Wall clock time and date at job start Tue Mar 31 2020 12:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00129 * 2 1 4 4 H 1.48503 * 109.47074 * 269.99989 * 3 2 1 5 5 H 1.48508 * 109.47289 * 29.99351 * 3 2 1 6 6 H 1.48497 * 109.47577 * 149.99734 * 3 2 1 7 7 C 1.37874 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00076 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00164 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.49881 * 59.92142 * 9 7 2 11 11 C 1.53117 * 109.50390 * 299.80316 * 9 7 2 12 12 C 1.53117 * 109.15996 * 182.40208 * 11 9 7 13 13 C 1.53038 * 109.27802 * 57.65584 * 12 11 9 14 14 N 1.46853 * 109.52199 * 300.82151 * 13 12 11 15 15 C 1.46902 * 110.99781 * 185.84045 * 14 13 12 16 16 C 1.53784 * 113.61539 * 55.78631 * 15 14 13 17 17 C 1.53782 * 87.08244 * 219.93508 * 16 15 14 18 18 O 1.42899 * 113.61338 * 139.98155 * 17 16 15 19 19 C 1.42903 * 113.99629 * 150.00210 * 18 17 16 20 20 C 1.50701 * 109.46878 * 179.97438 * 19 18 17 21 21 C 1.38233 * 120.00099 * 269.72733 * 20 19 18 22 22 C 1.38234 * 119.99645 * 179.78840 * 21 20 19 23 23 C 1.38230 * 120.00350 * 0.44086 * 22 21 20 24 24 C 1.38238 * 119.99911 * 359.81385 * 23 22 21 25 25 C 1.38234 * 120.00093 * 359.97438 * 24 23 22 26 26 C 1.53784 * 113.69046 * 318.25056 * 15 14 13 27 27 C 1.46837 * 111.19881 * 61.74163 * 14 13 12 28 28 H 0.96997 * 119.99545 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.52294 * 302.31075 * 11 9 7 30 30 H 1.09004 * 109.52242 * 62.43628 * 11 9 7 31 31 H 1.08999 * 109.50396 * 177.59482 * 12 11 9 32 32 H 1.09003 * 109.50282 * 297.71674 * 12 11 9 33 33 H 1.08997 * 109.46502 * 180.80216 * 13 12 11 34 34 H 1.09001 * 109.46131 * 60.83579 * 13 12 11 35 35 H 1.08999 * 112.85027 * 186.98608 * 15 14 13 36 36 H 1.09000 * 113.61253 * 105.38442 * 16 15 14 37 37 H 1.08997 * 113.69349 * 334.49692 * 16 15 14 38 38 H 1.09003 * 113.61337 * 270.80399 * 17 16 15 39 39 H 1.09002 * 109.47382 * 59.99956 * 19 18 17 40 40 H 1.09001 * 109.46938 * 299.99942 * 19 18 17 41 41 H 1.08003 * 119.99927 * 359.97438 * 21 20 19 42 42 H 1.08008 * 119.99783 * 180.27179 * 22 21 20 43 43 H 1.07996 * 120.00223 * 179.83235 * 23 22 21 44 44 H 1.08004 * 119.99911 * 180.02562 * 24 23 22 45 45 H 1.07995 * 119.99943 * 180.02562 * 25 24 23 46 46 H 1.08999 * 113.61243 * 25.44579 * 26 15 14 47 47 H 1.08998 * 113.61929 * 254.54402 * 26 15 14 48 48 H 1.08998 * 109.46466 * 58.27563 * 27 14 13 49 49 H 1.08998 * 109.46471 * 178.25263 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6234 -2.5570 -0.8889 11 6 0.3736 -2.5829 1.2526 12 6 -0.3420 -3.9364 1.2752 13 6 0.6979 -5.0585 1.2389 14 7 1.5111 -4.9348 0.0223 15 6 2.4282 -6.0740 -0.1160 16 6 1.7210 -7.4395 -0.1012 17 6 2.8941 -7.9497 0.7523 18 8 2.4953 -8.8267 1.8076 19 6 3.4804 -9.8011 2.1571 20 6 2.9568 -10.6664 3.2743 21 6 3.1850 -10.3094 4.5901 22 6 2.7008 -11.1010 5.6148 23 6 1.9965 -12.2542 5.3238 24 6 1.7728 -12.6139 4.0079 25 6 2.2531 -11.8201 2.9831 26 6 3.0958 -6.4936 1.2043 27 6 2.2448 -3.6630 0.0011 28 1 -0.4849 0.8401 -0.0004 29 1 0.9971 -2.4856 2.1414 30 1 -0.3637 -1.7803 1.2352 31 1 -0.9352 -4.0193 2.1859 32 1 -0.9951 -4.0172 0.4062 33 1 0.1912 -6.0235 1.2404 34 1 1.3420 -4.9853 2.1152 35 1 3.1300 -5.9546 -0.9414 36 1 1.6584 -7.9094 -1.0827 37 1 0.7674 -7.4332 0.4266 38 1 3.7227 -8.3444 0.1642 39 1 4.3899 -9.2971 2.4842 40 1 3.7012 -10.4221 1.2890 41 1 3.7389 -9.4106 4.8175 42 1 2.8753 -10.8197 6.6429 43 1 1.6206 -12.8739 6.1243 44 1 1.2221 -13.5147 3.7804 45 1 2.0780 -12.1010 1.9551 46 1 2.5182 -6.2273 2.0895 47 1 4.1430 -6.2000 1.2769 48 1 2.8816 -3.5963 0.8832 49 1 2.8614 -3.6143 -0.8964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930924843.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:09 Heat of formation + Delta-G solvation = -13.808376 kcal Electronic energy + Delta-G solvation = -25924.547802 eV Core-core repulsion = 22430.173879 eV Total energy + Delta-G solvation = -3494.373923 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.23323 -40.17414 -38.82519 -36.98094 -34.80870 -32.91686 -32.20139 -31.79459 -31.59626 -27.13949 -26.98767 -26.69149 -25.57277 -23.48170 -23.38330 -23.14493 -22.25651 -20.73400 -19.61652 -18.58763 -17.99671 -17.72961 -16.84933 -16.57983 -16.51202 -16.19740 -16.01528 -15.42373 -15.34424 -15.08331 -14.70133 -14.56945 -14.26943 -14.16296 -14.07840 -13.68439 -13.45523 -13.30044 -13.03241 -12.92322 -12.80294 -12.68541 -12.56383 -12.07733 -12.02996 -11.92011 -11.77398 -11.68656 -11.64956 -11.50973 -11.31456 -10.79960 -10.65518 -10.37808 -10.36454 -9.82901 -9.76040 -9.02956 -8.07395 -6.21575 0.34014 0.49326 1.41364 1.41588 1.51900 2.42652 2.58321 3.01145 3.19429 3.27643 3.62401 3.71325 3.84072 3.91236 3.97281 4.04808 4.15060 4.18565 4.26253 4.28621 4.34626 4.37137 4.46129 4.52256 4.63312 4.64255 4.70273 4.76851 4.80353 4.85061 4.91329 4.97312 5.00075 5.07136 5.10494 5.15009 5.18723 5.19655 5.27393 5.42441 5.53205 5.54722 5.60548 5.64004 5.66851 5.98220 6.09375 6.13662 6.22678 6.33861 6.40020 6.48116 6.91287 7.46160 8.97385 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.025916 B = 0.002280 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.171618 B =12279.554233 C =12464.744069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 0.955 3.045 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.052 0.948 9 C 0.052 3.948 10 H -0.004 1.004 11 C -0.103 4.103 12 C -0.112 4.112 13 C 0.067 3.933 14 N -0.534 5.534 15 C 0.059 3.941 16 C -0.124 4.124 17 C 0.077 3.923 18 O -0.386 6.386 19 C 0.099 3.901 20 C -0.108 4.108 21 C -0.117 4.117 22 C -0.133 4.133 23 C -0.122 4.122 24 C -0.131 4.131 25 C -0.112 4.112 26 C -0.193 4.193 27 C 0.085 3.915 28 H 0.260 0.740 29 H 0.020 0.980 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.027 0.973 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.124 0.876 42 H 0.139 0.861 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.133 0.867 46 H 0.078 0.922 47 H 0.070 0.930 48 H 0.014 0.986 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.548 -25.889 6.921 27.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.573 4.573 8 H 0.070 0.930 9 C 0.033 3.967 10 H 0.015 0.985 11 C -0.141 4.141 12 C -0.150 4.150 13 C -0.060 4.060 14 N -0.257 5.257 15 C -0.050 4.050 16 C -0.162 4.162 17 C 0.019 3.981 18 O -0.305 6.305 19 C 0.023 3.977 20 C -0.108 4.108 21 C -0.135 4.135 22 C -0.151 4.151 23 C -0.140 4.140 24 C -0.149 4.149 25 C -0.130 4.130 26 C -0.233 4.233 27 C -0.042 4.042 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.045 0.955 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.130 0.870 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.142 0.858 42 H 0.157 0.843 43 H 0.162 0.838 44 H 0.162 0.838 45 H 0.151 0.849 46 H 0.096 0.904 47 H 0.089 0.911 48 H 0.032 0.968 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.903 -25.753 6.602 27.233 hybrid contribution 0.982 1.455 0.594 1.853 sum 6.885 -24.298 7.196 26.260 Atomic orbital electron populations 1.70044 1.07196 1.27041 1.51259 1.25743 0.95682 1.02388 0.94841 0.85608 0.78688 0.79404 0.78246 1.20065 1.20935 1.19327 1.21522 0.92983 0.92141 1.50698 0.92995 1.18602 0.93041 0.91473 0.93603 0.98537 1.21453 0.99092 0.96125 0.97435 1.21606 0.97609 0.95022 1.00742 1.22053 0.94907 0.98715 0.90330 1.61888 1.23994 1.01913 1.37871 1.23066 0.94380 0.90103 0.97406 1.23342 0.98402 0.94014 1.00421 1.23533 0.98119 0.87833 0.88569 1.88023 1.41985 1.46036 1.54460 1.21478 0.90896 0.89576 0.95772 1.19835 1.00582 0.96068 0.94298 1.21293 0.99988 0.99683 0.92550 1.21451 0.98426 0.95357 0.99886 1.21543 0.98076 0.96989 0.97401 1.21484 1.00037 1.00530 0.92812 1.21318 0.96806 0.94416 1.00441 1.24188 1.01572 0.97738 0.99803 1.21912 0.95223 0.88663 0.98436 0.93092 0.96096 0.92403 0.91570 0.93080 0.89896 0.95507 0.87057 0.89170 0.89975 0.87006 0.91992 0.90830 0.85798 0.84325 0.83834 0.83850 0.84893 0.90401 0.91103 0.96786 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.19 11.36 21.45 0.24 -53.95 16 2 C 0.01 0.68 5.30 84.65 0.45 1.13 16 3 Si 0.95 44.34 29.54 68.60 2.03 46.37 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.53 -30.21 8.56 25.60 0.22 -29.99 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 9 C 0.05 2.70 2.26 -11.49 -0.03 2.67 16 10 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 11 C -0.10 -5.11 5.03 30.67 0.15 -4.96 16 12 C -0.11 -4.54 6.09 30.65 0.19 -4.35 16 13 C 0.07 2.40 4.47 86.32 0.39 2.79 16 14 N -0.53 -19.57 4.79 -868.03 -4.16 -23.73 16 15 C 0.06 1.67 3.86 45.44 0.18 1.85 16 16 C -0.12 -2.95 7.39 31.12 0.23 -2.72 16 17 C 0.08 1.65 4.31 31.12 0.13 1.78 16 18 O -0.39 -9.10 10.34 -148.98 -1.54 -10.64 16 19 C 0.10 1.79 5.90 71.24 0.42 2.21 16 20 C -0.11 -2.08 5.51 -19.86 -0.11 -2.19 16 21 C -0.12 -2.20 9.70 22.27 0.22 -1.98 16 22 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 23 C -0.12 -1.75 10.05 22.27 0.22 -1.53 16 24 C -0.13 -1.93 10.05 22.27 0.22 -1.70 16 25 C -0.11 -1.91 9.70 22.27 0.22 -1.69 16 26 C -0.19 -5.01 7.19 31.12 0.22 -4.79 16 27 C 0.09 3.67 4.64 86.33 0.40 4.07 16 28 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 29 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 3.24 6.16 -2.38 -0.01 3.22 16 31 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.08 2.64 5.93 -2.39 -0.01 2.62 16 34 H 0.03 0.97 6.32 -2.39 -0.02 0.96 16 35 H 0.11 2.89 8.10 -2.39 -0.02 2.87 16 36 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.08 2.20 6.02 -2.39 -0.01 2.18 16 38 H 0.11 1.79 7.87 -2.39 -0.02 1.77 16 39 H 0.06 1.02 8.08 -2.39 -0.02 1.00 16 40 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 41 H 0.12 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 44 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 45 H 0.13 1.86 8.06 -2.91 -0.02 1.84 16 46 H 0.08 2.33 5.69 -2.39 -0.01 2.32 16 47 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.06 2.48 8.09 -2.39 -0.02 2.46 16 Total: -1.00 -65.27 381.09 1.43 -63.84 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.91 Total: 19.43 kcal Atomic # 6 Polarization: -45.26 SS G_CDS: 3.95 Total: -41.31 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -3.91 Total: -77.68 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -1.54 Total: -10.64 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -65.27 1.43 -63.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930924843.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.029 kcal (2) G-P(sol) polarization free energy of solvation -65.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds