Wall clock time and date at job start Tue Mar 31 2020 11:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00103 * 2 1 4 4 H 1.48506 * 109.47387 * 269.99984 * 3 2 1 5 5 H 1.48505 * 109.47320 * 30.00193 * 3 2 1 6 6 H 1.48494 * 109.47415 * 149.99814 * 3 2 1 7 7 C 1.37878 * 119.99598 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99436 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00197 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47081 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47079 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47302 * 60.00194 * 11 10 9 13 13 N 1.46904 * 109.46715 * 59.99643 * 12 11 10 14 14 C 1.46907 * 110.99439 * 155.00013 * 13 12 11 15 15 H 1.08999 * 109.67904 * 35.53011 * 14 13 12 16 16 C 1.53325 * 109.70970 * 156.05977 * 14 13 12 17 17 C 1.52737 * 108.37729 * 189.64398 * 16 14 13 18 18 C 1.50646 * 110.59218 * 308.87621 * 17 16 14 19 19 C 1.38961 * 117.69250 * 197.55764 * 18 17 16 20 20 C 1.37837 * 120.62802 * 180.38575 * 19 18 17 21 21 C 1.38764 * 119.71025 * 359.70372 * 20 19 18 22 22 O 1.35896 * 120.17287 * 180.14964 * 21 20 19 23 23 C 1.38421 * 119.65156 * 0.39125 * 21 20 19 24 24 C 1.37706 * 122.54151 * 17.73554 * 18 17 16 25 25 C 1.50635 * 122.56586 * 359.36836 * 24 18 17 26 26 C 1.53004 * 109.47123 * 300.00154 * 12 11 10 27 27 C 1.53004 * 109.46959 * 60.00203 * 9 7 2 28 28 H 0.97007 * 119.99902 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47263 * 300.00439 * 9 7 2 30 30 H 1.09000 * 109.46557 * 60.00265 * 10 9 7 31 31 H 1.08997 * 109.47484 * 300.00369 * 10 9 7 32 32 H 1.09003 * 109.47267 * 300.00011 * 11 10 9 33 33 H 1.09004 * 109.46976 * 180.02562 * 11 10 9 34 34 H 1.08994 * 109.47120 * 179.97438 * 12 11 10 35 35 H 1.00894 * 111.00244 * 278.94889 * 13 12 11 36 36 H 1.08997 * 109.69038 * 309.36887 * 16 14 13 37 37 H 1.09005 * 109.68117 * 69.89054 * 16 14 13 38 38 H 1.08998 * 109.24751 * 69.16979 * 17 16 14 39 39 H 1.09002 * 109.24595 * 188.63323 * 17 16 14 40 40 H 1.07999 * 119.68915 * 0.35950 * 19 18 17 41 41 H 1.08001 * 120.14254 * 179.97438 * 20 19 18 42 42 H 0.96704 * 114.00007 * 270.24259 * 22 21 20 43 43 H 1.08002 * 119.74968 * 179.87637 * 23 21 20 44 44 H 1.08998 * 109.25558 * 137.99214 * 25 24 18 45 45 H 1.09000 * 109.25455 * 257.41990 * 25 24 18 46 46 H 1.08995 * 109.47162 * 179.97438 * 26 12 11 47 47 H 1.09003 * 109.46774 * 299.99772 * 26 12 11 48 48 H 1.08999 * 109.47019 * 299.99526 * 27 9 7 49 49 H 1.08997 * 109.46940 * 60.00039 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0025 12 6 0.6000 -5.0673 -1.2514 13 7 1.4441 -4.9885 -2.4511 14 6 0.7889 -5.6301 -3.5987 15 1 -0.2865 -5.4589 -3.5503 16 6 1.3460 -5.0490 -4.9036 17 6 0.4856 -5.5523 -6.0609 18 6 0.3394 -7.0504 -5.9999 19 6 -0.0824 -7.7055 -7.1506 20 6 -0.2443 -9.0743 -7.1600 21 6 0.0222 -9.8063 -6.0116 22 8 -0.1313 -11.1565 -6.0114 23 6 0.4403 -9.1533 -4.8650 24 6 0.6027 -7.7745 -4.8586 25 6 1.0723 -7.1307 -3.5802 26 6 -0.3942 -3.9043 -1.2502 27 6 0.3709 -2.5799 -1.2495 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5570 0.8896 30 1 2.8724 -3.6047 0.8878 31 1 2.8712 -3.6040 -0.8922 32 1 0.8538 -5.0455 0.8878 33 1 2.1884 -5.8156 -0.0029 34 1 0.0553 -6.0114 -1.2520 35 1 1.6857 -4.0317 -2.6611 36 1 1.3098 -3.9603 -4.8657 37 1 2.3762 -5.3775 -5.0414 38 1 -0.5006 -5.0920 -6.0021 39 1 0.9556 -5.2758 -7.0048 40 1 -0.2857 -7.1367 -8.0458 41 1 -0.5728 -9.5753 -8.0586 42 1 -1.0170 -11.4517 -5.7590 43 1 0.6462 -9.7213 -3.9697 44 1 0.5516 -7.5844 -2.7369 45 1 2.1444 -7.2926 -3.4690 46 1 -1.0209 -3.9611 -2.1401 47 1 -1.0205 -3.9627 -0.3599 48 1 -0.3374 -1.7514 -1.2490 49 1 0.9973 -2.5220 -2.1397 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329055.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:47 Heat of formation + Delta-G solvation = -65.364517 kcal Electronic energy + Delta-G solvation = -26639.762923 eV Core-core repulsion = 23143.153358 eV Total energy + Delta-G solvation = -3496.609565 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.29135 -40.09934 -38.64612 -36.64762 -34.99652 -33.53828 -32.99845 -31.26352 -30.78202 -29.42410 -28.44952 -26.49542 -24.32352 -23.33131 -23.21958 -22.96428 -22.28221 -20.56888 -19.53413 -18.79579 -18.36431 -17.32976 -16.91060 -16.63897 -16.56236 -16.17350 -15.52423 -15.37782 -15.12008 -15.07784 -14.61071 -14.32761 -14.16425 -14.04071 -13.91140 -13.57284 -13.43353 -13.35767 -13.06816 -12.96128 -12.82282 -12.61615 -12.47461 -12.23519 -12.05751 -11.88782 -11.81656 -11.65995 -11.61102 -11.38571 -11.26484 -11.04574 -10.64290 -10.49026 -10.29571 -9.70728 -9.29088 -9.18360 -8.04964 -6.18433 0.30314 0.39241 1.40496 1.41954 1.51536 2.44797 2.65931 3.16974 3.21179 3.37211 3.72940 3.85031 4.04319 4.04775 4.11148 4.17205 4.21384 4.23809 4.34175 4.37774 4.56361 4.64800 4.65800 4.70336 4.71152 4.85563 4.90762 4.92071 4.95190 4.97912 5.06245 5.07941 5.09324 5.11734 5.23259 5.28261 5.33021 5.39724 5.46997 5.47386 5.49542 5.54059 5.67236 5.73060 5.74895 5.95836 6.09457 6.23698 6.33605 6.46907 6.57295 6.87398 6.94993 7.49489 8.98200 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.025973 B = 0.002743 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.776320 B =10204.334764 C =10774.294848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.012 3.988 3 Si 0.948 3.052 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.530 4.530 8 H 0.049 0.951 9 C 0.046 3.954 10 C -0.097 4.097 11 C -0.098 4.098 12 C 0.102 3.898 13 N -0.679 5.679 14 C 0.090 3.910 15 H 0.039 0.961 16 C -0.119 4.119 17 C -0.073 4.073 18 C -0.096 4.096 19 C -0.105 4.105 20 C -0.155 4.155 21 C 0.093 3.907 22 O -0.511 6.511 23 C -0.158 4.158 24 C -0.063 4.063 25 C -0.062 4.062 26 C -0.139 4.139 27 C -0.094 4.094 28 H 0.258 0.742 29 H -0.014 1.014 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.344 0.656 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.408 0.592 43 H 0.130 0.870 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.050 0.950 47 H 0.047 0.953 48 H 0.053 0.947 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.499 -18.189 -14.016 23.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.774 3.226 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.568 4.568 8 H 0.067 0.933 9 C 0.028 3.972 10 C -0.135 4.135 11 C -0.135 4.135 12 C -0.008 4.008 13 N -0.312 5.312 14 C -0.020 4.020 15 H 0.057 0.943 16 C -0.157 4.157 17 C -0.110 4.110 18 C -0.096 4.096 19 C -0.123 4.123 20 C -0.174 4.174 21 C 0.049 3.951 22 O -0.324 6.324 23 C -0.176 4.176 24 C -0.064 4.064 25 C -0.099 4.099 26 C -0.178 4.178 27 C -0.133 4.133 28 H 0.067 0.933 29 H 0.005 0.995 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.165 0.835 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.164 0.836 41 H 0.161 0.839 42 H 0.267 0.733 43 H 0.148 0.852 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.071 0.929 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.681 -18.624 -14.012 23.367 hybrid contribution -0.945 1.805 0.343 2.066 sum -2.626 -16.819 -13.669 21.831 Atomic orbital electron populations 1.70028 1.07055 1.26795 1.51827 1.25704 0.95611 1.02151 0.95137 0.85708 0.78762 0.79887 0.78199 1.20095 1.21181 1.19536 1.21636 0.92928 0.92437 1.49788 0.93312 1.18618 0.93056 0.92342 0.93174 1.21411 0.97798 0.94440 0.99807 1.21469 0.98427 0.97357 0.96292 1.21425 0.92065 0.96592 0.90718 1.60717 1.43593 1.23550 1.03358 1.21432 0.96149 0.94190 0.90193 0.94312 1.21701 1.00134 1.00228 0.93614 1.20442 1.00747 0.90454 0.99389 1.19876 1.00178 0.96328 0.93194 1.21297 0.98610 0.94085 0.98289 1.21551 1.02577 0.94392 0.98854 1.18479 1.00322 0.83106 0.93186 1.84769 1.38681 1.17529 1.91462 1.21532 1.03238 0.94166 0.98706 1.19632 0.98504 0.92942 0.95335 1.20396 1.01798 0.94013 0.93738 1.22137 0.98431 0.96898 1.00310 1.21309 0.98545 0.95739 0.97687 0.93285 0.99537 0.94655 0.92778 0.92937 0.91108 0.90188 0.83458 0.91616 0.91058 0.90276 0.88943 0.83632 0.83930 0.73309 0.85184 0.90901 0.90087 0.93120 0.93397 0.92862 0.94942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.09 11.32 21.45 0.24 -52.85 16 2 C 0.01 0.67 5.30 84.65 0.45 1.12 16 3 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.53 -29.23 8.56 25.60 0.22 -29.01 16 8 H 0.05 2.67 7.74 -2.91 -0.02 2.64 16 9 C 0.05 2.30 2.10 -11.54 -0.02 2.28 16 10 C -0.10 -3.96 4.90 30.60 0.15 -3.81 16 11 C -0.10 -3.26 5.64 30.59 0.17 -3.09 16 12 C 0.10 3.17 2.68 44.91 0.12 3.29 16 13 N -0.68 -19.81 5.58 -469.36 -2.62 -22.42 16 14 C 0.09 2.22 2.31 44.93 0.10 2.32 16 15 H 0.04 1.02 7.09 -2.39 -0.02 1.01 16 16 C -0.12 -2.62 5.37 30.62 0.16 -2.46 16 17 C -0.07 -1.34 5.67 29.74 0.17 -1.17 16 18 C -0.10 -1.91 5.74 -19.83 -0.11 -2.02 16 19 C -0.10 -1.79 9.60 22.35 0.21 -1.58 16 20 C -0.16 -2.67 9.99 22.30 0.22 -2.45 16 21 C 0.09 1.79 6.70 22.44 0.15 1.94 16 22 O -0.51 -8.46 13.51 -92.38 -1.25 -9.71 16 23 C -0.16 -3.25 9.55 22.46 0.21 -3.03 16 24 C -0.06 -1.37 5.74 -19.87 -0.11 -1.48 16 25 C -0.06 -1.39 5.12 29.74 0.15 -1.24 16 26 C -0.14 -5.09 5.50 30.58 0.17 -4.92 16 27 C -0.09 -4.31 4.72 30.58 0.14 -4.16 16 28 H 0.26 14.28 8.31 -92.70 -0.77 13.51 16 29 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 30 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 2.19 7.21 -2.39 -0.02 2.18 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.08 2.22 7.20 -2.39 -0.02 2.20 16 35 H 0.34 11.30 5.09 -89.70 -0.46 10.84 16 36 H 0.07 1.53 7.94 -2.39 -0.02 1.51 16 37 H 0.07 1.59 8.10 -2.38 -0.02 1.57 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.09 1.39 8.12 -2.39 -0.02 1.37 16 40 H 0.15 1.78 8.05 -2.91 -0.02 1.75 16 41 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.41 2.75 9.06 -74.05 -0.67 2.08 16 43 H 0.13 2.45 8.05 -2.91 -0.02 2.43 16 44 H 0.07 1.60 7.54 -2.39 -0.02 1.58 16 45 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.05 1.72 7.43 -2.39 -0.02 1.71 16 47 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.05 2.83 6.07 -2.39 -0.01 2.82 16 49 H 0.03 1.44 6.25 -2.39 -0.01 1.42 16 Total: -1.00 -62.83 370.78 0.79 -62.05 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: -0.18 Total: 26.52 kcal Atomic # 6 Polarization: -52.02 SS G_CDS: 2.56 Total: -49.46 kcal Atomic # 7 Polarization: -72.90 SS G_CDS: -2.38 Total: -75.27 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -1.25 Total: -9.71 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -62.83 0.79 -62.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329055.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.319 kcal (2) G-P(sol) polarization free energy of solvation -62.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds