Wall clock time and date at job start Tue Mar 31 2020 11:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00103 * 2 1 4 4 H 1.48506 * 109.47387 * 269.99984 * 3 2 1 5 5 H 1.48505 * 109.47320 * 30.00193 * 3 2 1 6 6 H 1.48494 * 109.47415 * 149.99814 * 3 2 1 7 7 C 1.37878 * 119.99598 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99436 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00197 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47081 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47079 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47302 * 60.00194 * 11 10 9 13 13 N 1.46904 * 109.46715 * 59.99643 * 12 11 10 14 14 C 1.46907 * 110.99439 * 155.00013 * 13 12 11 15 15 H 1.08999 * 109.67904 * 35.53011 * 14 13 12 16 16 C 1.53325 * 109.70970 * 156.05977 * 14 13 12 17 17 C 1.52737 * 108.37729 * 189.64398 * 16 14 13 18 18 C 1.50646 * 110.59218 * 308.87621 * 17 16 14 19 19 C 1.38961 * 117.69250 * 197.55764 * 18 17 16 20 20 C 1.37837 * 120.62802 * 180.38575 * 19 18 17 21 21 C 1.38764 * 119.71025 * 359.70372 * 20 19 18 22 22 O 1.35896 * 120.17287 * 180.14964 * 21 20 19 23 23 C 1.38421 * 119.65156 * 0.39125 * 21 20 19 24 24 C 1.37706 * 122.54151 * 17.73554 * 18 17 16 25 25 C 1.50635 * 122.56586 * 359.36836 * 24 18 17 26 26 C 1.53004 * 109.47123 * 300.00154 * 12 11 10 27 27 C 1.53004 * 109.46959 * 60.00203 * 9 7 2 28 28 H 0.97007 * 119.99902 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47263 * 300.00439 * 9 7 2 30 30 H 1.09000 * 109.46557 * 60.00265 * 10 9 7 31 31 H 1.08997 * 109.47484 * 300.00369 * 10 9 7 32 32 H 1.09003 * 109.47267 * 300.00011 * 11 10 9 33 33 H 1.09004 * 109.46976 * 180.02562 * 11 10 9 34 34 H 1.08994 * 109.47120 * 179.97438 * 12 11 10 35 35 H 1.00894 * 111.00244 * 278.94889 * 13 12 11 36 36 H 1.08997 * 109.69038 * 309.36887 * 16 14 13 37 37 H 1.09005 * 109.68117 * 69.89054 * 16 14 13 38 38 H 1.08998 * 109.24751 * 69.16979 * 17 16 14 39 39 H 1.09002 * 109.24595 * 188.63323 * 17 16 14 40 40 H 1.07999 * 119.68915 * 0.35950 * 19 18 17 41 41 H 1.08001 * 120.14254 * 179.97438 * 20 19 18 42 42 H 0.96704 * 114.00007 * 270.24259 * 22 21 20 43 43 H 1.08002 * 119.74968 * 179.87637 * 23 21 20 44 44 H 1.08998 * 109.25558 * 137.99214 * 25 24 18 45 45 H 1.09000 * 109.25455 * 257.41990 * 25 24 18 46 46 H 1.08995 * 109.47162 * 179.97438 * 26 12 11 47 47 H 1.09003 * 109.46774 * 299.99772 * 26 12 11 48 48 H 1.08999 * 109.47019 * 299.99526 * 27 9 7 49 49 H 1.08997 * 109.46940 * 60.00039 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0025 12 6 0.6000 -5.0673 -1.2514 13 7 1.4441 -4.9885 -2.4511 14 6 0.7889 -5.6301 -3.5987 15 1 -0.2865 -5.4589 -3.5503 16 6 1.3460 -5.0490 -4.9036 17 6 0.4856 -5.5523 -6.0609 18 6 0.3394 -7.0504 -5.9999 19 6 -0.0824 -7.7055 -7.1506 20 6 -0.2443 -9.0743 -7.1600 21 6 0.0222 -9.8063 -6.0116 22 8 -0.1313 -11.1565 -6.0114 23 6 0.4403 -9.1533 -4.8650 24 6 0.6027 -7.7745 -4.8586 25 6 1.0723 -7.1307 -3.5802 26 6 -0.3942 -3.9043 -1.2502 27 6 0.3709 -2.5799 -1.2495 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5570 0.8896 30 1 2.8724 -3.6047 0.8878 31 1 2.8712 -3.6040 -0.8922 32 1 0.8538 -5.0455 0.8878 33 1 2.1884 -5.8156 -0.0029 34 1 0.0553 -6.0114 -1.2520 35 1 1.6857 -4.0317 -2.6611 36 1 1.3098 -3.9603 -4.8657 37 1 2.3762 -5.3775 -5.0414 38 1 -0.5006 -5.0920 -6.0021 39 1 0.9556 -5.2758 -7.0048 40 1 -0.2857 -7.1367 -8.0458 41 1 -0.5728 -9.5753 -8.0586 42 1 -1.0170 -11.4517 -5.7590 43 1 0.6462 -9.7213 -3.9697 44 1 0.5516 -7.5844 -2.7369 45 1 2.1444 -7.2926 -3.4690 46 1 -1.0209 -3.9611 -2.1401 47 1 -1.0205 -3.9627 -0.3599 48 1 -0.3374 -1.7514 -1.2490 49 1 0.9973 -2.5220 -2.1397 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329055.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:48 Heat of formation + Delta-G solvation = -49.459339 kcal Electronic energy + Delta-G solvation = -26639.073223 eV Core-core repulsion = 23143.153358 eV Total energy + Delta-G solvation = -3495.919865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.45384 -38.82772 -37.68218 -35.55788 -33.37851 -32.57376 -31.64848 -29.67230 -29.37822 -28.53049 -27.28605 -24.63417 -23.38906 -22.45528 -22.25161 -21.48791 -20.59283 -19.69018 -18.06544 -17.96260 -16.40163 -16.28943 -15.90849 -15.80237 -15.27337 -14.64102 -14.48257 -14.26803 -13.83878 -13.77965 -13.41798 -13.27633 -13.09619 -12.84245 -12.51245 -12.40079 -12.27503 -12.07204 -11.70792 -11.52309 -11.33050 -11.26817 -11.08952 -10.89481 -10.74131 -10.63342 -10.51970 -10.32865 -10.12005 -9.98050 -9.88414 -9.30230 -8.93758 -8.87406 -8.61639 -8.51790 -8.26732 -7.91301 -5.95818 -4.01625 1.05890 1.16291 3.30801 3.37935 3.40041 3.41514 3.97918 4.34266 4.45733 4.55294 4.73762 4.79303 4.97562 5.03176 5.08189 5.18262 5.33309 5.46849 5.49051 5.53390 5.55471 5.67015 5.71080 5.74546 5.80515 5.85689 5.88236 5.94213 6.08760 6.19883 6.23235 6.25472 6.30248 6.31186 6.46144 6.50978 6.53148 6.64875 6.68812 6.71907 6.84048 7.01754 7.21716 7.24456 7.42592 7.53210 7.54990 7.77874 7.87479 8.06290 8.18637 8.51326 9.03332 9.63063 11.09416 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.025973 B = 0.002743 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.776320 B =10204.334764 C =10774.294848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.887 3.113 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.106 4.106 11 C -0.103 4.103 12 C 0.093 3.907 13 N -0.680 5.680 14 C 0.089 3.911 15 H 0.046 0.954 16 C -0.122 4.122 17 C -0.078 4.078 18 C -0.083 4.083 19 C -0.105 4.105 20 C -0.152 4.152 21 C 0.098 3.902 22 O -0.501 6.501 23 C -0.146 4.146 24 C -0.050 4.050 25 C -0.070 4.070 26 C -0.148 4.148 27 C -0.106 4.106 28 H 0.258 0.742 29 H 0.022 0.978 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.353 0.647 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.388 0.612 43 H 0.126 0.874 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.038 0.962 47 H 0.056 0.944 48 H 0.090 0.910 49 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.700 -16.907 -12.447 21.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.144 4.144 11 C -0.141 4.141 12 C -0.017 4.017 13 N -0.314 5.314 14 C -0.021 4.021 15 H 0.064 0.936 16 C -0.159 4.159 17 C -0.115 4.115 18 C -0.083 4.083 19 C -0.123 4.123 20 C -0.170 4.170 21 C 0.054 3.946 22 O -0.311 6.311 23 C -0.164 4.164 24 C -0.051 4.051 25 C -0.108 4.108 26 C -0.187 4.187 27 C -0.144 4.144 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.177 0.823 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.243 0.757 43 H 0.144 0.856 44 H 0.090 0.910 45 H 0.105 0.895 46 H 0.056 0.944 47 H 0.075 0.925 48 H 0.109 0.891 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.874 -17.317 -12.443 21.406 hybrid contribution -0.863 1.449 -0.140 1.693 sum -2.737 -15.868 -12.583 20.435 Atomic orbital electron populations 1.69882 1.05836 1.26172 1.51242 1.24973 0.94813 0.98952 0.95343 0.86668 0.79951 0.83802 0.78004 1.20819 1.21379 1.19987 1.21264 0.92896 0.90800 1.49813 0.92819 1.18647 0.92664 0.91720 0.93953 1.21567 0.98560 0.94098 1.00175 1.21513 0.98200 0.98755 0.95635 1.21514 0.92689 0.96869 0.90598 1.60704 1.43627 1.24258 1.02845 1.21387 0.96757 0.93537 0.90453 0.93637 1.21736 0.99927 1.00701 0.93580 1.20463 1.00837 0.90794 0.99428 1.19726 0.99719 0.96004 0.92880 1.21043 0.99444 0.93837 0.97944 1.21293 1.03041 0.94236 0.98434 1.18350 1.00598 0.82605 0.93092 1.84826 1.36765 1.18152 1.91369 1.21432 1.02720 0.94190 0.98093 1.19625 0.97540 0.92575 0.95335 1.20520 1.02165 0.94976 0.93141 1.22249 0.98257 0.98028 1.00167 1.21570 0.99428 0.94822 0.98607 0.93197 0.95980 0.93972 0.92810 0.92908 0.93134 0.92363 0.82339 0.90974 0.90869 0.90538 0.90583 0.85790 0.85712 0.75691 0.85571 0.90984 0.89473 0.94365 0.92479 0.89148 0.95078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.17 11.32 55.43 0.63 -24.54 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.51 -13.75 8.56 -34.44 -0.29 -14.05 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.17 2.10 -91.77 -0.19 0.98 16 10 C -0.11 -2.17 4.90 -26.73 -0.13 -2.30 16 11 C -0.10 -1.78 5.64 -26.73 -0.15 -1.94 16 12 C 0.09 1.51 2.68 -67.71 -0.18 1.33 16 13 N -0.68 -10.32 5.58 -99.71 -0.56 -10.87 16 14 C 0.09 1.15 2.31 -67.68 -0.16 1.00 16 15 H 0.05 0.64 7.09 -51.93 -0.37 0.27 16 16 C -0.12 -1.42 5.37 -26.70 -0.14 -1.56 16 17 C -0.08 -0.79 5.67 -28.04 -0.16 -0.95 16 18 C -0.08 -0.91 5.74 -104.58 -0.60 -1.51 16 19 C -0.10 -1.03 9.60 -39.46 -0.38 -1.40 16 20 C -0.15 -1.49 9.99 -39.53 -0.40 -1.88 16 21 C 0.10 1.03 6.70 -39.32 -0.26 0.77 16 22 O -0.50 -4.66 13.51 -19.41 -0.26 -4.92 16 23 C -0.15 -1.61 9.55 -39.29 -0.38 -1.98 16 24 C -0.05 -0.58 5.74 -104.63 -0.60 -1.18 16 25 C -0.07 -0.84 5.12 -28.06 -0.14 -0.99 16 26 C -0.15 -2.73 5.50 -26.75 -0.15 -2.88 16 27 C -0.11 -2.37 4.72 -26.75 -0.13 -2.49 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.05 1.10 7.21 -51.93 -0.37 0.73 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.88 7.20 -51.93 -0.37 0.50 16 35 H 0.35 5.92 5.09 -39.29 -0.20 5.72 16 36 H 0.07 0.87 7.94 -51.93 -0.41 0.45 16 37 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 40 H 0.12 0.96 8.05 -52.49 -0.42 0.53 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.39 1.72 9.06 45.56 0.41 2.13 16 43 H 0.13 1.26 8.05 -52.49 -0.42 0.84 16 44 H 0.07 0.85 7.54 -51.93 -0.39 0.46 16 45 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.04 0.66 7.43 -51.93 -0.39 0.28 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 49 H 0.03 0.68 6.25 -51.93 -0.32 0.35 16 LS Contribution 370.78 15.07 5.59 5.59 Total: -1.00 -29.03 370.78 -11.50 -40.54 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -7.34 Total: 7.56 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: -4.53 Total: -29.50 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.07 Total: -35.41 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.26 Total: -4.92 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.03 -11.50 -40.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329055.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.924 kcal (2) G-P(sol) polarization free energy of solvation -29.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds