Wall clock time and date at job start Tue Mar 31 2020 12:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86799 * 120.00285 * 2 1 4 4 H 1.48496 * 109.47339 * 240.00297 * 3 2 1 5 5 H 1.48501 * 109.46943 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47123 * 119.99989 * 3 2 1 7 7 C 1.39946 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99712 * 162.56258 * 7 2 1 9 9 C 1.41430 * 120.00192 * 342.56268 * 7 2 1 10 10 C 1.40783 * 120.17791 * 154.97379 * 9 7 2 11 11 C 1.37716 * 120.04141 * 179.97438 * 10 9 7 12 12 C 1.38370 * 120.41074 * 0.02648 * 11 10 9 13 13 C 1.39885 * 120.35804 * 359.97334 * 12 11 10 14 14 C 1.47882 * 120.02276 * 179.97438 * 13 12 11 15 15 O 1.21553 * 119.99923 * 180.02562 * 14 13 12 16 16 N 1.34771 * 120.00581 * 0.02562 * 14 13 12 17 17 C 1.46498 * 120.00510 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47327 * 179.97438 * 17 16 14 19 19 C 1.53013 * 109.47670 * 295.00777 * 18 17 16 20 20 C 1.52984 * 109.46436 * 164.04603 * 19 18 17 21 21 C 1.52981 * 109.50951 * 315.98405 * 20 19 18 22 22 C 1.53015 * 109.47030 * 112.93521 * 21 20 19 23 23 C 1.53000 * 109.43314 * 284.04781 * 22 21 20 24 24 C 1.52982 * 109.48686 * 75.95795 * 23 22 21 25 25 C 1.53000 * 109.50842 * 247.06555 * 24 23 22 26 26 C 1.39030 * 119.95095 * 0.02562 * 13 12 11 27 27 H 0.96995 * 119.99877 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.98424 * 0.02562 * 10 9 7 29 29 H 1.07995 * 119.79426 * 180.02562 * 11 10 9 30 30 H 1.07998 * 119.81975 * 179.70362 * 12 11 10 31 31 H 0.97005 * 120.00136 * 0.02562 * 16 14 13 32 32 H 1.08998 * 109.47262 * 300.00367 * 17 16 14 33 33 H 1.09009 * 109.46803 * 60.00604 * 17 16 14 34 34 H 1.09003 * 109.47141 * 55.00580 * 18 17 16 35 35 H 1.09005 * 109.47035 * 284.04226 * 19 18 17 36 36 H 1.08997 * 109.47209 * 44.04168 * 19 18 17 37 37 H 1.09006 * 109.46658 * 195.97705 * 20 19 18 38 38 H 1.09005 * 109.46042 * 75.99298 * 20 19 18 39 39 H 1.08998 * 109.47171 * 352.94089 * 21 20 19 40 40 H 1.08995 * 109.47306 * 232.93490 * 21 20 19 41 41 H 1.09002 * 109.47629 * 164.05796 * 22 21 20 42 42 H 1.09001 * 109.47031 * 44.03379 * 22 21 20 43 43 H 1.09004 * 109.46662 * 315.95511 * 23 22 21 44 44 H 1.08993 * 109.46455 * 195.96481 * 23 22 21 45 45 H 1.09000 * 109.46645 * 127.05489 * 24 23 22 46 46 H 1.08996 * 109.46104 * 7.07473 * 24 23 22 47 47 H 1.08997 * 109.47194 * 284.01978 * 25 24 23 48 48 H 1.08995 * 109.47600 * 164.00554 * 25 24 23 49 49 H 1.08000 * 120.20248 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6963 1.2124 7 6 2.0079 -1.2120 -0.0005 8 1 3.0507 -1.2333 -0.2808 9 6 1.3495 -2.4088 0.3659 10 6 1.8196 -3.6486 -0.1074 11 6 1.1766 -4.8123 0.2517 12 6 0.0669 -4.7734 1.0773 13 6 -0.4146 -3.5509 1.5573 14 6 -1.6015 -3.5178 2.4387 15 8 -2.0198 -2.4552 2.8553 16 7 -2.2196 -4.6657 2.7803 17 6 -3.3951 -4.6330 3.6539 18 6 -3.9002 -6.0589 3.8829 19 6 -4.3962 -6.6433 2.5586 20 6 -4.5248 -8.1622 2.6881 21 6 -3.2946 -8.7198 3.4065 22 6 -3.7084 -9.2736 4.7715 23 6 -3.9480 -8.1137 5.7401 24 6 -5.2902 -7.4521 5.4221 25 6 -5.0495 -6.0369 4.8929 26 6 0.2230 -2.3669 1.2043 27 1 -0.4850 0.8400 0.0004 28 1 2.6853 -3.6872 -0.7518 29 1 1.5408 -5.7612 -0.1134 30 1 -0.4329 -5.6914 1.3489 31 1 -1.8856 -5.5138 2.4482 32 1 -3.1249 -4.1849 4.6101 33 1 -4.1805 -4.0408 3.1841 34 1 -3.0881 -6.6743 4.2701 35 1 -5.3686 -6.2158 2.3143 36 1 -3.6854 -6.4049 1.7675 37 1 -4.5981 -8.6065 1.6954 38 1 -5.4203 -8.4033 3.2610 39 1 -2.5625 -7.9241 3.5441 40 1 -2.8554 -9.5182 2.8085 41 1 -2.9159 -9.9135 5.1596 42 1 -4.6251 -9.8538 4.6655 43 1 -3.1478 -7.3811 5.6346 44 1 -3.9622 -8.4913 6.7625 45 1 -5.8947 -7.4033 6.3277 46 1 -5.8139 -8.0381 4.6669 47 1 -4.7920 -5.3778 5.7220 48 1 -5.9540 -5.6722 4.4062 49 1 -0.1450 -1.4208 1.5729 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917819489.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:54 Heat of formation + Delta-G solvation = -39.257522 kcal Electronic energy + Delta-G solvation = -26425.850589 eV Core-core repulsion = 22930.373108 eV Total energy + Delta-G solvation = -3495.477481 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.04143 -38.85357 -36.98058 -34.93466 -33.73508 -33.05598 -32.50749 -30.22410 -29.42419 -28.01728 -26.10445 -25.32845 -24.12325 -22.13763 -21.93542 -20.94127 -20.85925 -19.52783 -19.12768 -17.73550 -16.44014 -15.87407 -15.56066 -15.32315 -14.94844 -14.57446 -14.40263 -14.33034 -14.28185 -13.70943 -13.43503 -13.29387 -13.06012 -13.03689 -12.60622 -12.47712 -12.40545 -11.83129 -11.62690 -11.52729 -11.25670 -11.14390 -11.10876 -11.06271 -10.95748 -10.82531 -10.72278 -10.53188 -10.48920 -10.06196 -9.99997 -9.84481 -9.68107 -9.20006 -8.97618 -8.58281 -7.61044 -7.50464 -6.78509 -4.40388 2.23810 2.83479 3.08281 3.10051 3.17575 3.75083 3.89958 3.93803 4.37758 4.55796 4.64546 4.66119 4.86219 4.87360 4.91311 5.02101 5.04652 5.09492 5.38916 5.47681 5.57591 5.60583 5.63911 5.67510 5.73896 5.78230 5.82576 5.83491 5.91958 5.96108 5.97375 6.02219 6.07951 6.13194 6.17570 6.22025 6.28622 6.37058 6.42732 6.73162 6.92548 7.00504 7.04084 7.22642 7.39588 7.71680 7.77938 7.94091 8.12902 8.21490 8.51987 8.81501 8.84940 9.00289 10.16297 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.023613 B = 0.002810 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.510617 B = 9962.914244 C =10698.743298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.461 4.461 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.212 4.212 11 C -0.098 4.098 12 C -0.218 4.218 13 C -0.128 4.128 14 C 0.562 3.438 15 O -0.548 6.548 16 N -0.735 5.735 17 C 0.125 3.875 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.126 4.126 21 C -0.130 4.130 22 C -0.118 4.118 23 C -0.130 4.130 24 C -0.126 4.126 25 C -0.110 4.110 26 C -0.092 4.092 27 H 0.285 0.715 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.397 0.603 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.064 0.936 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.290 -14.957 7.878 19.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.099 0.901 9 C 0.097 3.903 10 C -0.232 4.232 11 C -0.116 4.116 12 C -0.238 4.238 13 C -0.131 4.131 14 C 0.353 3.647 15 O -0.426 6.426 16 N -0.390 5.390 17 C 0.001 3.999 18 C -0.136 4.136 19 C -0.154 4.154 20 C -0.163 4.163 21 C -0.167 4.167 22 C -0.156 4.156 23 C -0.167 4.167 24 C -0.163 4.163 25 C -0.148 4.148 26 C -0.113 4.113 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.233 0.767 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.828 -14.011 8.168 18.964 hybrid contribution 0.417 0.305 -0.282 0.589 sum -9.411 -13.705 7.886 18.401 Atomic orbital electron populations 1.69780 1.07564 1.29861 1.33585 1.25964 0.94775 1.01523 0.92332 0.86323 0.80103 0.80124 0.79959 1.18974 1.20232 1.18731 1.19554 0.98046 0.91022 1.40375 0.90130 1.17594 0.91198 0.92446 0.89097 1.21100 1.03520 0.92820 1.05748 1.20428 0.96097 0.96700 0.98397 1.20331 1.01344 0.94639 1.07471 1.19492 0.96605 0.95291 1.01702 1.18843 0.83268 0.82887 0.79738 1.90693 1.66448 1.30168 1.55274 1.45970 1.31115 1.09645 1.52227 1.21300 0.88003 0.96199 0.94417 1.21958 0.99335 0.95993 0.96320 1.21707 1.01634 0.95143 0.96959 1.21851 0.98587 0.95617 1.00291 1.21842 0.98322 1.00640 0.95939 1.21701 1.01091 0.97375 0.95396 1.21839 0.98227 0.97970 0.98689 1.21840 0.97343 0.96327 1.00769 1.21584 0.97996 0.96961 0.98297 1.21630 0.96468 0.96420 0.96738 0.90394 0.88646 0.88948 0.89332 0.76683 0.92060 0.92084 0.88288 0.91859 0.91570 0.92378 0.91066 0.90829 0.92326 0.92387 0.92050 0.90746 0.92524 0.92449 0.90916 0.91818 0.91765 0.84907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.97 10.97 55.55 0.61 -20.36 16 2 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 3 Si 0.91 18.93 29.59 -169.99 -5.03 13.90 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 7 C -0.46 -12.20 9.05 -37.73 -0.34 -12.54 16 8 H 0.08 2.02 7.90 -52.49 -0.41 1.60 16 9 C 0.10 2.64 5.57 -106.87 -0.59 2.05 16 10 C -0.21 -5.06 9.78 -38.81 -0.38 -5.44 16 11 C -0.10 -2.10 10.01 -39.72 -0.40 -2.49 16 12 C -0.22 -4.59 9.55 -38.92 -0.37 -4.96 16 13 C -0.13 -3.04 5.87 -105.04 -0.62 -3.66 16 14 C 0.56 12.47 7.77 -12.32 -0.10 12.38 16 15 O -0.55 -14.01 16.33 5.32 0.09 -13.92 16 16 N -0.74 -12.20 5.06 -61.24 -0.31 -12.51 16 17 C 0.12 1.75 5.03 -4.04 -0.02 1.73 16 18 C -0.12 -1.19 1.63 -90.61 -0.15 -1.34 16 19 C -0.12 -1.15 5.00 -26.73 -0.13 -1.28 16 20 C -0.13 -1.05 5.48 -26.75 -0.15 -1.20 16 21 C -0.13 -1.06 5.47 -26.73 -0.15 -1.21 16 22 C -0.12 -0.87 5.59 -26.72 -0.15 -1.02 16 23 C -0.13 -1.00 5.47 -26.74 -0.15 -1.15 16 24 C -0.13 -0.95 5.48 -26.74 -0.15 -1.10 16 25 C -0.11 -0.97 5.07 -26.72 -0.14 -1.10 16 26 C -0.09 -2.49 8.23 -38.44 -0.32 -2.81 16 27 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 28 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 29 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.09 1.54 6.38 -52.49 -0.33 1.21 16 31 H 0.40 5.75 5.75 -40.82 -0.23 5.52 16 32 H 0.06 0.90 8.06 -51.93 -0.42 0.48 16 33 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 34 H 0.10 0.98 2.83 -51.93 -0.15 0.83 16 35 H 0.06 0.62 7.82 -51.93 -0.41 0.22 16 36 H 0.07 0.74 6.94 -51.93 -0.36 0.38 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.55 4.69 -51.93 -0.24 0.30 16 39 H 0.07 0.66 5.47 -51.93 -0.28 0.38 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.43 7.47 -51.93 -0.39 0.04 16 43 H 0.07 0.64 5.47 -51.93 -0.28 0.36 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.53 4.69 -51.93 -0.24 0.29 16 47 H 0.06 0.57 7.98 -51.93 -0.41 0.16 16 48 H 0.06 0.56 7.82 -51.93 -0.41 0.15 16 49 H 0.13 3.88 5.77 -52.49 -0.30 3.58 16 LS Contribution 366.78 15.07 5.53 5.53 Total: -1.00 -29.41 366.78 -10.89 -40.30 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -7.40 Total: 10.43 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -4.37 Total: -23.37 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.30 Total: -32.87 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.09 Total: -13.92 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.41 -10.89 -40.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917819489.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.041 kcal (2) G-P(sol) polarization free energy of solvation -29.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds