Wall clock time and date at job start Tue Mar 31 2020 11:20:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86799 * 119.99544 * 2 1
4 4 H 1.48501 * 109.47284 * 269.99785 * 3 2 1
5 5 H 1.48501 * 109.47509 * 30.00032 * 3 2 1
6 6 H 1.48511 * 109.47109 * 150.00199 * 3 2 1
7 7 C 1.37871 * 120.00253 * 179.97438 * 2 1 3
8 8 H 1.07998 * 119.99848 * 179.97438 * 7 2 1
9 9 C 1.50702 * 119.99873 * 0.02562 * 7 2 1
10 10 C 1.53004 * 109.46680 * 179.97438 * 9 7 2
11 11 C 1.53006 * 109.46988 * 179.97438 * 10 9 7
12 12 C 1.53006 * 109.47091 * 300.00712 * 11 10 9
13 13 N 1.46907 * 109.46431 * 299.99647 * 12 11 10
14 14 C 1.46904 * 110.99396 * 207.77902 * 13 12 11
15 15 C 1.52997 * 109.46813 * 175.05521 * 14 13 12
16 16 C 1.50697 * 113.00142 * 65.55513 * 15 14 13
17 17 C 1.38236 * 119.99801 * 6.08257 * 16 15 14
18 18 C 1.38233 * 119.99504 * 179.76801 * 17 16 15
19 19 C 1.38237 * 120.00553 * 0.50096 * 18 17 16
20 20 C 1.38231 * 119.99427 * 359.75282 * 19 18 17
21 21 C 1.38235 * 120.00000 * 186.35276 * 16 15 14
22 22 C 1.54038 * 113.81772 * 293.72696 * 15 14 13
23 23 O 1.44442 * 85.42964 * 223.23808 * 22 15 14
24 24 C 1.44178 * 93.37911 * 24.08941 * 23 22 15
25 25 C 1.52998 * 109.47530 * 59.99353 * 12 11 10
26 26 C 1.52994 * 109.47141 * 299.99591 * 9 7 2
27 27 H 0.96999 * 120.00160 * 0.02562 * 1 2 3
28 28 H 1.08999 * 109.47090 * 60.00402 * 9 7 2
29 29 H 1.08997 * 109.47170 * 60.00702 * 10 9 7
30 30 H 1.08993 * 109.47480 * 299.99529 * 10 9 7
31 31 H 1.09004 * 109.46855 * 59.99931 * 11 10 9
32 32 H 1.08992 * 109.47015 * 180.02562 * 11 10 9
33 33 H 1.09000 * 109.46893 * 180.02562 * 12 11 10
34 34 H 1.00900 * 111.00378 * 331.73098 * 13 12 11
35 35 H 1.08991 * 109.47378 * 295.05352 * 14 13 12
36 36 H 1.09009 * 109.47146 * 55.05619 * 14 13 12
37 37 H 1.07991 * 119.99985 * 359.97438 * 17 16 15
38 38 H 1.08001 * 119.99604 * 180.23356 * 18 17 16
39 39 H 1.07995 * 120.00192 * 179.72743 * 19 18 17
40 40 H 1.08005 * 120.00079 * 179.97438 * 20 19 18
41 41 H 1.08004 * 120.00268 * 0.02562 * 21 16 15
42 42 H 1.09005 * 113.86506 * 337.34467 * 22 15 14
43 43 H 1.09001 * 113.86491 * 109.04545 * 22 15 14
44 44 H 1.08999 * 113.86902 * 221.77067 * 24 23 22
45 45 H 1.08997 * 113.86828 * 90.06158 * 24 23 22
46 46 H 1.09006 * 109.46658 * 60.00437 * 25 12 11
47 47 H 1.08998 * 109.47015 * 179.97438 * 25 12 11
48 48 H 1.09000 * 109.47296 * 60.00113 * 26 9 7
49 49 H 1.09004 * 109.47014 * 299.99984 * 26 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 2.4966 2.0465 -1.4001
5 1 1.4465 2.6527 0.7000
6 1 3.5467 1.4403 0.7000
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1939 0.0001
9 6 1.2511 -2.4991 0.0005
10 6 2.2455 -3.6620 0.0005
11 6 1.4805 -4.9871 0.0012
12 6 0.6012 -5.0678 1.2507
13 7 1.4462 -4.9895 2.4499
14 6 0.8213 -5.6887 3.5806
15 6 1.7816 -5.6921 4.7717
16 6 2.0436 -4.3135 5.3208
17 6 1.3416 -3.2288 4.8292
18 6 1.5786 -1.9649 5.3364
19 6 2.5249 -1.7840 6.3277
20 6 3.2305 -2.8679 6.8156
21 6 2.9899 -4.1327 6.3122
22 6 3.0583 -6.5220 4.5390
23 8 2.8462 -7.0110 5.8815
24 6 1.4315 -6.7350 5.8500
25 6 -0.3931 -3.9049 1.2507
26 6 0.3711 -2.5799 1.2495
27 1 -0.4850 0.8400 -0.0004
28 1 0.6248 -2.5571 -0.8897
29 1 2.8720 -3.6042 0.8905
30 1 2.8721 -3.6043 -0.8894
31 1 0.8536 -5.0451 -0.8886
32 1 2.1889 -5.8154 0.0016
33 1 0.0566 -6.0120 1.2514
34 1 2.3695 -5.3525 2.2660
35 1 -0.1007 -5.1782 3.8588
36 1 0.5955 -6.7156 3.2930
37 1 0.6058 -3.3694 4.0514
38 1 1.0275 -1.1180 4.9549
39 1 2.7131 -0.7959 6.7208
40 1 3.9701 -2.7267 7.5899
41 1 3.5417 -4.9794 6.6929
42 1 2.9530 -7.2867 3.7693
43 1 3.9603 -5.9208 4.4245
44 1 1.0459 -6.3024 6.7731
45 1 0.8283 -7.5648 5.4816
46 1 -1.0200 -3.9630 0.3609
47 1 -1.0197 -3.9627 2.1406
48 1 -0.3373 -1.7515 1.2491
49 1 0.9975 -2.5220 2.1397
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001173328398.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:20:10
Heat of formation + Delta-G solvation = 3.234688 kcal
Electronic energy + Delta-G solvation = -27878.766085 eV
Core-core repulsion = 24385.131205 eV
Total energy + Delta-G solvation = -3493.634880 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.21899 -38.34590 -38.17456 -34.76115 -32.75965 -31.33205 -30.56666 -29.71238
-29.17551 -27.89857 -26.69369 -24.75280 -23.91766 -22.56831 -21.92996 -21.45271
-20.52134 -19.11766 -18.15751 -17.16005 -16.23794 -16.17807 -15.88361 -15.60041
-15.01260 -14.82303 -14.51466 -14.34706 -14.07018 -13.82427 -13.37110 -13.20114
-12.86718 -12.68554 -12.50300 -12.21069 -12.17804 -11.92652 -11.47566 -11.43129
-11.21995 -10.99408 -10.97891 -10.90427 -10.70765 -10.57100 -10.22408 -10.17224
-9.99051 -9.69499 -9.66820 -9.21745 -8.82223 -8.56930 -8.48779 -8.45012
-8.15460 -7.94536 -5.87044 -3.91691 1.57802 1.75574 3.35550 3.42419
3.46504 3.52646 3.84748 4.27676 4.49589 4.52486 4.77990 4.85257
5.04277 5.11905 5.26437 5.35515 5.38993 5.42343 5.44574 5.47318
5.49612 5.62991 5.69080 5.71533 5.79679 5.85437 5.92844 5.97184
6.02588 6.17742 6.29884 6.34242 6.39241 6.43573 6.50900 6.56150
6.75754 6.80746 6.88485 6.90313 6.96176 7.05839 7.30733 7.32219
7.42050 7.57034 7.67717 7.74583 7.89559 8.22845 8.32884 8.62614
9.12222 9.71825 11.18101
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.012944 B = 0.004909 C = 0.003941
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2162.591730 B = 5702.741189 C = 7103.280371
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.891 5.891
2 C 0.062 3.938
3 Si 0.883 3.117
4 H -0.283 1.283
5 H -0.288 1.288
6 H -0.275 1.275
7 C -0.504 4.504
8 H 0.050 0.950
9 C 0.053 3.947
10 C -0.102 4.102
11 C -0.119 4.119
12 C 0.094 3.906
13 N -0.664 5.664
14 C 0.066 3.934
15 C -0.078 4.078
16 C -0.065 4.065
17 C -0.076 4.076
18 C -0.120 4.120
19 C -0.120 4.120
20 C -0.133 4.133
21 C -0.115 4.115
22 C 0.045 3.955
23 O -0.379 6.379
24 C 0.048 3.952
25 C -0.106 4.106
26 C -0.099 4.099
27 H 0.257 0.743
28 H 0.016 0.984
29 H 0.056 0.944
30 H 0.038 0.962
31 H 0.059 0.941
32 H 0.040 0.960
33 H 0.026 0.974
34 H 0.336 0.664
35 H 0.078 0.922
36 H 0.030 0.970
37 H 0.141 0.859
38 H 0.122 0.878
39 H 0.115 0.885
40 H 0.114 0.886
41 H 0.123 0.877
42 H 0.080 0.920
43 H 0.095 0.905
44 H 0.092 0.908
45 H 0.081 0.919
46 H 0.048 0.952
47 H 0.037 0.963
48 H 0.081 0.919
49 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.502 -12.419 11.023 16.674
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.531 5.531
2 C -0.138 4.138
3 Si 0.712 3.288
4 H -0.210 1.210
5 H -0.214 1.214
6 H -0.200 1.200
7 C -0.542 4.542
8 H 0.069 0.931
9 C 0.035 3.965
10 C -0.140 4.140
11 C -0.157 4.157
12 C -0.015 4.015
13 N -0.296 5.296
14 C -0.064 4.064
15 C -0.079 4.079
16 C -0.065 4.065
17 C -0.094 4.094
18 C -0.138 4.138
19 C -0.138 4.138
20 C -0.151 4.151
21 C -0.133 4.133
22 C -0.032 4.032
23 O -0.297 6.297
24 C -0.030 4.030
25 C -0.144 4.144
26 C -0.137 4.137
27 H 0.066 0.934
28 H 0.034 0.966
29 H 0.075 0.925
30 H 0.056 0.944
31 H 0.078 0.922
32 H 0.059 0.941
33 H 0.044 0.956
34 H 0.154 0.846
35 H 0.097 0.903
36 H 0.048 0.952
37 H 0.159 0.841
38 H 0.140 0.860
39 H 0.133 0.867
40 H 0.132 0.868
41 H 0.141 0.859
42 H 0.098 0.902
43 H 0.113 0.887
44 H 0.110 0.890
45 H 0.099 0.901
46 H 0.067 0.933
47 H 0.055 0.945
48 H 0.099 0.901
49 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 1.288 -11.785 11.399 16.447
hybrid contribution 0.505 0.150 -0.500 0.726
sum 1.793 -11.635 10.899 16.044
Atomic orbital electron populations
1.69890 1.05737 1.25934 1.51543 1.24912 0.94743 0.98680 0.95509
0.86742 0.80039 0.84158 0.77910 1.20966 1.21400 1.20047 1.21219
0.92705 0.90886 1.49424 0.93145 1.18584 0.92533 0.91219 0.94207
1.21539 0.98645 0.93903 0.99881 1.21765 0.98239 0.98871 0.96821
1.21546 0.94166 0.96768 0.88997 1.60466 1.05104 1.58953 1.05044
1.22035 0.97564 0.96156 0.90630 1.22444 0.96114 0.93816 0.95525
1.18997 0.97846 0.92642 0.97024 1.21365 0.99047 0.91456 0.97493
1.21253 0.98301 0.97696 0.96523 1.21154 0.96652 0.98475 0.97503
1.20999 1.00421 0.92887 1.00840 1.21075 0.98021 0.97257 0.96922
1.24132 0.98662 0.95205 0.85167 1.89679 1.22316 1.86942 1.30795
1.24072 0.84187 0.95615 0.99109 1.21612 0.96452 0.97203 0.99117
1.21468 0.99236 0.93611 0.99406 0.93350 0.96602 0.92545 0.94357
0.92189 0.94088 0.95611 0.84594 0.90332 0.95242 0.84111 0.85966
0.86705 0.86786 0.85898 0.90223 0.88650 0.88989 0.90053 0.93298
0.94455 0.90107 0.92892
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.33 11.32 55.43 0.63 -24.71 16
2 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16
3 Si 0.88 21.48 29.54 -169.99 -5.02 16.46 16
4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16
5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
7 C -0.50 -13.77 8.56 -34.44 -0.29 -14.06 16
8 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16
9 C 0.05 1.28 2.10 -91.77 -0.19 1.09 16
10 C -0.10 -2.05 4.98 -26.73 -0.13 -2.18 16
11 C -0.12 -1.94 5.28 -26.72 -0.14 -2.09 16
12 C 0.09 1.45 2.83 -67.71 -0.19 1.26 16
13 N -0.66 -9.28 3.71 -106.72 -0.40 -9.67 16
14 C 0.07 0.78 4.14 -3.82 -0.02 0.76 16
15 C -0.08 -0.89 1.08 -154.58 -0.17 -1.06 16
16 C -0.07 -0.88 5.17 -104.63 -0.54 -1.42 16
17 C -0.08 -1.16 8.61 -39.58 -0.34 -1.50 16
18 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16
19 C -0.12 -1.66 10.05 -39.58 -0.40 -2.05 16
20 C -0.13 -1.73 10.05 -39.58 -0.40 -2.13 16
21 C -0.11 -1.51 8.83 -39.58 -0.35 -1.86 16
22 C 0.05 0.49 7.21 37.64 0.27 0.76 16
23 O -0.38 -4.55 10.95 -35.23 -0.39 -4.94 16
24 C 0.05 0.48 8.16 37.64 0.31 0.79 16
25 C -0.11 -1.93 5.57 -26.76 -0.15 -2.08 16
26 C -0.10 -2.23 4.82 -26.76 -0.13 -2.36 16
27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16
28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16
29 H 0.06 1.15 7.40 -51.93 -0.38 0.76 16
30 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16
31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16
32 H 0.04 0.58 8.12 -51.93 -0.42 0.16 16
33 H 0.03 0.37 7.68 -51.93 -0.40 -0.03 16
34 H 0.34 4.52 7.30 -39.29 -0.29 4.23 16
35 H 0.08 0.99 6.75 -51.93 -0.35 0.64 16
36 H 0.03 0.32 7.86 -51.92 -0.41 -0.09 16
37 H 0.14 2.28 4.80 -52.49 -0.25 2.03 16
38 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16
39 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16
40 H 0.11 1.23 8.06 -52.48 -0.42 0.81 16
41 H 0.12 1.54 6.53 -52.48 -0.34 1.20 16
42 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16
43 H 0.10 1.06 7.93 -51.93 -0.41 0.65 16
44 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16
45 H 0.08 0.69 8.05 -51.93 -0.42 0.27 16
46 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
47 H 0.04 0.64 7.75 -51.93 -0.40 0.23 16
48 H 0.08 2.10 6.07 -51.93 -0.32 1.78 16
49 H 0.05 1.20 6.45 -51.93 -0.33 0.87 16
LS Contribution 371.30 15.07 5.60 5.60
Total: -1.00 -28.49 371.30 -11.00 -39.49
By element:
Atomic # 1 Polarization: 14.60 SS G_CDS: -8.07 Total: 6.53 kcal
Atomic # 6 Polarization: -25.40 SS G_CDS: -3.35 Total: -28.75 kcal
Atomic # 7 Polarization: -34.61 SS G_CDS: 0.23 Total: -34.38 kcal
Atomic # 8 Polarization: -4.55 SS G_CDS: -0.39 Total: -4.94 kcal
Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal
Total LS contribution 5.60 Total: 5.60 kcal
Total: -28.49 -11.00 -39.49 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001173328398.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.725 kcal
(2) G-P(sol) polarization free energy of solvation -28.487 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.238 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.003 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.490 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.235 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds