Wall clock time and date at job start Tue Mar 31 2020 11:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99544 * 2 1 4 4 H 1.48501 * 109.47284 * 269.99785 * 3 2 1 5 5 H 1.48501 * 109.47509 * 30.00032 * 3 2 1 6 6 H 1.48511 * 109.47109 * 150.00199 * 3 2 1 7 7 C 1.37871 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99848 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99873 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46680 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46988 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47091 * 300.00712 * 11 10 9 13 13 N 1.46907 * 109.46431 * 299.99647 * 12 11 10 14 14 C 1.46904 * 110.99396 * 207.77902 * 13 12 11 15 15 C 1.52997 * 109.46813 * 175.05521 * 14 13 12 16 16 C 1.50697 * 113.00142 * 65.55513 * 15 14 13 17 17 C 1.38236 * 119.99801 * 6.08257 * 16 15 14 18 18 C 1.38233 * 119.99504 * 179.76801 * 17 16 15 19 19 C 1.38237 * 120.00553 * 0.50096 * 18 17 16 20 20 C 1.38231 * 119.99427 * 359.75282 * 19 18 17 21 21 C 1.38235 * 120.00000 * 186.35276 * 16 15 14 22 22 C 1.54038 * 113.81772 * 293.72696 * 15 14 13 23 23 O 1.44442 * 85.42964 * 223.23808 * 22 15 14 24 24 C 1.44178 * 93.37911 * 24.08941 * 23 22 15 25 25 C 1.52998 * 109.47530 * 59.99353 * 12 11 10 26 26 C 1.52994 * 109.47141 * 299.99591 * 9 7 2 27 27 H 0.96999 * 120.00160 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47090 * 60.00402 * 9 7 2 29 29 H 1.08997 * 109.47170 * 60.00702 * 10 9 7 30 30 H 1.08993 * 109.47480 * 299.99529 * 10 9 7 31 31 H 1.09004 * 109.46855 * 59.99931 * 11 10 9 32 32 H 1.08992 * 109.47015 * 180.02562 * 11 10 9 33 33 H 1.09000 * 109.46893 * 180.02562 * 12 11 10 34 34 H 1.00900 * 111.00378 * 331.73098 * 13 12 11 35 35 H 1.08991 * 109.47378 * 295.05352 * 14 13 12 36 36 H 1.09009 * 109.47146 * 55.05619 * 14 13 12 37 37 H 1.07991 * 119.99985 * 359.97438 * 17 16 15 38 38 H 1.08001 * 119.99604 * 180.23356 * 18 17 16 39 39 H 1.07995 * 120.00192 * 179.72743 * 19 18 17 40 40 H 1.08005 * 120.00079 * 179.97438 * 20 19 18 41 41 H 1.08004 * 120.00268 * 0.02562 * 21 16 15 42 42 H 1.09005 * 113.86506 * 337.34467 * 22 15 14 43 43 H 1.09001 * 113.86491 * 109.04545 * 22 15 14 44 44 H 1.08999 * 113.86902 * 221.77067 * 24 23 22 45 45 H 1.08997 * 113.86828 * 90.06158 * 24 23 22 46 46 H 1.09006 * 109.46658 * 60.00437 * 25 12 11 47 47 H 1.08998 * 109.47015 * 179.97438 * 25 12 11 48 48 H 1.09000 * 109.47296 * 60.00113 * 26 9 7 49 49 H 1.09004 * 109.47014 * 299.99984 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 6 0.6012 -5.0678 1.2507 13 7 1.4462 -4.9895 2.4499 14 6 0.8213 -5.6887 3.5806 15 6 1.7816 -5.6921 4.7717 16 6 2.0436 -4.3135 5.3208 17 6 1.3416 -3.2288 4.8292 18 6 1.5786 -1.9649 5.3364 19 6 2.5249 -1.7840 6.3277 20 6 3.2305 -2.8679 6.8156 21 6 2.9899 -4.1327 6.3122 22 6 3.0583 -6.5220 4.5390 23 8 2.8462 -7.0110 5.8815 24 6 1.4315 -6.7350 5.8500 25 6 -0.3931 -3.9049 1.2507 26 6 0.3711 -2.5799 1.2495 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 2.8720 -3.6042 0.8905 30 1 2.8721 -3.6043 -0.8894 31 1 0.8536 -5.0451 -0.8886 32 1 2.1889 -5.8154 0.0016 33 1 0.0566 -6.0120 1.2514 34 1 2.3695 -5.3525 2.2660 35 1 -0.1007 -5.1782 3.8588 36 1 0.5955 -6.7156 3.2930 37 1 0.6058 -3.3694 4.0514 38 1 1.0275 -1.1180 4.9549 39 1 2.7131 -0.7959 6.7208 40 1 3.9701 -2.7267 7.5899 41 1 3.5417 -4.9794 6.6929 42 1 2.9530 -7.2867 3.7693 43 1 3.9603 -5.9208 4.4245 44 1 1.0459 -6.3024 6.7731 45 1 0.8283 -7.5648 5.4816 46 1 -1.0200 -3.9630 0.3609 47 1 -1.0197 -3.9627 2.1406 48 1 -0.3373 -1.7515 1.2491 49 1 0.9975 -2.5220 2.1397 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328398.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:09 Heat of formation + Delta-G solvation = -10.972555 kcal Electronic energy + Delta-G solvation = -27879.382157 eV Core-core repulsion = 24385.131205 eV Total energy + Delta-G solvation = -3494.250953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.11337 -39.69548 -39.28215 -36.17039 -34.41425 -32.69838 -31.69201 -31.26828 -30.55880 -29.10967 -27.49145 -26.49127 -25.12429 -23.57762 -23.15973 -22.88208 -22.18903 -20.05335 -19.68168 -18.32702 -18.12088 -17.17831 -16.77419 -16.60135 -16.54301 -16.09525 -15.93285 -15.51584 -15.27554 -15.03981 -14.72685 -14.28528 -14.21152 -14.03983 -13.89831 -13.65179 -13.17375 -13.15115 -13.10281 -12.99217 -12.69703 -12.60825 -12.46284 -12.04262 -12.00585 -11.86076 -11.83612 -11.65847 -11.52712 -11.16245 -11.03229 -10.62475 -10.52513 -10.33212 -10.21303 -9.67618 -9.50378 -9.03293 -8.00060 -6.12270 0.51309 0.65285 1.39033 1.40614 1.49958 2.46407 2.70815 2.85045 3.22540 3.26379 3.58683 3.82564 3.91478 4.09234 4.15079 4.23755 4.27308 4.33379 4.37158 4.41266 4.43766 4.64460 4.69120 4.70009 4.74917 4.80811 4.87256 4.91348 4.97239 4.98711 5.00119 5.06506 5.10906 5.18616 5.21167 5.25104 5.26480 5.32577 5.40821 5.57423 5.68410 5.69168 5.75038 5.80620 5.86837 5.90977 6.22942 6.25656 6.31592 6.39212 6.56617 6.68451 7.01746 7.54335 9.02697 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012944 B = 0.004909 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.591730 B = 5702.741189 C = 7103.280371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.940 3.060 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.524 4.524 8 H 0.043 0.957 9 C 0.049 3.951 10 C -0.093 4.093 11 C -0.112 4.112 12 C 0.105 3.895 13 N -0.677 5.677 14 C 0.071 3.929 15 C -0.080 4.080 16 C -0.063 4.063 17 C -0.092 4.092 18 C -0.144 4.144 19 C -0.128 4.128 20 C -0.133 4.133 21 C -0.117 4.117 22 C 0.050 3.950 23 O -0.395 6.395 24 C 0.054 3.946 25 C -0.100 4.100 26 C -0.083 4.083 27 H 0.256 0.744 28 H -0.020 1.020 29 H 0.054 0.946 30 H 0.030 0.970 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.342 0.658 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.126 0.874 38 H 0.107 0.893 39 H 0.130 0.870 40 H 0.139 0.861 41 H 0.133 0.867 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.038 0.962 47 H 0.047 0.953 48 H 0.038 0.962 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.574 -14.766 12.056 19.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.183 4.183 3 Si 0.767 3.233 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.563 4.563 8 H 0.061 0.939 9 C 0.031 3.969 10 C -0.130 4.130 11 C -0.150 4.150 12 C -0.004 4.004 13 N -0.310 5.310 14 C -0.058 4.058 15 C -0.081 4.081 16 C -0.063 4.063 17 C -0.110 4.110 18 C -0.163 4.163 19 C -0.146 4.146 20 C -0.151 4.151 21 C -0.135 4.135 22 C -0.027 4.027 23 O -0.314 6.314 24 C -0.023 4.023 25 C -0.138 4.138 26 C -0.121 4.121 27 H 0.065 0.935 28 H -0.002 1.002 29 H 0.073 0.927 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.162 0.838 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.144 0.856 38 H 0.125 0.875 39 H 0.148 0.852 40 H 0.157 0.843 41 H 0.151 0.849 42 H 0.119 0.881 43 H 0.107 0.893 44 H 0.111 0.889 45 H 0.123 0.877 46 H 0.057 0.943 47 H 0.066 0.934 48 H 0.057 0.943 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.367 -14.141 12.432 18.977 hybrid contribution 0.175 0.922 -0.806 1.237 sum 2.542 -13.219 11.626 17.787 Atomic orbital electron populations 1.70039 1.06906 1.26482 1.52132 1.25608 0.95517 1.01756 0.95371 0.85831 0.78913 0.80522 0.78034 1.20370 1.21037 1.19684 1.21606 0.92603 0.92724 1.49320 0.93914 1.18575 0.93052 0.91978 0.93291 1.21354 0.97762 0.94538 0.99374 1.21698 0.98589 0.97451 0.97259 1.21346 0.93566 0.96280 0.89198 1.60309 1.05379 1.60307 1.05014 1.22013 0.96987 0.96963 0.89830 1.22450 0.96811 0.92930 0.95878 1.19189 0.97107 0.93321 0.96655 1.21299 0.99706 0.92107 0.97895 1.21320 0.99452 0.97633 0.97854 1.21344 0.96363 0.99741 0.97180 1.21320 1.00321 0.92482 1.00932 1.21259 0.97848 0.97689 0.96711 1.24196 0.97807 0.95363 0.85307 1.89669 1.23313 1.87040 1.31422 1.24186 0.83754 0.95653 0.98680 1.21499 0.96914 0.96260 0.99141 1.21151 0.98144 0.94750 0.98095 0.93481 1.00190 0.92744 0.95085 0.92569 0.90621 0.92680 0.83829 0.91420 0.92774 0.85572 0.87472 0.85217 0.84289 0.84883 0.88131 0.89253 0.88877 0.87680 0.94298 0.93384 0.94327 0.93606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.08 11.32 21.45 0.24 -53.83 16 2 C 0.02 0.88 5.30 84.65 0.45 1.33 16 3 Si 0.94 45.04 29.54 68.60 2.03 47.07 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 5 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.52 -29.59 8.56 25.60 0.22 -29.37 16 8 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 9 C 0.05 2.47 2.10 -11.54 -0.02 2.45 16 10 C -0.09 -3.70 4.98 30.60 0.15 -3.55 16 11 C -0.11 -3.41 5.28 30.60 0.16 -3.25 16 12 C 0.11 2.99 2.83 44.92 0.13 3.12 16 13 N -0.68 -17.44 3.71 -491.54 -1.82 -19.26 16 14 C 0.07 1.48 4.14 86.30 0.36 1.83 16 15 C -0.08 -1.62 1.08 -52.23 -0.06 -1.68 16 16 C -0.06 -1.62 5.17 -19.87 -0.10 -1.72 16 17 C -0.09 -2.85 8.61 22.27 0.19 -2.65 16 18 C -0.14 -4.61 10.05 22.27 0.22 -4.39 16 19 C -0.13 -3.51 10.05 22.27 0.22 -3.29 16 20 C -0.13 -3.24 10.05 22.27 0.22 -3.02 16 21 C -0.12 -2.89 8.83 22.27 0.20 -2.70 16 22 C 0.05 0.92 7.21 72.30 0.52 1.44 16 23 O -0.40 -8.26 10.95 -148.98 -1.63 -9.90 16 24 C 0.05 0.93 8.16 72.30 0.59 1.52 16 25 C -0.10 -3.64 5.57 30.58 0.17 -3.47 16 26 C -0.08 -3.88 4.82 30.58 0.15 -3.74 16 27 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 28 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 29 H 0.05 2.18 7.40 -2.39 -0.02 2.17 16 30 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.08 1.84 8.12 -2.39 -0.02 1.82 16 33 H 0.06 1.32 7.68 -2.39 -0.02 1.30 16 34 H 0.34 8.16 7.30 -89.69 -0.65 7.51 16 35 H 0.07 1.58 6.75 -2.39 -0.02 1.56 16 36 H 0.05 0.90 7.86 -2.38 -0.02 0.88 16 37 H 0.13 4.21 4.80 -2.92 -0.01 4.20 16 38 H 0.11 3.59 8.06 -2.91 -0.02 3.57 16 39 H 0.13 3.04 8.06 -2.91 -0.02 3.01 16 40 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 41 H 0.13 3.02 6.53 -2.91 -0.02 3.00 16 42 H 0.10 1.46 8.10 -2.38 -0.02 1.44 16 43 H 0.09 1.76 7.93 -2.39 -0.02 1.74 16 44 H 0.09 1.57 8.09 -2.39 -0.02 1.55 16 45 H 0.11 1.33 8.05 -2.39 -0.02 1.31 16 46 H 0.04 1.47 8.14 -2.38 -0.02 1.46 16 47 H 0.05 1.63 7.75 -2.39 -0.02 1.61 16 48 H 0.04 2.11 6.07 -2.39 -0.01 2.09 16 49 H 0.05 2.17 6.45 -2.38 -0.02 2.15 16 Total: -1.00 -64.02 371.30 2.86 -61.16 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.28 Total: 25.89 kcal Atomic # 6 Polarization: -54.90 SS G_CDS: 3.77 Total: -51.12 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -1.58 Total: -73.10 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -1.63 Total: -9.90 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -64.02 2.86 -61.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328398.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.189 kcal (2) G-P(sol) polarization free energy of solvation -64.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds