Wall clock time and date at job start Tue Mar 31 2020 12:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00129 * 2 1 4 4 H 1.48503 * 109.47074 * 269.99989 * 3 2 1 5 5 H 1.48508 * 109.47289 * 29.99351 * 3 2 1 6 6 H 1.48497 * 109.47577 * 149.99734 * 3 2 1 7 7 C 1.37874 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00076 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00164 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.49881 * 59.92142 * 9 7 2 11 11 C 1.53117 * 109.50390 * 299.80316 * 9 7 2 12 12 C 1.53117 * 109.15996 * 182.40208 * 11 9 7 13 13 C 1.53038 * 109.27802 * 57.65584 * 12 11 9 14 14 N 1.46853 * 109.52199 * 300.82151 * 13 12 11 15 15 C 1.46902 * 110.99781 * 185.84045 * 14 13 12 16 16 C 1.53784 * 113.61539 * 55.78631 * 15 14 13 17 17 C 1.53782 * 87.08244 * 219.93508 * 16 15 14 18 18 O 1.42899 * 113.61338 * 139.98155 * 17 16 15 19 19 C 1.42903 * 113.99629 * 150.00210 * 18 17 16 20 20 C 1.50701 * 109.46878 * 179.97438 * 19 18 17 21 21 C 1.38233 * 120.00099 * 269.72733 * 20 19 18 22 22 C 1.38234 * 119.99645 * 179.78840 * 21 20 19 23 23 C 1.38230 * 120.00350 * 0.44086 * 22 21 20 24 24 C 1.38238 * 119.99911 * 359.81385 * 23 22 21 25 25 C 1.38234 * 120.00093 * 359.97438 * 24 23 22 26 26 C 1.53784 * 113.69046 * 318.25056 * 15 14 13 27 27 C 1.46837 * 111.19881 * 61.74163 * 14 13 12 28 28 H 0.96997 * 119.99545 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.52294 * 302.31075 * 11 9 7 30 30 H 1.09004 * 109.52242 * 62.43628 * 11 9 7 31 31 H 1.08999 * 109.50396 * 177.59482 * 12 11 9 32 32 H 1.09003 * 109.50282 * 297.71674 * 12 11 9 33 33 H 1.08997 * 109.46502 * 180.80216 * 13 12 11 34 34 H 1.09001 * 109.46131 * 60.83579 * 13 12 11 35 35 H 1.08999 * 112.85027 * 186.98608 * 15 14 13 36 36 H 1.09000 * 113.61253 * 105.38442 * 16 15 14 37 37 H 1.08997 * 113.69349 * 334.49692 * 16 15 14 38 38 H 1.09003 * 113.61337 * 270.80399 * 17 16 15 39 39 H 1.09002 * 109.47382 * 59.99956 * 19 18 17 40 40 H 1.09001 * 109.46938 * 299.99942 * 19 18 17 41 41 H 1.08003 * 119.99927 * 359.97438 * 21 20 19 42 42 H 1.08008 * 119.99783 * 180.27179 * 22 21 20 43 43 H 1.07996 * 120.00223 * 179.83235 * 23 22 21 44 44 H 1.08004 * 119.99911 * 180.02562 * 24 23 22 45 45 H 1.07995 * 119.99943 * 180.02562 * 25 24 23 46 46 H 1.08999 * 113.61243 * 25.44579 * 26 15 14 47 47 H 1.08998 * 113.61929 * 254.54402 * 26 15 14 48 48 H 1.08998 * 109.46466 * 58.27563 * 27 14 13 49 49 H 1.08998 * 109.46471 * 178.25263 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6234 -2.5570 -0.8889 11 6 0.3736 -2.5829 1.2526 12 6 -0.3420 -3.9364 1.2752 13 6 0.6979 -5.0585 1.2389 14 7 1.5111 -4.9348 0.0223 15 6 2.4282 -6.0740 -0.1160 16 6 1.7210 -7.4395 -0.1012 17 6 2.8941 -7.9497 0.7523 18 8 2.4953 -8.8267 1.8076 19 6 3.4804 -9.8011 2.1571 20 6 2.9568 -10.6664 3.2743 21 6 3.1850 -10.3094 4.5901 22 6 2.7008 -11.1010 5.6148 23 6 1.9965 -12.2542 5.3238 24 6 1.7728 -12.6139 4.0079 25 6 2.2531 -11.8201 2.9831 26 6 3.0958 -6.4936 1.2043 27 6 2.2448 -3.6630 0.0011 28 1 -0.4849 0.8401 -0.0004 29 1 0.9971 -2.4856 2.1414 30 1 -0.3637 -1.7803 1.2352 31 1 -0.9352 -4.0193 2.1859 32 1 -0.9951 -4.0172 0.4062 33 1 0.1912 -6.0235 1.2404 34 1 1.3420 -4.9853 2.1152 35 1 3.1300 -5.9546 -0.9414 36 1 1.6584 -7.9094 -1.0827 37 1 0.7674 -7.4332 0.4266 38 1 3.7227 -8.3444 0.1642 39 1 4.3899 -9.2971 2.4842 40 1 3.7012 -10.4221 1.2890 41 1 3.7389 -9.4106 4.8175 42 1 2.8753 -10.8197 6.6429 43 1 1.6206 -12.8739 6.1243 44 1 1.2221 -13.5147 3.7804 45 1 2.0780 -12.1010 1.9551 46 1 2.5182 -6.2273 2.0895 47 1 4.1430 -6.2000 1.2769 48 1 2.8816 -3.5963 0.8832 49 1 2.8614 -3.6143 -0.8964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930924843.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:10 Heat of formation + Delta-G solvation = 1.435320 kcal Electronic energy + Delta-G solvation = -25923.886786 eV Core-core repulsion = 22430.173879 eV Total energy + Delta-G solvation = -3493.712907 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.08698 -39.43391 -37.55943 -35.71026 -32.95496 -31.97881 -31.16657 -30.74987 -29.73673 -26.37771 -25.67137 -24.93942 -24.20622 -22.84623 -21.81744 -21.68357 -21.53541 -19.15634 -18.15532 -17.34935 -17.04404 -16.18311 -15.87440 -15.80462 -15.23601 -14.92704 -14.56846 -14.42853 -13.96655 -13.83975 -13.66286 -13.29985 -13.02705 -12.92449 -12.65729 -12.52552 -12.21701 -12.03485 -11.79303 -11.56106 -11.30067 -11.27388 -10.93554 -10.90834 -10.89756 -10.70492 -10.52572 -10.38676 -9.99603 -9.75620 -9.46815 -9.41448 -9.18120 -9.10386 -8.95654 -8.66249 -8.26814 -7.55074 -5.94410 -4.00452 1.00229 1.14059 3.32398 3.32456 3.39104 3.41963 3.88399 4.39970 4.50165 4.52909 4.65021 4.69054 4.74371 4.80002 4.83497 4.93765 5.01377 5.11706 5.12727 5.26972 5.35562 5.38885 5.44657 5.66691 5.69637 5.77050 5.82971 5.88215 5.94432 6.07481 6.10001 6.17311 6.23144 6.23217 6.29734 6.33650 6.43264 6.48823 6.57161 6.71251 6.79112 6.80842 7.01479 7.19328 7.27773 7.45085 7.73969 7.79239 7.87573 8.12831 8.21615 8.51885 9.03689 9.63578 11.11590 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.025916 B = 0.002280 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.171618 B =12279.554233 C =12464.744069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.054 3.946 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.118 4.118 13 C 0.059 3.941 14 N -0.524 5.524 15 C 0.069 3.931 16 C -0.129 4.129 17 C 0.063 3.937 18 O -0.366 6.366 19 C 0.101 3.899 20 C -0.088 4.088 21 C -0.099 4.099 22 C -0.124 4.124 23 C -0.117 4.117 24 C -0.125 4.125 25 C -0.099 4.099 26 C -0.194 4.194 27 C 0.069 3.931 28 H 0.259 0.741 29 H 0.029 0.971 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.028 0.972 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.096 0.904 47 H 0.064 0.936 48 H 0.019 0.981 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.547 -23.948 6.614 25.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.035 3.965 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.156 4.156 13 C -0.068 4.068 14 N -0.246 5.246 15 C -0.041 4.041 16 C -0.167 4.167 17 C 0.005 3.995 18 O -0.285 6.285 19 C 0.024 3.976 20 C -0.088 4.088 21 C -0.117 4.117 22 C -0.142 4.142 23 C -0.135 4.135 24 C -0.143 4.143 25 C -0.118 4.118 26 C -0.233 4.233 27 C -0.057 4.057 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.115 0.885 47 H 0.082 0.918 48 H 0.038 0.962 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.892 -23.788 6.293 25.088 hybrid contribution 1.320 0.905 0.664 1.733 sum 6.212 -22.884 6.957 24.711 Atomic orbital electron populations 1.69898 1.05818 1.26263 1.50721 1.24937 0.94830 0.98923 0.95207 0.86637 0.79835 0.83698 0.78040 1.20730 1.21297 1.20063 1.21151 0.92788 0.90707 1.50596 0.92901 1.18673 0.92654 0.90304 0.94834 0.94807 1.21646 1.00003 0.94746 0.98437 1.21687 0.97250 0.96501 1.00144 1.22136 0.95489 0.98803 0.90415 1.61960 1.23123 1.01918 1.37610 1.22885 0.94156 0.90834 0.96268 1.23405 0.98746 0.95280 0.99280 1.23621 0.98093 0.88873 0.88932 1.88052 1.40740 1.45456 1.54226 1.21333 0.91342 0.89833 0.95052 1.19662 0.99680 0.95419 0.94051 1.21106 0.99311 0.99146 0.92107 1.21166 0.98570 0.95209 0.99229 1.21197 0.98638 0.97015 0.96656 1.21152 1.00294 0.99957 0.92861 1.21079 0.96776 0.94420 0.99483 1.24255 1.01693 0.96001 1.01391 1.22267 0.96411 0.88365 0.98699 0.93091 0.95242 0.89174 0.93593 0.92148 0.92016 0.95423 0.88168 0.91000 0.88638 0.89763 0.92576 0.92578 0.85904 0.85912 0.86067 0.85953 0.85946 0.88545 0.91752 0.96244 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.55 11.36 55.43 0.63 -24.92 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.18 8.56 -34.44 -0.29 -14.47 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.05 1.37 2.26 -91.69 -0.21 1.16 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.65 5.03 -26.61 -0.13 -2.79 16 12 C -0.12 -2.38 6.09 -26.65 -0.16 -2.54 16 13 C 0.06 1.07 4.47 -3.83 -0.02 1.06 16 14 N -0.52 -9.74 4.79 -225.72 -1.08 -10.82 16 15 C 0.07 1.02 3.86 -66.90 -0.26 0.76 16 16 C -0.13 -1.69 7.39 -25.92 -0.19 -1.88 16 17 C 0.06 0.75 4.31 -25.92 -0.11 0.64 16 18 O -0.37 -4.68 10.34 -35.23 -0.36 -5.04 16 19 C 0.10 1.01 5.90 36.01 0.21 1.22 16 20 C -0.09 -0.90 5.51 -104.62 -0.58 -1.48 16 21 C -0.10 -0.97 9.70 -39.58 -0.38 -1.35 16 22 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 23 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 24 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 25 C -0.10 -0.93 9.70 -39.58 -0.38 -1.31 16 26 C -0.19 -2.67 7.19 -25.91 -0.19 -2.86 16 27 C 0.07 1.48 4.64 -3.84 -0.02 1.46 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 2.42 6.16 -51.93 -0.32 2.10 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.06 1.03 5.93 -51.93 -0.31 0.72 16 34 H 0.03 0.51 6.32 -51.93 -0.33 0.18 16 35 H 0.10 1.41 8.10 -51.93 -0.42 0.99 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.10 1.37 6.02 -51.93 -0.31 1.06 16 38 H 0.08 0.83 7.87 -51.93 -0.41 0.42 16 39 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 40 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 41 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 42 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 43 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 45 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 46 H 0.10 1.49 5.69 -51.93 -0.30 1.20 16 47 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.06 1.21 8.09 -51.93 -0.42 0.79 16 LS Contribution 381.09 15.07 5.74 5.74 Total: -1.00 -29.68 381.09 -12.36 -42.04 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -8.27 Total: 1.62 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -4.00 Total: -24.99 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.45 Total: -35.74 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.36 Total: -5.04 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.68 -12.36 -42.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930924843.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.473 kcal (2) G-P(sol) polarization free energy of solvation -29.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds