Wall clock time and date at job start Tue Mar 31 2020 11:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99544 * 2 1 4 4 H 1.48501 * 109.47284 * 269.99785 * 3 2 1 5 5 H 1.48501 * 109.47509 * 30.00032 * 3 2 1 6 6 H 1.48511 * 109.47109 * 150.00199 * 3 2 1 7 7 C 1.37871 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99848 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99873 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46680 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46988 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47091 * 300.00712 * 11 10 9 13 13 N 1.46907 * 109.46431 * 299.99647 * 12 11 10 14 14 C 1.46904 * 110.99396 * 207.77902 * 13 12 11 15 15 C 1.52997 * 109.46813 * 175.05521 * 14 13 12 16 16 C 1.50697 * 113.00142 * 65.55513 * 15 14 13 17 17 C 1.38236 * 119.99801 * 6.08257 * 16 15 14 18 18 C 1.38233 * 119.99504 * 179.76801 * 17 16 15 19 19 C 1.38237 * 120.00553 * 0.50096 * 18 17 16 20 20 C 1.38231 * 119.99427 * 359.75282 * 19 18 17 21 21 C 1.38235 * 120.00000 * 186.35276 * 16 15 14 22 22 C 1.54038 * 113.81772 * 293.72696 * 15 14 13 23 23 O 1.44442 * 85.42964 * 223.23808 * 22 15 14 24 24 C 1.44178 * 93.37911 * 24.08941 * 23 22 15 25 25 C 1.52998 * 109.47530 * 59.99353 * 12 11 10 26 26 C 1.52994 * 109.47141 * 299.99591 * 9 7 2 27 27 H 0.96999 * 120.00160 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47090 * 60.00402 * 9 7 2 29 29 H 1.08997 * 109.47170 * 60.00702 * 10 9 7 30 30 H 1.08993 * 109.47480 * 299.99529 * 10 9 7 31 31 H 1.09004 * 109.46855 * 59.99931 * 11 10 9 32 32 H 1.08992 * 109.47015 * 180.02562 * 11 10 9 33 33 H 1.09000 * 109.46893 * 180.02562 * 12 11 10 34 34 H 1.00900 * 111.00378 * 331.73098 * 13 12 11 35 35 H 1.08991 * 109.47378 * 295.05352 * 14 13 12 36 36 H 1.09009 * 109.47146 * 55.05619 * 14 13 12 37 37 H 1.07991 * 119.99985 * 359.97438 * 17 16 15 38 38 H 1.08001 * 119.99604 * 180.23356 * 18 17 16 39 39 H 1.07995 * 120.00192 * 179.72743 * 19 18 17 40 40 H 1.08005 * 120.00079 * 179.97438 * 20 19 18 41 41 H 1.08004 * 120.00268 * 0.02562 * 21 16 15 42 42 H 1.09005 * 113.86506 * 337.34467 * 22 15 14 43 43 H 1.09001 * 113.86491 * 109.04545 * 22 15 14 44 44 H 1.08999 * 113.86902 * 221.77067 * 24 23 22 45 45 H 1.08997 * 113.86828 * 90.06158 * 24 23 22 46 46 H 1.09006 * 109.46658 * 60.00437 * 25 12 11 47 47 H 1.08998 * 109.47015 * 179.97438 * 25 12 11 48 48 H 1.09000 * 109.47296 * 60.00113 * 26 9 7 49 49 H 1.09004 * 109.47014 * 299.99984 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 6 0.6012 -5.0678 1.2507 13 7 1.4462 -4.9895 2.4499 14 6 0.8213 -5.6887 3.5806 15 6 1.7816 -5.6921 4.7717 16 6 2.0436 -4.3135 5.3208 17 6 1.3416 -3.2288 4.8292 18 6 1.5786 -1.9649 5.3364 19 6 2.5249 -1.7840 6.3277 20 6 3.2305 -2.8679 6.8156 21 6 2.9899 -4.1327 6.3122 22 6 3.0583 -6.5220 4.5390 23 8 2.8462 -7.0110 5.8815 24 6 1.4315 -6.7350 5.8500 25 6 -0.3931 -3.9049 1.2507 26 6 0.3711 -2.5799 1.2495 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 2.8720 -3.6042 0.8905 30 1 2.8721 -3.6043 -0.8894 31 1 0.8536 -5.0451 -0.8886 32 1 2.1889 -5.8154 0.0016 33 1 0.0566 -6.0120 1.2514 34 1 2.3695 -5.3525 2.2660 35 1 -0.1007 -5.1782 3.8588 36 1 0.5955 -6.7156 3.2930 37 1 0.6058 -3.3694 4.0514 38 1 1.0275 -1.1180 4.9549 39 1 2.7131 -0.7959 6.7208 40 1 3.9701 -2.7267 7.5899 41 1 3.5417 -4.9794 6.6929 42 1 2.9530 -7.2867 3.7693 43 1 3.9603 -5.9208 4.4245 44 1 1.0459 -6.3024 6.7731 45 1 0.8283 -7.5648 5.4816 46 1 -1.0200 -3.9630 0.3609 47 1 -1.0197 -3.9627 2.1406 48 1 -0.3373 -1.7515 1.2491 49 1 0.9975 -2.5220 2.1397 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328398.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:10 Heat of formation + Delta-G solvation = 3.234688 kcal Electronic energy + Delta-G solvation = -27878.766085 eV Core-core repulsion = 24385.131205 eV Total energy + Delta-G solvation = -3493.634880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.21899 -38.34590 -38.17456 -34.76115 -32.75965 -31.33205 -30.56666 -29.71238 -29.17551 -27.89857 -26.69369 -24.75280 -23.91766 -22.56831 -21.92996 -21.45271 -20.52134 -19.11766 -18.15751 -17.16005 -16.23794 -16.17807 -15.88361 -15.60041 -15.01260 -14.82303 -14.51466 -14.34706 -14.07018 -13.82427 -13.37110 -13.20114 -12.86718 -12.68554 -12.50300 -12.21069 -12.17804 -11.92652 -11.47566 -11.43129 -11.21995 -10.99408 -10.97891 -10.90427 -10.70765 -10.57100 -10.22408 -10.17224 -9.99051 -9.69499 -9.66820 -9.21745 -8.82223 -8.56930 -8.48779 -8.45012 -8.15460 -7.94536 -5.87044 -3.91691 1.57802 1.75574 3.35550 3.42419 3.46504 3.52646 3.84748 4.27676 4.49589 4.52486 4.77990 4.85257 5.04277 5.11905 5.26437 5.35515 5.38993 5.42343 5.44574 5.47318 5.49612 5.62991 5.69080 5.71533 5.79679 5.85437 5.92844 5.97184 6.02588 6.17742 6.29884 6.34242 6.39241 6.43573 6.50900 6.56150 6.75754 6.80746 6.88485 6.90313 6.96176 7.05839 7.30733 7.32219 7.42050 7.57034 7.67717 7.74583 7.89559 8.22845 8.32884 8.62614 9.12222 9.71825 11.18101 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012944 B = 0.004909 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.591730 B = 5702.741189 C = 7103.280371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.504 4.504 8 H 0.050 0.950 9 C 0.053 3.947 10 C -0.102 4.102 11 C -0.119 4.119 12 C 0.094 3.906 13 N -0.664 5.664 14 C 0.066 3.934 15 C -0.078 4.078 16 C -0.065 4.065 17 C -0.076 4.076 18 C -0.120 4.120 19 C -0.120 4.120 20 C -0.133 4.133 21 C -0.115 4.115 22 C 0.045 3.955 23 O -0.379 6.379 24 C 0.048 3.952 25 C -0.106 4.106 26 C -0.099 4.099 27 H 0.257 0.743 28 H 0.016 0.984 29 H 0.056 0.944 30 H 0.038 0.962 31 H 0.059 0.941 32 H 0.040 0.960 33 H 0.026 0.974 34 H 0.336 0.664 35 H 0.078 0.922 36 H 0.030 0.970 37 H 0.141 0.859 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.123 0.877 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.048 0.952 47 H 0.037 0.963 48 H 0.081 0.919 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.502 -12.419 11.023 16.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.712 3.288 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.035 3.965 10 C -0.140 4.140 11 C -0.157 4.157 12 C -0.015 4.015 13 N -0.296 5.296 14 C -0.064 4.064 15 C -0.079 4.079 16 C -0.065 4.065 17 C -0.094 4.094 18 C -0.138 4.138 19 C -0.138 4.138 20 C -0.151 4.151 21 C -0.133 4.133 22 C -0.032 4.032 23 O -0.297 6.297 24 C -0.030 4.030 25 C -0.144 4.144 26 C -0.137 4.137 27 H 0.066 0.934 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.154 0.846 35 H 0.097 0.903 36 H 0.048 0.952 37 H 0.159 0.841 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.141 0.859 42 H 0.098 0.902 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.099 0.901 46 H 0.067 0.933 47 H 0.055 0.945 48 H 0.099 0.901 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.288 -11.785 11.399 16.447 hybrid contribution 0.505 0.150 -0.500 0.726 sum 1.793 -11.635 10.899 16.044 Atomic orbital electron populations 1.69890 1.05737 1.25934 1.51543 1.24912 0.94743 0.98680 0.95509 0.86742 0.80039 0.84158 0.77910 1.20966 1.21400 1.20047 1.21219 0.92705 0.90886 1.49424 0.93145 1.18584 0.92533 0.91219 0.94207 1.21539 0.98645 0.93903 0.99881 1.21765 0.98239 0.98871 0.96821 1.21546 0.94166 0.96768 0.88997 1.60466 1.05104 1.58953 1.05044 1.22035 0.97564 0.96156 0.90630 1.22444 0.96114 0.93816 0.95525 1.18997 0.97846 0.92642 0.97024 1.21365 0.99047 0.91456 0.97493 1.21253 0.98301 0.97696 0.96523 1.21154 0.96652 0.98475 0.97503 1.20999 1.00421 0.92887 1.00840 1.21075 0.98021 0.97257 0.96922 1.24132 0.98662 0.95205 0.85167 1.89679 1.22316 1.86942 1.30795 1.24072 0.84187 0.95615 0.99109 1.21612 0.96452 0.97203 0.99117 1.21468 0.99236 0.93611 0.99406 0.93350 0.96602 0.92545 0.94357 0.92189 0.94088 0.95611 0.84594 0.90332 0.95242 0.84111 0.85966 0.86705 0.86786 0.85898 0.90223 0.88650 0.88989 0.90053 0.93298 0.94455 0.90107 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 11.32 55.43 0.63 -24.71 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 3 Si 0.88 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.50 -13.77 8.56 -34.44 -0.29 -14.06 16 8 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 9 C 0.05 1.28 2.10 -91.77 -0.19 1.09 16 10 C -0.10 -2.05 4.98 -26.73 -0.13 -2.18 16 11 C -0.12 -1.94 5.28 -26.72 -0.14 -2.09 16 12 C 0.09 1.45 2.83 -67.71 -0.19 1.26 16 13 N -0.66 -9.28 3.71 -106.72 -0.40 -9.67 16 14 C 0.07 0.78 4.14 -3.82 -0.02 0.76 16 15 C -0.08 -0.89 1.08 -154.58 -0.17 -1.06 16 16 C -0.07 -0.88 5.17 -104.63 -0.54 -1.42 16 17 C -0.08 -1.16 8.61 -39.58 -0.34 -1.50 16 18 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 19 C -0.12 -1.66 10.05 -39.58 -0.40 -2.05 16 20 C -0.13 -1.73 10.05 -39.58 -0.40 -2.13 16 21 C -0.11 -1.51 8.83 -39.58 -0.35 -1.86 16 22 C 0.05 0.49 7.21 37.64 0.27 0.76 16 23 O -0.38 -4.55 10.95 -35.23 -0.39 -4.94 16 24 C 0.05 0.48 8.16 37.64 0.31 0.79 16 25 C -0.11 -1.93 5.57 -26.76 -0.15 -2.08 16 26 C -0.10 -2.23 4.82 -26.76 -0.13 -2.36 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 1.15 7.40 -51.93 -0.38 0.76 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.04 0.58 8.12 -51.93 -0.42 0.16 16 33 H 0.03 0.37 7.68 -51.93 -0.40 -0.03 16 34 H 0.34 4.52 7.30 -39.29 -0.29 4.23 16 35 H 0.08 0.99 6.75 -51.93 -0.35 0.64 16 36 H 0.03 0.32 7.86 -51.92 -0.41 -0.09 16 37 H 0.14 2.28 4.80 -52.49 -0.25 2.03 16 38 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16 39 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.11 1.23 8.06 -52.48 -0.42 0.81 16 41 H 0.12 1.54 6.53 -52.48 -0.34 1.20 16 42 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 43 H 0.10 1.06 7.93 -51.93 -0.41 0.65 16 44 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 45 H 0.08 0.69 8.05 -51.93 -0.42 0.27 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.04 0.64 7.75 -51.93 -0.40 0.23 16 48 H 0.08 2.10 6.07 -51.93 -0.32 1.78 16 49 H 0.05 1.20 6.45 -51.93 -0.33 0.87 16 LS Contribution 371.30 15.07 5.60 5.60 Total: -1.00 -28.49 371.30 -11.00 -39.49 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -8.07 Total: 6.53 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: -3.35 Total: -28.75 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.23 Total: -34.38 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.39 Total: -4.94 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.49 -11.00 -39.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328398.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.725 kcal (2) G-P(sol) polarization free energy of solvation -28.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds