Wall clock time and date at job start Tue Mar 31 2020 11:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99905 * 2 1 4 4 H 1.48496 * 109.47162 * 240.00029 * 3 2 1 5 5 H 1.48499 * 109.47439 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47051 * 119.99833 * 3 2 1 7 7 C 1.37878 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99817 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.52608 * 299.92138 * 9 7 2 11 11 C 1.53046 * 109.49623 * 59.99951 * 9 7 2 12 12 C 1.53046 * 109.53579 * 181.31259 * 11 9 7 13 13 C 1.53187 * 109.31363 * 298.63645 * 12 11 9 14 14 N 1.46928 * 108.77625 * 54.63376 * 13 12 11 15 15 C 1.34775 * 120.62932 * 126.41524 * 14 13 12 16 16 O 1.21288 * 120.00275 * 179.97438 * 15 14 13 17 17 C 1.50700 * 120.00217 * 359.97291 * 15 14 13 18 18 C 1.53001 * 109.47497 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47351 * 180.02562 * 18 17 15 20 20 C 1.53001 * 109.46821 * 179.97438 * 19 18 17 21 21 C 1.50704 * 109.46659 * 180.02562 * 20 19 18 22 22 C 1.38235 * 119.99664 * 269.72475 * 21 20 19 23 23 C 1.38238 * 119.99943 * 179.78995 * 22 21 20 24 24 C 1.38242 * 119.99759 * 0.44097 * 23 22 21 25 25 C 1.38233 * 119.99778 * 359.81242 * 24 23 22 26 26 C 1.38233 * 120.00212 * 90.00263 * 21 20 19 27 27 C 1.46921 * 118.73936 * 306.39044 * 14 13 12 28 28 H 0.97001 * 119.99878 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.45866 * 301.33434 * 11 9 7 30 30 H 1.09000 * 109.45949 * 61.29770 * 11 9 7 31 31 H 1.09001 * 109.49519 * 58.58791 * 12 11 9 32 32 H 1.08996 * 109.49601 * 178.68448 * 12 11 9 33 33 H 1.09000 * 109.59097 * 294.84726 * 13 12 11 34 34 H 1.09002 * 109.70548 * 174.49212 * 13 12 11 35 35 H 1.09001 * 109.47154 * 300.00670 * 17 15 14 36 36 H 1.09003 * 109.46788 * 60.00417 * 17 15 14 37 37 H 1.09003 * 109.46707 * 300.00593 * 18 17 15 38 38 H 1.08995 * 109.47297 * 59.99926 * 18 17 15 39 39 H 1.08996 * 109.46786 * 299.99582 * 19 18 17 40 40 H 1.08997 * 109.47032 * 60.00288 * 19 18 17 41 41 H 1.08996 * 109.47107 * 299.99395 * 20 19 18 42 42 H 1.09003 * 109.47353 * 59.99997 * 20 19 18 43 43 H 1.08004 * 120.00309 * 0.02562 * 22 21 20 44 44 H 1.07994 * 120.00042 * 180.27356 * 23 22 21 45 45 H 1.07992 * 119.99722 * 179.83222 * 24 23 22 46 46 H 1.08001 * 119.99880 * 179.97438 * 25 24 23 47 47 H 1.08000 * 119.99968 * 359.97389 * 26 21 20 48 48 H 1.08996 * 109.58905 * 293.82203 * 27 14 13 49 49 H 1.09008 * 109.58585 * 173.39403 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6247 -2.5590 0.8884 11 6 0.3714 -2.5799 -1.2515 12 6 -0.4190 -3.8904 -1.2372 13 6 0.5570 -5.0710 -1.2557 14 7 1.4998 -4.9227 -0.1386 15 6 1.6772 -5.9225 0.7476 16 8 2.4588 -5.7880 1.6653 17 6 0.9043 -7.2076 0.5984 18 6 1.2886 -8.1678 1.7259 19 6 0.5044 -9.4728 1.5740 20 6 0.8892 -10.4331 2.7012 21 6 0.1173 -11.7187 2.5512 22 6 -1.1115 -11.8629 3.1678 23 6 -1.8216 -13.0405 3.0266 24 6 -1.2988 -14.0773 2.2764 25 6 -0.0676 -13.9349 1.6642 26 6 0.6406 -12.7557 1.8018 27 6 2.2459 -3.6640 -0.0063 28 1 -0.4850 0.8401 0.0004 29 1 -0.3211 -1.7383 -1.2632 30 1 1.0003 -2.5449 -2.1411 31 1 -1.0295 -3.9372 -0.3354 32 1 -1.0626 -3.9367 -2.1156 33 1 1.1050 -5.0774 -2.1979 34 1 0.0060 -6.0052 -1.1472 35 1 -0.1640 -6.9971 0.6490 36 1 1.1396 -7.6634 -0.3634 37 1 2.3569 -8.3782 1.6756 38 1 1.0531 -7.7118 2.6875 39 1 -0.5639 -9.2625 1.6242 40 1 0.7404 -9.9286 0.6125 41 1 1.9575 -10.6432 2.6506 42 1 0.6536 -9.9774 3.6630 43 1 -1.5185 -11.0542 3.7566 44 1 -2.7836 -13.1516 3.5047 45 1 -1.8523 -14.9982 2.1684 46 1 0.3411 -14.7449 1.0784 47 1 1.6024 -12.6445 1.3235 48 1 2.9316 -3.5555 -0.8466 49 1 2.8075 -3.6685 0.9280 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898580987.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:30 Heat of formation + Delta-G solvation = -60.051078 kcal Electronic energy + Delta-G solvation = -25256.368392 eV Core-core repulsion = 21759.989235 eV Total energy + Delta-G solvation = -3496.379157 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.10094 -40.13247 -38.46823 -36.45644 -35.36623 -33.45288 -32.92539 -31.94774 -31.71001 -29.72263 -27.14827 -26.47552 -25.04055 -23.39953 -23.34457 -22.53282 -21.61494 -21.27011 -19.66615 -18.52395 -17.80118 -17.57628 -16.99890 -16.73187 -16.49662 -16.13418 -15.97353 -15.32720 -15.08536 -14.97297 -14.65041 -14.37114 -14.27828 -14.21794 -13.92122 -13.89622 -13.58792 -13.34997 -13.11849 -12.86742 -12.73713 -12.68102 -12.54795 -12.23397 -12.11515 -11.87491 -11.83392 -11.78677 -11.60356 -11.58584 -11.39581 -11.26327 -10.86974 -10.64099 -10.42679 -9.76865 -9.52689 -9.46104 -8.11490 -6.26896 0.50758 0.55252 1.40363 1.41963 1.49388 1.71898 2.17518 2.43412 2.93231 3.14582 3.59343 3.86541 3.96640 4.01471 4.13520 4.15241 4.23190 4.27252 4.33962 4.37723 4.42978 4.53373 4.55505 4.60869 4.68343 4.72043 4.73279 4.76637 4.86347 4.88125 4.94317 4.96694 5.01197 5.13063 5.15403 5.21985 5.25777 5.30551 5.36867 5.48268 5.51154 5.59138 5.60584 5.63933 5.68294 5.80856 5.92657 6.13510 6.19033 6.34027 6.62313 6.82493 7.28345 7.41078 8.91844 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.032300 B = 0.001955 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.653263 B =14319.453762 C =14512.164160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 0.956 3.044 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.540 4.540 8 H 0.051 0.949 9 C 0.041 3.959 10 H -0.016 1.016 11 C -0.106 4.106 12 C -0.128 4.128 13 C 0.110 3.890 14 N -0.611 5.611 15 C 0.497 3.503 16 O -0.600 6.600 17 C -0.128 4.128 18 C -0.099 4.099 19 C -0.100 4.100 20 C -0.081 4.081 21 C -0.089 4.089 22 C -0.133 4.133 23 C -0.128 4.128 24 C -0.137 4.137 25 C -0.127 4.127 26 C -0.131 4.131 27 C 0.129 3.871 28 H 0.262 0.738 29 H 0.062 0.938 30 H 0.036 0.964 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.121 0.879 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.126 0.874 44 H 0.135 0.865 45 H 0.138 0.862 46 H 0.138 0.862 47 H 0.130 0.870 48 H 0.059 0.941 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.599 -27.156 -1.237 27.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.183 4.183 3 Si 0.781 3.219 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.202 1.202 7 C -0.578 4.578 8 H 0.069 0.931 9 C 0.022 3.978 10 H 0.002 0.998 11 C -0.145 4.145 12 C -0.166 4.166 13 C -0.012 4.012 14 N -0.343 5.343 15 C 0.288 3.712 16 O -0.482 6.482 17 C -0.168 4.168 18 C -0.137 4.137 19 C -0.137 4.137 20 C -0.119 4.119 21 C -0.089 4.089 22 C -0.151 4.151 23 C -0.146 4.146 24 C -0.155 4.155 25 C -0.145 4.145 26 C -0.149 4.149 27 C 0.006 3.994 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.140 0.860 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.144 0.856 44 H 0.153 0.847 45 H 0.156 0.844 46 H 0.156 0.844 47 H 0.148 0.852 48 H 0.077 0.923 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.351 -26.963 -0.782 27.323 hybrid contribution 0.494 1.589 0.377 1.706 sum -3.858 -25.374 -0.405 25.668 Atomic orbital electron populations 1.70001 1.07062 1.27281 1.50807 1.25704 0.95740 1.02301 0.94572 0.85653 0.78440 0.79008 0.78802 1.19254 1.20684 1.20216 1.21421 0.93045 0.91998 1.51368 0.93057 1.18869 0.93163 0.91658 0.94101 0.99767 1.21428 0.98763 0.97245 0.97022 1.21915 0.97866 0.94971 1.01867 1.21998 0.90625 0.99820 0.88757 1.48441 1.42411 1.14863 1.28547 1.21659 0.82553 0.86450 0.80540 1.90632 1.40220 1.82880 1.34494 1.21754 1.01175 0.90977 1.02855 1.21290 1.00393 0.94635 0.97364 1.21473 1.00146 0.93274 0.98842 1.20613 0.99560 0.92150 0.99558 1.20063 0.95400 0.95963 0.97447 1.21298 0.94948 0.98436 1.00442 1.21432 1.00499 0.93560 0.99115 1.21452 0.96399 0.99676 0.97937 1.21442 0.95278 0.97980 0.99794 1.21299 1.00730 0.93502 0.99329 1.21514 0.94551 0.83236 1.00128 0.92911 0.91988 0.94493 0.93715 0.89166 0.90115 0.86437 0.87113 0.86047 0.92392 0.93171 0.91232 0.90644 0.90769 0.91208 0.85563 0.84664 0.84442 0.84446 0.85165 0.92265 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.65 11.31 21.45 0.24 -52.41 16 2 C 0.02 0.89 5.30 84.65 0.45 1.34 16 3 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 7 C -0.54 -30.39 8.56 25.60 0.22 -30.18 16 8 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 9 C 0.04 2.12 2.25 -11.46 -0.03 2.09 16 10 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 11 C -0.11 -4.80 4.96 30.63 0.15 -4.65 16 12 C -0.13 -4.26 6.08 30.67 0.19 -4.07 16 13 C 0.11 2.97 6.34 86.36 0.55 3.52 16 14 N -0.61 -22.02 2.97 -818.91 -2.43 -24.45 16 15 C 0.50 17.32 7.70 87.66 0.67 17.99 16 16 O -0.60 -26.47 15.40 -3.06 -0.05 -26.52 16 17 C -0.13 -2.81 4.05 29.85 0.12 -2.69 16 18 C -0.10 -2.14 4.50 30.60 0.14 -2.00 16 19 C -0.10 -1.57 5.20 30.60 0.16 -1.41 16 20 C -0.08 -1.31 5.35 29.85 0.16 -1.15 16 21 C -0.09 -1.46 5.13 -19.86 -0.10 -1.56 16 22 C -0.13 -2.14 9.70 22.27 0.22 -1.92 16 23 C -0.13 -1.82 10.05 22.27 0.22 -1.60 16 24 C -0.14 -1.81 10.05 22.27 0.22 -1.59 16 25 C -0.13 -1.73 10.05 22.27 0.22 -1.50 16 26 C -0.13 -1.98 9.70 22.27 0.22 -1.77 16 27 C 0.13 5.78 5.66 86.36 0.49 6.27 16 28 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.06 3.22 6.04 -2.39 -0.01 3.20 16 30 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16 34 H 0.12 2.16 5.93 -2.39 -0.01 2.15 16 35 H 0.11 2.04 7.70 -2.39 -0.02 2.02 16 36 H 0.12 1.92 7.94 -2.39 -0.02 1.90 16 37 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 38 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 42 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 43 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 44 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 45 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 46 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 47 H 0.13 1.63 8.06 -2.91 -0.02 1.60 16 48 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 49 H 0.05 2.48 7.01 -2.38 -0.02 2.47 16 Total: -1.00 -70.78 389.62 4.95 -65.83 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.90 Total: 16.35 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: 4.27 Total: -24.87 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -2.19 Total: -76.86 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.05 Total: -26.52 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -70.78 4.95 -65.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898580987.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.777 kcal (2) G-P(sol) polarization free energy of solvation -70.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds