Wall clock time and date at job start Tue Mar 31 2020 12:23:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30824 * 1
3 3 Si 1.86799 * 120.00285 * 2 1
4 4 H 1.48496 * 109.47339 * 240.00297 * 3 2 1
5 5 H 1.48501 * 109.46943 * 0.02562 * 3 2 1
6 6 H 1.48493 * 109.47123 * 119.99989 * 3 2 1
7 7 C 1.39946 * 119.99853 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99712 * 162.56258 * 7 2 1
9 9 C 1.41430 * 120.00192 * 342.56268 * 7 2 1
10 10 C 1.40783 * 120.17791 * 154.97379 * 9 7 2
11 11 C 1.37716 * 120.04141 * 179.97438 * 10 9 7
12 12 C 1.38370 * 120.41074 * 0.02648 * 11 10 9
13 13 C 1.39885 * 120.35804 * 359.97334 * 12 11 10
14 14 C 1.47882 * 120.02276 * 179.97438 * 13 12 11
15 15 O 1.21553 * 119.99923 * 180.02562 * 14 13 12
16 16 N 1.34771 * 120.00581 * 0.02562 * 14 13 12
17 17 C 1.46498 * 120.00510 * 179.97438 * 16 14 13
18 18 C 1.52996 * 109.47327 * 179.97438 * 17 16 14
19 19 C 1.53013 * 109.47670 * 295.00777 * 18 17 16
20 20 C 1.52984 * 109.46436 * 164.04603 * 19 18 17
21 21 C 1.52981 * 109.50951 * 315.98405 * 20 19 18
22 22 C 1.53015 * 109.47030 * 112.93521 * 21 20 19
23 23 C 1.53000 * 109.43314 * 284.04781 * 22 21 20
24 24 C 1.52982 * 109.48686 * 75.95795 * 23 22 21
25 25 C 1.53000 * 109.50842 * 247.06555 * 24 23 22
26 26 C 1.39030 * 119.95095 * 0.02562 * 13 12 11
27 27 H 0.96995 * 119.99877 * 359.97438 * 1 2 3
28 28 H 1.07996 * 119.98424 * 0.02562 * 10 9 7
29 29 H 1.07995 * 119.79426 * 180.02562 * 11 10 9
30 30 H 1.07998 * 119.81975 * 179.70362 * 12 11 10
31 31 H 0.97005 * 120.00136 * 0.02562 * 16 14 13
32 32 H 1.08998 * 109.47262 * 300.00367 * 17 16 14
33 33 H 1.09009 * 109.46803 * 60.00604 * 17 16 14
34 34 H 1.09003 * 109.47141 * 55.00580 * 18 17 16
35 35 H 1.09005 * 109.47035 * 284.04226 * 19 18 17
36 36 H 1.08997 * 109.47209 * 44.04168 * 19 18 17
37 37 H 1.09006 * 109.46658 * 195.97705 * 20 19 18
38 38 H 1.09005 * 109.46042 * 75.99298 * 20 19 18
39 39 H 1.08998 * 109.47171 * 352.94089 * 21 20 19
40 40 H 1.08995 * 109.47306 * 232.93490 * 21 20 19
41 41 H 1.09002 * 109.47629 * 164.05796 * 22 21 20
42 42 H 1.09001 * 109.47031 * 44.03379 * 22 21 20
43 43 H 1.09004 * 109.46662 * 315.95511 * 23 22 21
44 44 H 1.08993 * 109.46455 * 195.96481 * 23 22 21
45 45 H 1.09000 * 109.46645 * 127.05489 * 24 23 22
46 46 H 1.08996 * 109.46104 * 7.07473 * 24 23 22
47 47 H 1.08997 * 109.47194 * 284.01978 * 25 24 23
48 48 H 1.08995 * 109.47600 * 164.00554 * 25 24 23
49 49 H 1.08000 * 120.20248 * 180.02562 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3082 0.0000 0.0000
3 14 2.2423 1.6177 0.0000
4 1 3.0960 1.6964 -1.2125
5 1 1.2773 2.7464 0.0006
6 1 3.0960 1.6963 1.2124
7 6 2.0079 -1.2120 -0.0005
8 1 3.0507 -1.2333 -0.2808
9 6 1.3495 -2.4088 0.3659
10 6 1.8196 -3.6486 -0.1074
11 6 1.1766 -4.8123 0.2517
12 6 0.0669 -4.7734 1.0773
13 6 -0.4146 -3.5509 1.5573
14 6 -1.6015 -3.5178 2.4387
15 8 -2.0198 -2.4552 2.8553
16 7 -2.2196 -4.6657 2.7803
17 6 -3.3951 -4.6330 3.6539
18 6 -3.9002 -6.0589 3.8829
19 6 -4.3962 -6.6433 2.5586
20 6 -4.5248 -8.1622 2.6881
21 6 -3.2946 -8.7198 3.4065
22 6 -3.7084 -9.2736 4.7715
23 6 -3.9480 -8.1137 5.7401
24 6 -5.2902 -7.4521 5.4221
25 6 -5.0495 -6.0369 4.8929
26 6 0.2230 -2.3669 1.2043
27 1 -0.4850 0.8400 0.0004
28 1 2.6853 -3.6872 -0.7518
29 1 1.5408 -5.7612 -0.1134
30 1 -0.4329 -5.6914 1.3489
31 1 -1.8856 -5.5138 2.4482
32 1 -3.1249 -4.1849 4.6101
33 1 -4.1805 -4.0408 3.1841
34 1 -3.0881 -6.6743 4.2701
35 1 -5.3686 -6.2158 2.3143
36 1 -3.6854 -6.4049 1.7675
37 1 -4.5981 -8.6065 1.6954
38 1 -5.4203 -8.4033 3.2610
39 1 -2.5625 -7.9241 3.5441
40 1 -2.8554 -9.5182 2.8085
41 1 -2.9159 -9.9135 5.1596
42 1 -4.6251 -9.8538 4.6655
43 1 -3.1478 -7.3811 5.6346
44 1 -3.9622 -8.4913 6.7625
45 1 -5.8947 -7.4033 6.3277
46 1 -5.8139 -8.0381 4.6669
47 1 -4.7920 -5.3778 5.7220
48 1 -5.9540 -5.6722 4.4062
49 1 -0.1450 -1.4208 1.5729
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000917819489.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:23:54
Heat of formation + Delta-G solvation = -39.257522 kcal
Electronic energy + Delta-G solvation = -26425.850589 eV
Core-core repulsion = 22930.373108 eV
Total energy + Delta-G solvation = -3495.477481 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-40.04143 -38.85357 -36.98058 -34.93466 -33.73508 -33.05598 -32.50749 -30.22410
-29.42419 -28.01728 -26.10445 -25.32845 -24.12325 -22.13763 -21.93542 -20.94127
-20.85925 -19.52783 -19.12768 -17.73550 -16.44014 -15.87407 -15.56066 -15.32315
-14.94844 -14.57446 -14.40263 -14.33034 -14.28185 -13.70943 -13.43503 -13.29387
-13.06012 -13.03689 -12.60622 -12.47712 -12.40545 -11.83129 -11.62690 -11.52729
-11.25670 -11.14390 -11.10876 -11.06271 -10.95748 -10.82531 -10.72278 -10.53188
-10.48920 -10.06196 -9.99997 -9.84481 -9.68107 -9.20006 -8.97618 -8.58281
-7.61044 -7.50464 -6.78509 -4.40388 2.23810 2.83479 3.08281 3.10051
3.17575 3.75083 3.89958 3.93803 4.37758 4.55796 4.64546 4.66119
4.86219 4.87360 4.91311 5.02101 5.04652 5.09492 5.38916 5.47681
5.57591 5.60583 5.63911 5.67510 5.73896 5.78230 5.82576 5.83491
5.91958 5.96108 5.97375 6.02219 6.07951 6.13194 6.17570 6.22025
6.28622 6.37058 6.42732 6.73162 6.92548 7.00504 7.04084 7.22642
7.39588 7.71680 7.77938 7.94091 8.12902 8.21490 8.51987 8.81501
8.84940 9.00289 10.16297
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.023613 B = 0.002810 C = 0.002617
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1185.510617 B = 9962.914244 C =10698.743298
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.784 5.784
2 C 0.073 3.927
3 Si 0.911 3.089
4 H -0.265 1.265
5 H -0.277 1.277
6 H -0.263 1.263
7 C -0.461 4.461
8 H 0.081 0.919
9 C 0.099 3.901
10 C -0.212 4.212
11 C -0.098 4.098
12 C -0.218 4.218
13 C -0.128 4.128
14 C 0.562 3.438
15 O -0.548 6.548
16 N -0.735 5.735
17 C 0.125 3.875
18 C -0.118 4.118
19 C -0.117 4.117
20 C -0.126 4.126
21 C -0.130 4.130
22 C -0.118 4.118
23 C -0.130 4.130
24 C -0.126 4.126
25 C -0.110 4.110
26 C -0.092 4.092
27 H 0.285 0.715
28 H 0.095 0.905
29 H 0.092 0.908
30 H 0.089 0.911
31 H 0.397 0.603
32 H 0.061 0.939
33 H 0.061 0.939
34 H 0.100 0.900
35 H 0.063 0.937
36 H 0.066 0.934
37 H 0.057 0.943
38 H 0.071 0.929
39 H 0.073 0.927
40 H 0.058 0.942
41 H 0.057 0.943
42 H 0.061 0.939
43 H 0.074 0.926
44 H 0.056 0.944
45 H 0.057 0.943
46 H 0.073 0.927
47 H 0.063 0.937
48 H 0.064 0.936
49 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.290 -14.957 7.878 19.289
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.408 5.408
2 C -0.146 4.146
3 Si 0.735 3.265
4 H -0.190 1.190
5 H -0.202 1.202
6 H -0.187 1.187
7 C -0.490 4.490
8 H 0.099 0.901
9 C 0.097 3.903
10 C -0.232 4.232
11 C -0.116 4.116
12 C -0.238 4.238
13 C -0.131 4.131
14 C 0.353 3.647
15 O -0.426 6.426
16 N -0.390 5.390
17 C 0.001 3.999
18 C -0.136 4.136
19 C -0.154 4.154
20 C -0.163 4.163
21 C -0.167 4.167
22 C -0.156 4.156
23 C -0.167 4.167
24 C -0.163 4.163
25 C -0.148 4.148
26 C -0.113 4.113
27 H 0.096 0.904
28 H 0.114 0.886
29 H 0.111 0.889
30 H 0.107 0.893
31 H 0.233 0.767
32 H 0.079 0.921
33 H 0.079 0.921
34 H 0.117 0.883
35 H 0.081 0.919
36 H 0.084 0.916
37 H 0.076 0.924
38 H 0.089 0.911
39 H 0.092 0.908
40 H 0.077 0.923
41 H 0.076 0.924
42 H 0.079 0.921
43 H 0.093 0.907
44 H 0.075 0.925
45 H 0.076 0.924
46 H 0.091 0.909
47 H 0.082 0.918
48 H 0.082 0.918
49 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges -9.828 -14.011 8.168 18.964
hybrid contribution 0.417 0.305 -0.282 0.589
sum -9.411 -13.705 7.886 18.401
Atomic orbital electron populations
1.69780 1.07564 1.29861 1.33585 1.25964 0.94775 1.01523 0.92332
0.86323 0.80103 0.80124 0.79959 1.18974 1.20232 1.18731 1.19554
0.98046 0.91022 1.40375 0.90130 1.17594 0.91198 0.92446 0.89097
1.21100 1.03520 0.92820 1.05748 1.20428 0.96097 0.96700 0.98397
1.20331 1.01344 0.94639 1.07471 1.19492 0.96605 0.95291 1.01702
1.18843 0.83268 0.82887 0.79738 1.90693 1.66448 1.30168 1.55274
1.45970 1.31115 1.09645 1.52227 1.21300 0.88003 0.96199 0.94417
1.21958 0.99335 0.95993 0.96320 1.21707 1.01634 0.95143 0.96959
1.21851 0.98587 0.95617 1.00291 1.21842 0.98322 1.00640 0.95939
1.21701 1.01091 0.97375 0.95396 1.21839 0.98227 0.97970 0.98689
1.21840 0.97343 0.96327 1.00769 1.21584 0.97996 0.96961 0.98297
1.21630 0.96468 0.96420 0.96738 0.90394 0.88646 0.88948 0.89332
0.76683 0.92060 0.92084 0.88288 0.91859 0.91570 0.92378 0.91066
0.90829 0.92326 0.92387 0.92050 0.90746 0.92524 0.92449 0.90916
0.91818 0.91765 0.84907
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.78 -20.97 10.97 55.55 0.61 -20.36 16
2 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16
3 Si 0.91 18.93 29.59 -169.99 -5.03 13.90 16
4 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16
5 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16
6 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16
7 C -0.46 -12.20 9.05 -37.73 -0.34 -12.54 16
8 H 0.08 2.02 7.90 -52.49 -0.41 1.60 16
9 C 0.10 2.64 5.57 -106.87 -0.59 2.05 16
10 C -0.21 -5.06 9.78 -38.81 -0.38 -5.44 16
11 C -0.10 -2.10 10.01 -39.72 -0.40 -2.49 16
12 C -0.22 -4.59 9.55 -38.92 -0.37 -4.96 16
13 C -0.13 -3.04 5.87 -105.04 -0.62 -3.66 16
14 C 0.56 12.47 7.77 -12.32 -0.10 12.38 16
15 O -0.55 -14.01 16.33 5.32 0.09 -13.92 16
16 N -0.74 -12.20 5.06 -61.24 -0.31 -12.51 16
17 C 0.12 1.75 5.03 -4.04 -0.02 1.73 16
18 C -0.12 -1.19 1.63 -90.61 -0.15 -1.34 16
19 C -0.12 -1.15 5.00 -26.73 -0.13 -1.28 16
20 C -0.13 -1.05 5.48 -26.75 -0.15 -1.20 16
21 C -0.13 -1.06 5.47 -26.73 -0.15 -1.21 16
22 C -0.12 -0.87 5.59 -26.72 -0.15 -1.02 16
23 C -0.13 -1.00 5.47 -26.74 -0.15 -1.15 16
24 C -0.13 -0.95 5.48 -26.74 -0.15 -1.10 16
25 C -0.11 -0.97 5.07 -26.72 -0.14 -1.10 16
26 C -0.09 -2.49 8.23 -38.44 -0.32 -2.81 16
27 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16
28 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16
29 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16
30 H 0.09 1.54 6.38 -52.49 -0.33 1.21 16
31 H 0.40 5.75 5.75 -40.82 -0.23 5.52 16
32 H 0.06 0.90 8.06 -51.93 -0.42 0.48 16
33 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16
34 H 0.10 0.98 2.83 -51.93 -0.15 0.83 16
35 H 0.06 0.62 7.82 -51.93 -0.41 0.22 16
36 H 0.07 0.74 6.94 -51.93 -0.36 0.38 16
37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
38 H 0.07 0.55 4.69 -51.93 -0.24 0.30 16
39 H 0.07 0.66 5.47 -51.93 -0.28 0.38 16
40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
42 H 0.06 0.43 7.47 -51.93 -0.39 0.04 16
43 H 0.07 0.64 5.47 -51.93 -0.28 0.36 16
44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
45 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16
46 H 0.07 0.53 4.69 -51.93 -0.24 0.29 16
47 H 0.06 0.57 7.98 -51.93 -0.41 0.16 16
48 H 0.06 0.56 7.82 -51.93 -0.41 0.15 16
49 H 0.13 3.88 5.77 -52.49 -0.30 3.58 16
LS Contribution 366.78 15.07 5.53 5.53
Total: -1.00 -29.41 366.78 -10.89 -40.30
By element:
Atomic # 1 Polarization: 17.83 SS G_CDS: -7.40 Total: 10.43 kcal
Atomic # 6 Polarization: -19.00 SS G_CDS: -4.37 Total: -23.37 kcal
Atomic # 7 Polarization: -33.17 SS G_CDS: 0.30 Total: -32.87 kcal
Atomic # 8 Polarization: -14.01 SS G_CDS: 0.09 Total: -13.92 kcal
Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -29.41 -10.89 -40.30 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000917819489.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.041 kcal
(2) G-P(sol) polarization free energy of solvation -29.408 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.366 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.891 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.258 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds