Wall clock time and date at job start Tue Mar 31 2020 11:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99398 * 2 1 4 4 H 1.48496 * 109.47366 * 270.00081 * 3 2 1 5 5 H 1.48498 * 109.47302 * 30.00455 * 3 2 1 6 6 H 1.48512 * 109.46787 * 149.99909 * 3 2 1 7 7 C 1.37869 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00372 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99914 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47173 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.47047 * 300.00128 * 11 10 9 13 13 N 1.46901 * 109.46951 * 180.02562 * 12 11 10 14 14 C 1.47014 * 111.00095 * 306.18216 * 13 12 11 15 15 C 1.53095 * 109.25990 * 182.39431 * 14 13 12 16 16 O 1.43019 * 109.25642 * 303.15273 * 15 14 13 17 17 C 1.43011 * 113.74044 * 58.67057 * 16 15 14 18 18 C 1.47012 * 110.99981 * 69.81559 * 13 12 11 19 19 H 1.08999 * 109.51087 * 297.54218 * 18 13 12 20 20 C 1.50705 * 109.50465 * 57.67521 * 18 13 12 21 21 C 1.38232 * 119.99916 * 46.02648 * 20 18 13 22 22 C 1.38243 * 119.99619 * 179.80961 * 21 20 18 23 23 C 1.38232 * 119.99825 * 0.39939 * 22 21 20 24 24 C 1.38232 * 120.00404 * 359.84970 * 23 22 21 25 25 C 1.38235 * 120.00003 * 359.96403 * 24 23 22 26 26 C 1.52995 * 109.46958 * 59.99884 * 12 11 10 27 27 C 1.52996 * 109.47096 * 299.99720 * 9 7 2 28 28 H 0.96991 * 120.00575 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47401 * 59.99954 * 9 7 2 30 30 H 1.09003 * 109.46982 * 59.99723 * 10 9 7 31 31 H 1.08999 * 109.46897 * 300.00174 * 10 9 7 32 32 H 1.08997 * 109.47097 * 180.02562 * 11 10 9 33 33 H 1.09003 * 109.47292 * 60.00037 * 11 10 9 34 34 H 1.08993 * 109.46819 * 299.99559 * 12 11 10 35 35 H 1.09000 * 109.50634 * 302.33090 * 14 13 12 36 36 H 1.09000 * 109.50535 * 62.45643 * 14 13 12 37 37 H 1.09003 * 109.50842 * 183.21934 * 15 14 13 38 38 H 1.08993 * 109.50762 * 63.08565 * 15 14 13 39 39 H 1.09003 * 109.50781 * 181.39670 * 17 16 15 40 40 H 1.08999 * 109.54380 * 61.28668 * 17 16 15 41 41 H 1.07998 * 120.00505 * 359.97438 * 21 20 18 42 42 H 1.07997 * 119.99656 * 180.23149 * 22 21 20 43 43 H 1.08006 * 119.99789 * 179.83447 * 23 22 21 44 44 H 1.07994 * 120.00016 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.00200 * 179.97438 * 25 24 23 46 46 H 1.09003 * 109.47100 * 60.00264 * 26 12 11 47 47 H 1.09001 * 109.47090 * 179.97438 * 26 12 11 48 48 H 1.08999 * 109.47422 * 299.99918 * 27 9 7 49 49 H 1.09006 * 109.46794 * 60.00444 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2456 -3.6620 -0.0018 11 6 1.4807 -4.9870 -0.0012 12 6 0.6024 -5.0683 1.2491 13 7 -0.1315 -6.3409 1.2500 14 6 -0.8762 -6.5205 -0.0048 15 6 -1.6718 -7.8267 0.0627 16 8 -0.7764 -8.9116 0.3210 17 6 -0.0352 -8.7696 1.5358 18 6 0.7770 -7.4729 1.4831 19 1 1.5025 -7.5305 0.6717 20 6 1.4987 -7.2777 2.7917 21 6 0.7958 -6.8921 3.9177 22 6 1.4572 -6.7168 5.1190 23 6 2.8227 -6.9192 5.1920 24 6 3.5263 -7.2999 4.0647 25 6 2.8644 -7.4788 2.8644 26 6 -0.3918 -3.9055 1.2503 27 6 0.3722 -2.5805 1.2490 28 1 -0.4850 0.8399 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 2.8730 -3.6046 0.8877 31 1 2.8715 -3.6038 -0.8923 32 1 2.1891 -5.8154 -0.0016 33 1 0.8530 -5.0447 -0.8905 34 1 1.2301 -5.0107 2.1383 35 1 -1.5610 -5.6840 -0.1446 36 1 -0.1771 -6.5628 -0.8400 37 1 -2.1803 -7.9927 -0.8871 38 1 -2.4078 -7.7636 0.8641 39 1 0.6400 -9.6175 1.6514 40 1 -0.7231 -8.7343 2.3806 41 1 -0.2704 -6.7302 3.8598 42 1 0.9075 -6.4192 5.9996 43 1 3.3398 -6.7797 6.1299 44 1 4.5932 -7.4576 4.1218 45 1 3.4142 -7.7758 1.9836 46 1 -1.0195 -3.9632 0.3610 47 1 -1.0178 -3.9636 2.1407 48 1 0.9992 -2.5229 2.1388 49 1 -0.3363 -1.7520 1.2495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173332303.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:34 Heat of formation + Delta-G solvation = -27.233323 kcal Electronic energy + Delta-G solvation = -27831.272138 eV Core-core repulsion = 24336.316065 eV Total energy + Delta-G solvation = -3494.956073 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.51778 -38.62392 -37.64691 -34.99272 -32.89286 -32.08625 -30.86153 -29.86002 -29.50863 -28.83747 -26.40739 -24.35518 -23.98334 -22.73292 -21.81097 -21.68047 -20.76879 -19.49115 -18.42561 -17.00174 -16.37368 -16.23085 -16.16835 -15.48888 -15.23715 -14.71685 -14.62817 -14.32581 -14.07477 -13.86264 -13.50564 -13.29689 -13.20978 -12.80191 -12.58804 -12.53322 -12.20379 -11.79631 -11.69013 -11.47380 -11.27539 -11.06437 -11.01160 -10.97293 -10.76926 -10.61970 -10.33530 -10.29071 -10.09447 -9.89028 -9.62099 -9.35352 -8.90428 -8.85447 -8.71664 -8.61988 -8.26905 -7.99816 -5.95590 -4.01402 1.35639 1.46138 3.31270 3.38129 3.41494 3.73351 3.82016 4.00016 4.45966 4.71333 4.86981 4.94810 5.03877 5.10065 5.13969 5.19281 5.26692 5.31848 5.34334 5.45690 5.53035 5.58129 5.58825 5.63877 5.75160 5.85973 5.93357 5.97721 6.00742 6.10005 6.14499 6.28263 6.40828 6.48305 6.51823 6.53526 6.56392 6.66612 6.74040 6.79825 6.88886 7.01842 7.07537 7.10926 7.27303 7.29669 7.35387 7.56303 7.78273 8.04966 8.19242 8.50663 9.02534 9.63085 11.09994 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013949 B = 0.004206 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.810693 B = 6656.101515 C = 7873.136922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.887 3.113 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.052 0.948 9 C 0.050 3.950 10 C -0.103 4.103 11 C -0.144 4.144 12 C 0.089 3.911 13 N -0.524 5.524 14 C 0.012 3.988 15 C 0.063 3.937 16 O -0.387 6.387 17 C 0.076 3.924 18 C 0.086 3.914 19 H 0.058 0.942 20 C -0.074 4.074 21 C -0.089 4.089 22 C -0.124 4.124 23 C -0.121 4.121 24 C -0.122 4.122 25 C -0.112 4.112 26 C -0.104 4.104 27 C -0.107 4.107 28 H 0.259 0.741 29 H 0.022 0.978 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.048 0.952 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.128 0.872 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.051 0.949 47 H 0.048 0.952 48 H 0.032 0.968 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.206 -17.490 6.435 18.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.071 0.929 9 C 0.032 3.968 10 C -0.141 4.141 11 C -0.183 4.183 12 C -0.018 4.018 13 N -0.248 5.248 14 C -0.116 4.116 15 C -0.014 4.014 16 O -0.305 6.305 17 C -0.002 4.002 18 C -0.022 4.022 19 H 0.076 0.924 20 C -0.074 4.074 21 C -0.107 4.107 22 C -0.142 4.142 23 C -0.140 4.140 24 C -0.140 4.140 25 C -0.131 4.131 26 C -0.142 4.142 27 C -0.146 4.146 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.066 0.934 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.112 0.888 40 H 0.077 0.923 41 H 0.146 0.854 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.051 0.949 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.699 -17.521 6.695 18.769 hybrid contribution 1.164 1.305 -0.510 1.822 sum 0.464 -16.215 6.185 17.361 Atomic orbital electron populations 1.69870 1.05811 1.26238 1.51066 1.24949 0.94819 0.98911 0.95243 0.86669 0.79942 0.83797 0.78027 1.20794 1.21274 1.20011 1.21230 0.92828 0.90823 1.50112 0.92937 1.18637 0.92558 0.91391 0.94228 1.21548 0.98569 0.94071 0.99892 1.22166 0.98769 0.98710 0.98633 1.21829 0.94551 0.87564 0.97850 1.62589 1.26607 1.01870 1.33686 1.22858 0.98273 0.98757 0.91691 1.22718 0.91605 0.85596 1.01485 1.87964 1.56651 1.44233 1.41656 1.22656 0.94285 0.95980 0.87239 1.21190 0.94113 0.92498 0.94448 0.92426 1.19575 0.93354 0.99973 0.94538 1.21045 1.00599 0.97404 0.91668 1.21171 0.94650 1.00456 0.97922 1.21133 0.94524 0.99898 0.98399 1.21055 0.99664 1.00407 0.92911 1.21030 0.93763 1.00410 0.97900 1.21630 0.97183 0.95030 1.00308 1.21584 0.99580 0.94769 0.98625 0.93126 0.95944 0.93573 0.93749 0.94062 0.92442 0.90103 0.88886 0.93372 0.88680 0.92426 0.88846 0.92281 0.85380 0.86224 0.86409 0.86293 0.86415 0.93076 0.93318 0.94938 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.34 11.32 55.43 0.63 -24.71 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.08 8.56 -34.44 -0.29 -14.38 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 9 C 0.05 1.24 2.10 -91.77 -0.19 1.05 16 10 C -0.10 -2.16 5.14 -26.73 -0.14 -2.30 16 11 C -0.14 -2.55 4.44 -26.73 -0.12 -2.67 16 12 C 0.09 1.51 1.92 -67.71 -0.13 1.38 16 13 N -0.52 -7.46 4.00 -219.79 -0.88 -8.34 16 14 C 0.01 0.16 4.80 -3.71 -0.02 0.15 16 15 C 0.06 0.73 7.01 37.21 0.26 0.99 16 16 O -0.39 -5.00 10.83 -35.23 -0.38 -5.39 16 17 C 0.08 0.88 6.24 37.21 0.23 1.12 16 18 C 0.09 1.12 1.92 -68.75 -0.13 0.99 16 19 H 0.06 0.81 6.52 -51.93 -0.34 0.47 16 20 C -0.07 -0.94 3.44 -104.62 -0.36 -1.30 16 21 C -0.09 -1.12 8.56 -39.58 -0.34 -1.46 16 22 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 23 C -0.12 -1.34 10.05 -39.59 -0.40 -1.74 16 24 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 25 C -0.11 -1.36 9.67 -39.58 -0.38 -1.75 16 26 C -0.10 -1.97 5.13 -26.76 -0.14 -2.11 16 27 C -0.11 -2.49 4.98 -26.76 -0.13 -2.62 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.04 0.68 6.73 -51.93 -0.35 0.33 16 33 H 0.06 1.03 6.38 -51.93 -0.33 0.70 16 34 H 0.08 1.47 6.31 -51.93 -0.33 1.14 16 35 H 0.09 1.29 6.38 -51.93 -0.33 0.95 16 36 H 0.05 0.69 6.37 -51.93 -0.33 0.36 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.67 8.01 -51.93 -0.42 0.25 16 41 H 0.13 1.61 7.91 -52.49 -0.42 1.20 16 42 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 43 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 44 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.12 1.29 7.99 -52.49 -0.42 0.87 16 46 H 0.05 0.98 6.51 -51.93 -0.34 0.64 16 47 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 LS Contribution 366.90 15.07 5.53 5.53 Total: -1.00 -28.62 366.90 -11.40 -40.02 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -8.11 Total: 3.19 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: -3.17 Total: -26.65 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: -0.25 Total: -33.05 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.38 Total: -5.39 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.62 -11.40 -40.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332303.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.786 kcal (2) G-P(sol) polarization free energy of solvation -28.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds