Wall clock time and date at job start Tue Mar 31 2020 11:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99398 * 2 1 4 4 H 1.48496 * 109.47366 * 270.00081 * 3 2 1 5 5 H 1.48498 * 109.47302 * 30.00455 * 3 2 1 6 6 H 1.48512 * 109.46787 * 149.99909 * 3 2 1 7 7 C 1.37869 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00372 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99914 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47173 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.47047 * 300.00128 * 11 10 9 13 13 N 1.46901 * 109.46951 * 180.02562 * 12 11 10 14 14 C 1.47014 * 111.00095 * 306.18216 * 13 12 11 15 15 C 1.53095 * 109.25990 * 182.39431 * 14 13 12 16 16 O 1.43019 * 109.25642 * 303.15273 * 15 14 13 17 17 C 1.43011 * 113.74044 * 58.67057 * 16 15 14 18 18 C 1.47012 * 110.99981 * 69.81559 * 13 12 11 19 19 H 1.08999 * 109.51087 * 297.54218 * 18 13 12 20 20 C 1.50705 * 109.50465 * 57.67521 * 18 13 12 21 21 C 1.38232 * 119.99916 * 46.02648 * 20 18 13 22 22 C 1.38243 * 119.99619 * 179.80961 * 21 20 18 23 23 C 1.38232 * 119.99825 * 0.39939 * 22 21 20 24 24 C 1.38232 * 120.00404 * 359.84970 * 23 22 21 25 25 C 1.38235 * 120.00003 * 359.96403 * 24 23 22 26 26 C 1.52995 * 109.46958 * 59.99884 * 12 11 10 27 27 C 1.52996 * 109.47096 * 299.99720 * 9 7 2 28 28 H 0.96991 * 120.00575 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47401 * 59.99954 * 9 7 2 30 30 H 1.09003 * 109.46982 * 59.99723 * 10 9 7 31 31 H 1.08999 * 109.46897 * 300.00174 * 10 9 7 32 32 H 1.08997 * 109.47097 * 180.02562 * 11 10 9 33 33 H 1.09003 * 109.47292 * 60.00037 * 11 10 9 34 34 H 1.08993 * 109.46819 * 299.99559 * 12 11 10 35 35 H 1.09000 * 109.50634 * 302.33090 * 14 13 12 36 36 H 1.09000 * 109.50535 * 62.45643 * 14 13 12 37 37 H 1.09003 * 109.50842 * 183.21934 * 15 14 13 38 38 H 1.08993 * 109.50762 * 63.08565 * 15 14 13 39 39 H 1.09003 * 109.50781 * 181.39670 * 17 16 15 40 40 H 1.08999 * 109.54380 * 61.28668 * 17 16 15 41 41 H 1.07998 * 120.00505 * 359.97438 * 21 20 18 42 42 H 1.07997 * 119.99656 * 180.23149 * 22 21 20 43 43 H 1.08006 * 119.99789 * 179.83447 * 23 22 21 44 44 H 1.07994 * 120.00016 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.00200 * 179.97438 * 25 24 23 46 46 H 1.09003 * 109.47100 * 60.00264 * 26 12 11 47 47 H 1.09001 * 109.47090 * 179.97438 * 26 12 11 48 48 H 1.08999 * 109.47422 * 299.99918 * 27 9 7 49 49 H 1.09006 * 109.46794 * 60.00444 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2456 -3.6620 -0.0018 11 6 1.4807 -4.9870 -0.0012 12 6 0.6024 -5.0683 1.2491 13 7 -0.1315 -6.3409 1.2500 14 6 -0.8762 -6.5205 -0.0048 15 6 -1.6718 -7.8267 0.0627 16 8 -0.7764 -8.9116 0.3210 17 6 -0.0352 -8.7696 1.5358 18 6 0.7770 -7.4729 1.4831 19 1 1.5025 -7.5305 0.6717 20 6 1.4987 -7.2777 2.7917 21 6 0.7958 -6.8921 3.9177 22 6 1.4572 -6.7168 5.1190 23 6 2.8227 -6.9192 5.1920 24 6 3.5263 -7.2999 4.0647 25 6 2.8644 -7.4788 2.8644 26 6 -0.3918 -3.9055 1.2503 27 6 0.3722 -2.5805 1.2490 28 1 -0.4850 0.8399 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 2.8730 -3.6046 0.8877 31 1 2.8715 -3.6038 -0.8923 32 1 2.1891 -5.8154 -0.0016 33 1 0.8530 -5.0447 -0.8905 34 1 1.2301 -5.0107 2.1383 35 1 -1.5610 -5.6840 -0.1446 36 1 -0.1771 -6.5628 -0.8400 37 1 -2.1803 -7.9927 -0.8871 38 1 -2.4078 -7.7636 0.8641 39 1 0.6400 -9.6175 1.6514 40 1 -0.7231 -8.7343 2.3806 41 1 -0.2704 -6.7302 3.8598 42 1 0.9075 -6.4192 5.9996 43 1 3.3398 -6.7797 6.1299 44 1 4.5932 -7.4576 4.1218 45 1 3.4142 -7.7758 1.9836 46 1 -1.0195 -3.9632 0.3610 47 1 -1.0178 -3.9636 2.1407 48 1 0.9992 -2.5229 2.1388 49 1 -0.3363 -1.7520 1.2495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173332303.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:33 Heat of formation + Delta-G solvation = -41.641373 kcal Electronic energy + Delta-G solvation = -27831.896918 eV Core-core repulsion = 24336.316065 eV Total energy + Delta-G solvation = -3495.580852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.62195 -39.60331 -39.02032 -36.41677 -34.41898 -33.48565 -31.74936 -31.50248 -30.86577 -30.04346 -27.83177 -25.81509 -25.27996 -23.76159 -23.27522 -22.67508 -22.26208 -20.87312 -19.91287 -18.41058 -17.97327 -17.27536 -17.21818 -16.63103 -16.48048 -16.18450 -15.80194 -15.46967 -15.21387 -15.04928 -14.94304 -14.74090 -14.47419 -14.14350 -14.03941 -13.59083 -13.51035 -13.38339 -12.94619 -12.91030 -12.81798 -12.57524 -12.47404 -12.35881 -12.08686 -12.02986 -11.86472 -11.70828 -11.53062 -11.44633 -11.14987 -10.83014 -10.69935 -10.59170 -10.34967 -9.74591 -9.54196 -9.23435 -8.07657 -6.21453 0.46451 0.57521 1.39447 1.40495 1.50329 2.42868 2.71040 2.90859 2.97902 3.18741 3.72350 3.82356 3.94548 3.99984 4.03545 4.16708 4.22897 4.24081 4.30999 4.33321 4.34784 4.41364 4.56776 4.63329 4.67062 4.70035 4.73813 4.77313 4.79862 4.85322 4.87218 4.94866 5.03828 5.04748 5.12963 5.16167 5.23599 5.30047 5.34284 5.43449 5.60845 5.61982 5.67633 5.68662 5.71842 6.01806 6.03673 6.07553 6.13929 6.21321 6.23392 6.41797 6.90306 7.46373 8.96231 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013949 B = 0.004206 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.810693 B = 6656.101515 C = 7873.136922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.949 3.051 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.536 4.536 8 H 0.047 0.953 9 C 0.049 3.951 10 C -0.095 4.095 11 C -0.134 4.134 12 C 0.106 3.894 13 N -0.520 5.520 14 C 0.010 3.990 15 C 0.067 3.933 16 O -0.398 6.398 17 C 0.078 3.922 18 C 0.090 3.910 19 H 0.049 0.951 20 C -0.085 4.085 21 C -0.101 4.101 22 C -0.132 4.132 23 C -0.126 4.126 24 C -0.128 4.128 25 C -0.125 4.125 26 C -0.093 4.093 27 C -0.097 4.097 28 H 0.260 0.740 29 H -0.008 1.008 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.039 0.961 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.109 0.891 40 H 0.064 0.936 41 H 0.124 0.876 42 H 0.135 0.865 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.126 0.874 46 H 0.048 0.952 47 H 0.057 0.943 48 H 0.022 0.978 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.394 -18.730 7.212 20.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.775 3.225 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.574 4.574 8 H 0.065 0.935 9 C 0.031 3.969 10 C -0.133 4.133 11 C -0.172 4.172 12 C -0.002 4.002 13 N -0.243 5.243 14 C -0.117 4.117 15 C -0.010 4.010 16 O -0.316 6.316 17 C 0.001 3.999 18 C -0.018 4.018 19 H 0.067 0.933 20 C -0.085 4.085 21 C -0.120 4.120 22 C -0.150 4.150 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.143 4.143 26 C -0.130 4.130 27 C -0.136 4.136 28 H 0.069 0.931 29 H 0.010 0.990 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.058 0.942 37 H 0.133 0.867 38 H 0.083 0.917 39 H 0.127 0.873 40 H 0.082 0.918 41 H 0.142 0.858 42 H 0.153 0.847 43 H 0.158 0.842 44 H 0.157 0.843 45 H 0.144 0.856 46 H 0.066 0.934 47 H 0.076 0.924 48 H 0.041 0.959 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.099 -18.777 7.471 20.209 hybrid contribution 0.987 1.696 -0.741 2.097 sum 0.888 -17.081 6.730 18.381 Atomic orbital electron populations 1.70005 1.07027 1.26994 1.51408 1.25690 0.95655 1.02146 0.94882 0.85695 0.78815 0.79798 0.78188 1.20218 1.20770 1.19486 1.21597 0.92864 0.92481 1.50452 0.93466 1.18589 0.92924 0.92031 0.93391 1.21397 0.97862 0.94493 0.99531 1.22059 0.98852 0.97238 0.99094 1.21487 0.93624 0.88243 0.96896 1.62532 1.26470 1.01184 1.34142 1.22913 0.98105 0.99857 0.90868 1.22780 0.91177 0.84113 1.02895 1.87957 1.56929 1.44566 1.42161 1.22719 0.94403 0.95712 0.87017 1.21204 0.93835 0.92353 0.94410 0.93296 1.19597 0.93756 1.00822 0.94364 1.21100 1.00544 0.98117 0.92219 1.21432 0.95218 1.00161 0.98159 1.21459 0.94470 0.99114 0.99355 1.21363 1.00795 0.99758 0.92633 1.21227 0.93680 1.00671 0.98739 1.21446 0.97219 0.93791 1.00591 1.21351 0.98722 0.96101 0.97413 0.93085 0.99019 0.93913 0.94047 0.92292 0.92644 0.90960 0.89462 0.94249 0.86721 0.91663 0.87293 0.91813 0.85825 0.84682 0.84228 0.84322 0.85636 0.93363 0.92384 0.95921 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.21 11.32 21.45 0.24 -52.97 16 2 C 0.01 0.83 5.30 84.65 0.45 1.28 16 3 Si 0.95 44.15 29.54 68.60 2.03 46.18 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.54 -30.14 8.56 25.60 0.22 -29.93 16 8 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 9 C 0.05 2.49 2.10 -11.54 -0.02 2.47 16 10 C -0.09 -4.01 5.14 30.60 0.16 -3.86 16 11 C -0.13 -4.67 4.44 30.60 0.14 -4.53 16 12 C 0.11 3.50 1.92 44.92 0.09 3.59 16 13 N -0.52 -14.24 4.00 -849.28 -3.40 -17.63 16 14 C 0.01 0.27 4.80 86.31 0.41 0.68 16 15 C 0.07 1.42 7.01 72.01 0.50 1.93 16 16 O -0.40 -9.45 10.83 -148.98 -1.61 -11.06 16 17 C 0.08 1.68 6.24 72.02 0.45 2.13 16 18 C 0.09 2.21 1.92 44.18 0.09 2.30 16 19 H 0.05 1.29 6.52 -2.39 -0.02 1.28 16 20 C -0.08 -2.05 3.44 -19.86 -0.07 -2.11 16 21 C -0.10 -2.43 8.56 22.27 0.19 -2.23 16 22 C -0.13 -2.82 10.05 22.27 0.22 -2.60 16 23 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 24 C -0.13 -2.60 10.05 22.27 0.22 -2.37 16 25 C -0.12 -2.81 9.67 22.27 0.22 -2.60 16 26 C -0.09 -3.55 5.13 30.57 0.16 -3.39 16 27 C -0.10 -4.65 4.98 30.58 0.15 -4.50 16 28 H 0.26 14.40 8.31 -92.72 -0.77 13.63 16 29 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 30 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 1.87 6.73 -2.39 -0.02 1.86 16 33 H 0.05 1.97 6.38 -2.39 -0.02 1.96 16 34 H 0.07 2.58 6.31 -2.39 -0.02 2.56 16 35 H 0.09 2.35 6.38 -2.39 -0.02 2.34 16 36 H 0.04 1.09 6.37 -2.39 -0.02 1.08 16 37 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.06 1.32 8.01 -2.39 -0.02 1.30 16 41 H 0.12 2.99 7.91 -2.91 -0.02 2.97 16 42 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 43 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 44 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 45 H 0.13 2.54 7.99 -2.91 -0.02 2.52 16 46 H 0.05 1.87 6.51 -2.39 -0.02 1.86 16 47 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.06 3.28 6.07 -2.38 -0.01 3.27 16 Total: -1.00 -61.81 366.90 1.97 -59.84 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.91 Total: 21.67 kcal Atomic # 6 Polarization: -49.82 SS G_CDS: 3.79 Total: -46.02 kcal Atomic # 7 Polarization: -67.45 SS G_CDS: -3.15 Total: -70.61 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -1.61 Total: -11.06 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -61.81 1.97 -59.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332303.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.198 kcal (2) G-P(sol) polarization free energy of solvation -61.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds