 7 6.0516 -1.8210 -1.0828
13 6 6.9448 -2.3284 -1.9552
14 8 7.3449 -3.4655 -1.8211
15 6 7.4473 -1.4827 -3.0968
16 6 8.4440 -2.2908 -3.9301
17 6 8.9536 -1.4322 -5.0895
18 6 9.9498 -2.2406 -5.9231
19 6 10.4523 -1.3948 -7.0647
20 6 9.7894 -1.4068 -8.2778
21 6 10.2475 -0.6273 -9.3234
22 6 11.3745 0.1563 -9.1593
23 6 12.0403 0.1643 -7.9479
24 6 11.5795 -0.6115 -6.9008
25 6 5.5522 -0.4441 -1.2301
26 6 4.0207 -0.4719 -1.2496
27 1 -0.4850 0.8401 -0.0004
28 1 3.8750 -0.6800 0.8898
29 1 3.6788 -3.1447 -0.9003
30 1 3.6393 -3.1575 0.8795
31 1 5.8964 -2.2072 0.9782
32 1 5.9231 -3.6538 -0.0606
33 1 6.6077 -1.1830 -3.7239
34 1 7.9405 -0.5947 -2.7014
35 1 9.2835 -2.5902 -3.3028
36 1 7.9510 -3.1789 -4.3255
37 1 8.1139 -1.1332 -5.7167
38 1 9.4465 -0.5439 -4.6945
39 1 10.7897 -2.5399 -5.2962
40 1 9.4566 -3.1287 -6.3183
41 1 8.9118 -2.0226 -8.4074
42 1 9.7275 -0.6338 -10.2700
43 1 11.7349 0.7620 -9.9777
44 1 12.9210 0.7762 -7.8198
45 1 12.0999 -0.6056 -5.9545
46 1 5.9220 -0.0202 -2.1637
47 1 5.8956 0.1625 -0.3921
48 1 3.6781 -0.9997 -2.1397
49 1 3.6380 0.5486 -1.2614
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000897355838.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:23:22
Heat of formation + Delta-G solvation = -53.914443 kcal
Electronic energy + Delta-G solvation = -25372.751447 eV
Core-core repulsion = 21876.638395 eV
Total energy + Delta-G solvation = -3496.113053 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-41.18004 -40.14419 -38.65379 -36.47662 -35.30332 -33.68158 -33.12365 -32.03590
-31.72256 -29.76777 -28.19604 -25.94738 -24.25287 -24.13418 -23.41295 -22.52001
-21.62375 -21.29900 -19.72539 -18.86962 -18.05370 -17.59070 -17.02107 -16.79191
-16.54939 -16.20774 -15.99116 -15.46909 -15.15699 -15.03388 -14.80218 -14.35751
-14.32866 -14.27932 -14.15985 -13.91200 -13.70045 -13.54418 -13.41303 -13.03787
-12.79081 -12.65672 -12.30991 -12.21743 -12.09475 -12.05624 -11.80605 -11.78528
-11.60363 -11.49518 -11.39940 -11.18195 -11.02043 -10.72955 -10.61886 -9.78143
-9.57070 -9.53723 -8.27532 -6.32964 0.49570 0.54030 1.32654 1.40562
1.51151 1.66867 2.08420 2.35745 2.91929 3.07381 3.52985 3.85514
3.95666 3.96576 4.07999 4.11878 4.14462 4.21475 4.23614 4.28471
4.33680 4.42479 4.45546 4.51451 4.59321 4.67038 4.70665 4.71905
4.74777 4.78477 4.86136 4.93576 4.94957 4.96340 5.05283 5.14135
5.15210 5.20879 5.25611 5.36349 5.39535 5.49969 5.59636 5.62708
5.67194 5.67829 5.75180 5.79512 6.17926 6.31835 6.50083 6.74126
7.20612 7.32566 8.89598
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.017751 B = 0.002300 C = 0.002135
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1577.041484 B =12169.821454 C =13113.228277
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.955 5.955
2 C 0.003 3.997
3 Si 0.954 3.046
4 H -0.257 1.257
5 H -0.305 1.305
6 H -0.234 1.234
7 C -0.522 4.522
8 H 0.024 0.976
9 C 0.014 3.986
10 C -0.106 4.106
11 C 0.115 3.885
12 N -0.609 5.609
13 C 0.508 3.492
14 O -0.590 6.590
15 C -0.136 4.136
16 C -0.096 4.096
17 C -0.103 4.103
18 C -0.080 4.080
19 C -0.089 4.089
20 C -0.134 4.134
21 C -0.129 4.129
22 C -0.138 4.138
23 C -0.128 4.128
24 C -0.131 4.131
25 C 0.108 3.892
26 C -0.134 4.134
27 H 0.265 0.735
28 H 0.033 0.967
29 H 0.039 0.961
30 H 0.063 0.937
31 H 0.078 0.922
32 H 0.078 0.922
33 H 0.107 0.893
34 H 0.119 0.881
35 H 0.061 0.939
36 H 0.053 0.947
37 H 0.066 0.934
38 H 0.073 0.927
39 H 0.076 0.924
40 H 0.071 0.929
41 H 0.127 0.873
42 H 0.135 0.865
43 H 0.137 0.863
44 H 0.137 0.863
45 H 0.132 0.868
46 H 0.114 0.886
47 H 0.083 0.917
48 H 0.053 0.947
49 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 25.958 3.289 -15.186 30.253
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.595 5.595
2 C -0.193 4.193
3 Si 0.780 3.220
4 H -0.183 1.183
5 H -0.233 1.233
6 H -0.157 1.157
7 C -0.560 4.560
8 H 0.042 0.958
9 C -0.005 4.005
10 C -0.145 4.145
11 C -0.008 4.008
12 N -0.341 5.341
13 C 0.298 3.702
14 O -0.471 6.471
15 C -0.175 4.175
16 C -0.135 4.135
17 C -0.140 4.140
18 C -0.117 4.117
19 C -0.089 4.089
20 C -0.152 4.152
21 C -0.147 4.147
22 C -0.155 4.155
23 C -0.146 4.146
24 C -0.148 4.148
25 C -0.014 4.014
26 C -0.172 4.172
27 H 0.073 0.927
28 H 0.051 0.949
29 H 0.058 0.942
30 H 0.081 0.919
31 H 0.096 0.904
32 H 0.097 0.903
33 H 0.125 0.875
34 H 0.137 0.863
35 H 0.080 0.920
36 H 0.072 0.928
37 H 0.084 0.916
38 H 0.091 0.909
39 H 0.094 0.906
40 H 0.090 0.910
41 H 0.145 0.855
42 H 0.153 0.847
43 H 0.155 0.845
44 H 0.155 0.845
45 H 0.149 0.851
46 H 0.132 0.868
47 H 0.101 0.899
48 H 0.072 0.928
49 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 26.021 2.785 -15.106 30.216
hybrid contribution -0.931 0.341 0.202 1.012
sum 25.090 3.127 -14.903 29.350
Atomic orbital electron populations
1.70085 1.08593 1.28083 1.52768 1.26056 0.95530 1.03640 0.94072
0.85769 0.79483 0.77644 0.79140 1.18306 1.23316 1.15725 1.21384
0.91744 0.92714 1.50156 0.95783 1.19097 0.93294 0.93730 0.94409
1.21696 0.94132 0.97804 1.00850 1.21576 0.93492 0.96358 0.89325
1.48348 1.42517 1.15086 1.28182 1.21410 0.77956 0.87432 0.83380
1.90635 1.59903 1.20961 1.75618 1.21792 1.01415 0.99630 0.94701
1.21274 0.97964 0.97933 0.96286 1.21490 0.98591 0.98288 0.95670
1.20606 0.99364 0.97256 0.94504 1.20092 0.95628 0.97879 0.95343
1.21304 1.00436 1.00164 0.93252 1.21434 0.97072 0.96732 0.99481
1.21452 0.96092 0.99754 0.98242 1.21447 1.00507 0.99241 0.93366
1.21307 0.96650 0.97117 0.99772 1.22020 0.93416 0.81667 1.04324
1.22228 0.94987 1.00010 1.00017 0.92664 0.94944 0.94217 0.91877
0.90372 0.90311 0.87487 0.86342 0.91997 0.92797 0.91555 0.90871
0.90562 0.91049 0.85523 0.84747 0.84530 0.84468 0.85053 0.86779
0.89922 0.92809 0.92747
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16
2 C 0.00 0.18 5.45 84.65 0.46 0.65 16
3 Si 0.95 42.03 24.38 68.60 1.67 43.70 16
4 H -0.26 -10.44 6.86 99.48 0.68 -9.76 16
5 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16
6 H -0.23 -9.08 6.53 99.48 0.65 -8.43 16
7 C -0.52 -29.22 9.14 25.60 0.23 -28.99 16
8 H 0.02 1.52 7.99 -2.91 -0.02 1.50 16
9 C 0.01 0.59 1.66 -11.51 -0.02 0.57 16
10 C -0.11 -4.15 5.30 30.67 0.16 -3.99 16
11 C 0.12 3.74 6.42 86.36 0.55 4.29 16
12 N -0.61 -18.15 2.98 -818.20 -2.44 -20.59 16
13 C 0.51 14.70 7.70 87.66 0.68 15.38 16
14 O -0.59 -21.33 15.39 -3.04 -0.05 -21.38 16
15 C -0.14 -2.63 4.05 29.85 0.12 -2.50 16
16 C -0.10 -1.81 4.50 30.59 0.14 -1.67 16
17 C -0.10 -1.48 5.20 30.59 0.16 -1.33 16
18 C -0.08 -1.16 5.35 29.85 0.16 -1.00 16
19 C -0.09 -1.41 5.13 -19.86 -0.10 -1.51 16
20 C -0.13 -2.09 9.70 22.27 0.22 -1.88 16
21 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16
22 C -0.14 -1.83 10.05 22.27 0.22 -1.60 16
23 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16
24 C -0.13 -1.91 9.70 22.27 0.22 -1.69 16
25 C 0.11 2.88 6.35 86.31 0.55 3.43 16
26 C -0.13 -4.95 4.85 30.67 0.15 -4.80 16
27 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16
28 H 0.03 1.39 7.20 -2.39 -0.02 1.38 16
29 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16
30 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16
31 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16
32 H 0.08 2.64 7.00 -2.39 -0.02 2.62 16
33 H 0.11 1.84 7.70 -2.39 -0.02 1.82 16
34 H 0.12 1.68 7.96 -2.39 -0.02 1.66 16
35 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16
36 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16
37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16
38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16
39 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16
40 H 0.07 1.05 8.08 -2.39 -0.02 1.03 16
41 H 0.13 1.73 8.06 -2.91 -0.02 1.70 16
42 H 0.13 1.40 8.06 -2.91 -0.02 1.38 16
43 H 0.14 1.23 8.06 -2.91 -0.02 1.20 16
44 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16
45 H 0.13 1.53 8.06 -2.91 -0.02 1.51 16
46 H 0.11 2.21 5.97 -2.39 -0.01 2.20 16
47 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16
48 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16
49 H 0.05 2.06 3.24 -2.39 -0.01 2.05 16
Total: -1.00 -71.43 382.87 4.65 -66.78
By element:
Atomic # 1 Polarization: 19.49 SS G_CDS: 0.82 Total: 20.31 kcal
Atomic # 6 Polarization: -34.10 SS G_CDS: 4.34 Total: -29.76 kcal
Atomic # 7 Polarization: -77.52 SS G_CDS: -2.14 Total: -79.66 kcal
Atomic # 8 Polarization: -21.33 SS G_CDS: -0.05 Total: -21.38 kcal
Atomic # 14 Polarization: 42.03 SS G_CDS: 1.67 Total: 43.70 kcal
Total: -71.43 4.65 -66.78 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000897355838.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.870 kcal
(2) G-P(sol) polarization free energy of solvation -71.432 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.562 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.648 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.784 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.914 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds