Wall clock time and date at job start Tue Mar 31 2020 12:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86799 * 120.00285 * 2 1 4 4 H 1.48496 * 109.47339 * 240.00297 * 3 2 1 5 5 H 1.48501 * 109.46943 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47123 * 119.99989 * 3 2 1 7 7 C 1.39946 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99712 * 162.56258 * 7 2 1 9 9 C 1.41430 * 120.00192 * 342.56268 * 7 2 1 10 10 C 1.40783 * 120.17791 * 154.97379 * 9 7 2 11 11 C 1.37716 * 120.04141 * 179.97438 * 10 9 7 12 12 C 1.38370 * 120.41074 * 0.02648 * 11 10 9 13 13 C 1.39885 * 120.35804 * 359.97334 * 12 11 10 14 14 C 1.47882 * 120.02276 * 179.97438 * 13 12 11 15 15 O 1.21553 * 119.99923 * 180.02562 * 14 13 12 16 16 N 1.34771 * 120.00581 * 0.02562 * 14 13 12 17 17 C 1.46498 * 120.00510 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47327 * 179.97438 * 17 16 14 19 19 C 1.53013 * 109.47670 * 295.00777 * 18 17 16 20 20 C 1.52984 * 109.46436 * 164.04603 * 19 18 17 21 21 C 1.52981 * 109.50951 * 315.98405 * 20 19 18 22 22 C 1.53015 * 109.47030 * 112.93521 * 21 20 19 23 23 C 1.53000 * 109.43314 * 284.04781 * 22 21 20 24 24 C 1.52982 * 109.48686 * 75.95795 * 23 22 21 25 25 C 1.53000 * 109.50842 * 247.06555 * 24 23 22 26 26 C 1.39030 * 119.95095 * 0.02562 * 13 12 11 27 27 H 0.96995 * 119.99877 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.98424 * 0.02562 * 10 9 7 29 29 H 1.07995 * 119.79426 * 180.02562 * 11 10 9 30 30 H 1.07998 * 119.81975 * 179.70362 * 12 11 10 31 31 H 0.97005 * 120.00136 * 0.02562 * 16 14 13 32 32 H 1.08998 * 109.47262 * 300.00367 * 17 16 14 33 33 H 1.09009 * 109.46803 * 60.00604 * 17 16 14 34 34 H 1.09003 * 109.47141 * 55.00580 * 18 17 16 35 35 H 1.09005 * 109.47035 * 284.04226 * 19 18 17 36 36 H 1.08997 * 109.47209 * 44.04168 * 19 18 17 37 37 H 1.09006 * 109.46658 * 195.97705 * 20 19 18 38 38 H 1.09005 * 109.46042 * 75.99298 * 20 19 18 39 39 H 1.08998 * 109.47171 * 352.94089 * 21 20 19 40 40 H 1.08995 * 109.47306 * 232.93490 * 21 20 19 41 41 H 1.09002 * 109.47629 * 164.05796 * 22 21 20 42 42 H 1.09001 * 109.47031 * 44.03379 * 22 21 20 43 43 H 1.09004 * 109.46662 * 315.95511 * 23 22 21 44 44 H 1.08993 * 109.46455 * 195.96481 * 23 22 21 45 45 H 1.09000 * 109.46645 * 127.05489 * 24 23 22 46 46 H 1.08996 * 109.46104 * 7.07473 * 24 23 22 47 47 H 1.08997 * 109.47194 * 284.01978 * 25 24 23 48 48 H 1.08995 * 109.47600 * 164.00554 * 25 24 23 49 49 H 1.08000 * 120.20248 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6963 1.2124 7 6 2.0079 -1.2120 -0.0005 8 1 3.0507 -1.2333 -0.2808 9 6 1.3495 -2.4088 0.3659 10 6 1.8196 -3.6486 -0.1074 11 6 1.1766 -4.8123 0.2517 12 6 0.0669 -4.7734 1.0773 13 6 -0.4146 -3.5509 1.5573 14 6 -1.6015 -3.5178 2.4387 15 8 -2.0198 -2.4552 2.8553 16 7 -2.2196 -4.6657 2.7803 17 6 -3.3951 -4.6330 3.6539 18 6 -3.9002 -6.0589 3.8829 19 6 -4.3962 -6.6433 2.5586 20 6 -4.5248 -8.1622 2.6881 21 6 -3.2946 -8.7198 3.4065 22 6 -3.7084 -9.2736 4.7715 23 6 -3.9480 -8.1137 5.7401 24 6 -5.2902 -7.4521 5.4221 25 6 -5.0495 -6.0369 4.8929 26 6 0.2230 -2.3669 1.2043 27 1 -0.4850 0.8400 0.0004 28 1 2.6853 -3.6872 -0.7518 29 1 1.5408 -5.7612 -0.1134 30 1 -0.4329 -5.6914 1.3489 31 1 -1.8856 -5.5138 2.4482 32 1 -3.1249 -4.1849 4.6101 33 1 -4.1805 -4.0408 3.1841 34 1 -3.0881 -6.6743 4.2701 35 1 -5.3686 -6.2158 2.3143 36 1 -3.6854 -6.4049 1.7675 37 1 -4.5981 -8.6065 1.6954 38 1 -5.4203 -8.4033 3.2610 39 1 -2.5625 -7.9241 3.5441 40 1 -2.8554 -9.5182 2.8085 41 1 -2.9159 -9.9135 5.1596 42 1 -4.6251 -9.8538 4.6655 43 1 -3.1478 -7.3811 5.6346 44 1 -3.9622 -8.4913 6.7625 45 1 -5.8947 -7.4033 6.3277 46 1 -5.8139 -8.0381 4.6669 47 1 -4.7920 -5.3778 5.7220 48 1 -5.9540 -5.6722 4.4062 49 1 -0.1450 -1.4208 1.5729 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917819489.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:53 Heat of formation + Delta-G solvation = -54.046179 kcal Electronic energy + Delta-G solvation = -26426.491873 eV Core-core repulsion = 22930.373108 eV Total energy + Delta-G solvation = -3496.118765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.18399 -40.22476 -38.78112 -36.20686 -35.58290 -33.82477 -33.55496 -31.96521 -31.27938 -29.07005 -27.19800 -26.79161 -25.32628 -23.60619 -22.80910 -22.66100 -21.70449 -21.03869 -20.02940 -19.44880 -18.04570 -17.19709 -16.88919 -16.58891 -16.51703 -16.12766 -15.79329 -15.29506 -15.07860 -14.96278 -14.90668 -14.43270 -14.27565 -14.18640 -14.07133 -13.92987 -13.51157 -13.30900 -12.95207 -12.80991 -12.54250 -12.52568 -12.21883 -12.19138 -11.94109 -11.92105 -11.86084 -11.68301 -11.59573 -11.50670 -11.20933 -11.07315 -10.84213 -10.71639 -10.49403 -10.11327 -9.46846 -9.38610 -8.66728 -6.38836 0.37851 1.00989 1.35587 1.47507 1.50087 2.10005 2.19003 2.27971 2.78704 3.66705 3.69488 3.73755 3.90301 4.01514 4.15906 4.19406 4.25151 4.33695 4.36109 4.41753 4.43479 4.53596 4.58812 4.68685 4.75755 4.87732 4.91695 4.95301 5.05464 5.08250 5.09954 5.14974 5.15337 5.19124 5.20016 5.29545 5.30949 5.33278 5.42417 5.46932 5.50144 5.52259 5.57764 5.70361 5.71712 5.86316 5.92252 6.04858 6.28319 6.51123 6.68875 6.87379 6.94438 7.31554 8.29994 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.023613 B = 0.002810 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.510617 B = 9962.914244 C =10698.743298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.029 3.971 3 Si 0.983 3.017 4 H -0.251 1.251 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.499 4.499 8 H 0.085 0.915 9 C 0.068 3.932 10 C -0.217 4.217 11 C -0.095 4.095 12 C -0.197 4.197 13 C -0.139 4.139 14 C 0.557 3.443 15 O -0.592 6.592 16 N -0.709 5.709 17 C 0.123 3.877 18 C -0.105 4.105 19 C -0.116 4.116 20 C -0.121 4.121 21 C -0.131 4.131 22 C -0.116 4.116 23 C -0.131 4.131 24 C -0.121 4.121 25 C -0.109 4.109 26 C -0.132 4.132 27 H 0.286 0.714 28 H 0.109 0.891 29 H 0.140 0.860 30 H 0.135 0.865 31 H 0.411 0.589 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.108 0.892 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.059 0.941 48 H 0.065 0.935 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.416 -17.990 8.121 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.186 4.186 3 Si 0.803 3.197 4 H -0.175 1.175 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.528 4.528 8 H 0.103 0.897 9 C 0.065 3.935 10 C -0.236 4.236 11 C -0.113 4.113 12 C -0.217 4.217 13 C -0.142 4.142 14 C 0.347 3.653 15 O -0.474 6.474 16 N -0.362 5.362 17 C -0.001 4.001 18 C -0.123 4.123 19 C -0.154 4.154 20 C -0.158 4.158 21 C -0.168 4.168 22 C -0.153 4.153 23 C -0.168 4.168 24 C -0.158 4.158 25 C -0.147 4.147 26 C -0.152 4.152 27 H 0.097 0.903 28 H 0.127 0.873 29 H 0.157 0.843 30 H 0.153 0.847 31 H 0.249 0.751 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.958 -17.117 8.410 21.514 hybrid contribution 0.394 1.027 -0.322 1.146 sum -9.564 -16.090 8.088 20.391 Atomic orbital electron populations 1.69888 1.09275 1.30648 1.35371 1.26872 0.95413 1.05007 0.91329 0.85236 0.78693 0.75421 0.80307 1.17518 1.19712 1.18502 1.19848 0.98468 0.92163 1.42309 0.89719 1.17942 0.91757 0.93969 0.89796 1.21419 1.03934 0.92806 1.05474 1.20923 0.95327 0.97718 0.97302 1.20832 1.00588 0.95049 1.05193 1.19796 0.97007 0.95573 1.01866 1.18779 0.83234 0.83653 0.79623 1.90667 1.67609 1.32125 1.57001 1.45771 1.30835 1.08473 1.51140 1.21505 0.86492 0.98921 0.93160 1.21911 1.00119 0.93097 0.97173 1.21699 1.01167 0.96521 0.96022 1.21818 0.99168 0.94056 1.00769 1.21846 0.97972 1.00530 0.96468 1.21688 1.01617 0.97253 0.94755 1.21837 0.97800 0.97886 0.99259 1.21813 0.97532 0.95193 1.01255 1.21581 0.97336 0.98075 0.97757 1.21433 0.98364 0.96349 0.99070 0.90337 0.87279 0.84272 0.84747 0.75085 0.92796 0.93301 0.87413 0.91952 0.92874 0.92051 0.90108 0.91639 0.91866 0.92043 0.91244 0.91751 0.91922 0.91650 0.90257 0.92191 0.91583 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.92 10.97 21.83 0.24 -46.68 16 2 C 0.03 1.52 5.14 85.26 0.44 1.96 16 3 Si 0.98 40.17 29.59 68.60 2.03 42.20 16 4 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 7 C -0.50 -27.48 9.05 23.47 0.21 -27.27 16 8 H 0.08 4.38 7.90 -2.91 -0.02 4.36 16 9 C 0.07 3.72 5.57 -21.32 -0.12 3.60 16 10 C -0.22 -10.18 9.78 22.77 0.22 -9.96 16 11 C -0.09 -3.76 10.01 22.18 0.22 -3.54 16 12 C -0.20 -7.79 9.55 22.70 0.22 -7.57 16 13 C -0.14 -6.70 5.87 -20.13 -0.12 -6.82 16 14 C 0.56 25.17 7.77 86.80 0.67 25.84 16 15 O -0.59 -31.79 16.33 -3.88 -0.06 -31.86 16 16 N -0.71 -22.91 5.06 -465.94 -2.36 -25.26 16 17 C 0.12 3.38 5.03 86.38 0.43 3.81 16 18 C -0.11 -1.94 1.63 -10.79 -0.02 -1.96 16 19 C -0.12 -2.05 5.00 30.59 0.15 -1.89 16 20 C -0.12 -1.66 5.48 30.58 0.17 -1.49 16 21 C -0.13 -1.74 5.47 30.59 0.17 -1.57 16 22 C -0.12 -1.35 5.59 30.60 0.17 -1.18 16 23 C -0.13 -1.66 5.47 30.59 0.17 -1.49 16 24 C -0.12 -1.51 5.48 30.59 0.17 -1.34 16 25 C -0.11 -1.73 5.07 30.60 0.16 -1.58 16 26 C -0.13 -7.44 8.23 23.01 0.19 -7.25 16 27 H 0.29 15.03 8.30 -92.71 -0.77 14.26 16 28 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 29 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 30 H 0.13 4.03 6.38 -2.91 -0.02 4.01 16 31 H 0.41 10.86 5.75 -92.70 -0.53 10.33 16 32 H 0.05 1.59 8.06 -2.39 -0.02 1.57 16 33 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.11 1.88 2.83 -2.39 -0.01 1.87 16 35 H 0.06 1.12 7.82 -2.38 -0.02 1.10 16 36 H 0.05 1.07 6.94 -2.39 -0.02 1.06 16 37 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.08 0.97 4.69 -2.38 -0.01 0.96 16 39 H 0.07 0.98 5.47 -2.39 -0.01 0.96 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.07 0.72 7.47 -2.39 -0.02 0.71 16 43 H 0.06 0.96 5.47 -2.39 -0.01 0.94 16 44 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.08 0.90 4.69 -2.39 -0.01 0.89 16 47 H 0.06 1.01 7.98 -2.39 -0.02 0.99 16 48 H 0.07 1.03 7.82 -2.39 -0.02 1.01 16 49 H 0.10 6.13 5.77 -2.91 -0.02 6.11 16 Total: -1.00 -68.53 366.78 3.79 -64.74 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: 0.43 Total: 36.56 kcal Atomic # 6 Polarization: -43.21 SS G_CDS: 3.51 Total: -39.70 kcal Atomic # 7 Polarization: -69.82 SS G_CDS: -2.12 Total: -71.94 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -0.06 Total: -31.86 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -68.53 3.79 -64.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917819489.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.697 kcal (2) G-P(sol) polarization free energy of solvation -68.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds