Wall clock time and date at job start Tue Mar 31 2020 11:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.52999 * 109.47299 * 300.00060 * 9 7 2 11 11 C 1.53008 * 109.46901 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47448 * 59.99849 * 11 10 9 13 13 N 1.46901 * 109.47507 * 180.02562 * 12 11 10 14 14 C 1.46898 * 110.99649 * 275.00089 * 13 12 11 15 15 C 1.53002 * 109.47121 * 179.97438 * 14 13 12 16 16 H 1.08997 * 109.67777 * 59.47915 * 15 14 13 17 17 C 1.53398 * 109.68582 * 180.02562 * 15 14 13 18 18 C 1.53076 * 108.30236 * 184.43305 * 17 15 14 19 19 C 1.50769 * 109.67639 * 311.79009 * 18 17 15 20 20 C 1.38505 * 118.76658 * 197.82426 * 19 18 17 21 21 C 1.38106 * 120.32143 * 180.15861 * 20 19 18 22 22 C 1.38292 * 119.98170 * 0.02562 * 21 20 19 23 23 C 1.37967 * 119.95695 * 359.92240 * 22 21 20 24 24 C 1.38377 * 121.40760 * 17.84341 * 19 18 17 25 25 O 1.35842 * 121.80043 * 359.48425 * 24 19 18 26 26 C 1.53005 * 109.47190 * 300.00310 * 12 11 10 27 27 C 1.52994 * 109.47246 * 59.99659 * 26 12 11 28 28 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 30 30 H 1.08993 * 109.47037 * 300.00146 * 10 9 7 31 31 H 1.08997 * 109.47084 * 60.00847 * 10 9 7 32 32 H 1.09003 * 109.46610 * 299.99593 * 11 10 9 33 33 H 1.09001 * 109.46967 * 180.02562 * 11 10 9 34 34 H 1.09006 * 109.46920 * 59.99681 * 12 11 10 35 35 H 1.00902 * 110.99878 * 38.95462 * 13 12 11 36 36 H 1.08996 * 109.47322 * 299.99496 * 14 13 12 37 37 H 1.09003 * 109.47036 * 59.99880 * 14 13 12 38 38 H 1.09005 * 109.69788 * 304.13091 * 17 15 14 39 39 H 1.08999 * 109.70190 * 64.72821 * 17 15 14 40 40 H 1.09000 * 109.43752 * 71.84985 * 18 17 15 41 41 H 1.08996 * 109.43756 * 191.76894 * 18 17 15 42 42 H 1.08010 * 119.84097 * 0.14088 * 20 19 18 43 43 H 1.07992 * 120.00960 * 180.02562 * 21 20 19 44 44 H 1.07993 * 120.02116 * 179.97438 * 22 21 20 45 45 H 1.07999 * 119.89466 * 179.97438 * 23 22 21 46 46 H 1.09001 * 109.47064 * 299.99762 * 26 12 11 47 47 H 1.09006 * 109.47228 * 180.02562 * 26 12 11 48 48 H 1.08998 * 109.47353 * 180.02562 * 27 26 12 49 49 H 1.09006 * 109.47395 * 60.00303 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 0.3766 -2.5777 1.2583 11 6 -0.3880 -3.9030 1.2644 12 6 0.6065 -5.0656 1.2628 13 7 -0.1275 -6.3381 1.2680 14 6 -0.4888 -6.7316 2.6364 15 6 -1.2508 -8.0580 2.6012 16 1 -0.6263 -8.8281 2.1484 17 6 -1.6312 -8.4734 4.0280 18 6 -2.2912 -9.8532 3.9671 19 6 -3.3447 -9.8649 2.8886 20 6 -4.3053 -10.8625 2.9059 21 6 -5.2832 -10.9057 1.9317 22 6 -5.3059 -9.9500 0.9324 23 6 -4.3523 -8.9532 0.9106 24 6 -3.3669 -8.9052 1.8919 25 8 -2.4507 -7.9035 1.8421 26 6 1.4810 -4.9870 0.0097 27 6 2.2456 -3.6618 0.0036 28 1 -0.4850 0.8401 0.0004 29 1 0.6206 -2.5586 -0.8820 30 1 1.0070 -2.5182 2.1455 31 1 -0.3317 -1.7493 1.2596 32 1 -1.0183 -3.9628 0.3771 33 1 -1.0112 -3.9588 2.1569 34 1 1.2370 -5.0057 2.1500 35 1 -0.9450 -6.2863 0.6788 36 1 0.4165 -6.8481 3.2320 37 1 -1.1200 -5.9622 3.0811 38 1 -0.7357 -8.5216 4.6477 39 1 -2.3303 -7.7499 4.4473 40 1 -1.5360 -10.6071 3.7446 41 1 -2.7544 -10.0764 4.9282 42 1 -4.2893 -11.6105 3.6849 43 1 -6.0300 -11.6856 1.9502 44 1 -6.0701 -9.9834 0.1700 45 1 -4.3707 -8.2076 0.1295 46 1 0.8507 -5.0469 -0.8775 47 1 2.1893 -5.8156 0.0083 48 1 2.8682 -3.6056 -0.8893 49 1 2.8760 -3.6019 0.8909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173334400.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:05 Heat of formation + Delta-G solvation = -44.340467 kcal Electronic energy + Delta-G solvation = -26104.419388 eV Core-core repulsion = 22608.721494 eV Total energy + Delta-G solvation = -3495.697894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.88163 -38.38784 -37.62797 -35.04078 -34.37227 -32.48025 -30.98584 -30.36972 -29.62380 -28.65425 -26.57636 -24.40231 -23.68476 -22.69189 -22.37849 -21.48644 -20.56529 -20.01073 -18.77546 -18.02900 -16.80799 -16.28775 -16.08895 -15.30586 -15.06958 -14.72593 -14.62410 -14.42711 -14.20741 -13.94842 -13.49447 -13.31463 -13.28688 -12.99785 -12.66611 -12.55446 -12.26909 -12.10802 -11.87543 -11.67334 -11.56426 -11.30459 -11.15494 -10.98237 -10.85636 -10.73301 -10.59012 -10.40484 -10.19998 -10.10068 -9.88319 -9.34522 -9.00276 -8.96556 -8.63674 -8.30296 -8.29112 -7.95952 -5.93865 -3.99834 1.10620 1.25030 3.08396 3.32359 3.39068 3.42309 3.55560 4.13423 4.41266 4.45416 4.47257 4.57953 4.81711 4.87272 4.93791 5.02773 5.12870 5.26572 5.28589 5.33695 5.35753 5.40630 5.52050 5.53030 5.66114 5.71063 5.79075 5.81092 5.90725 5.99645 6.11131 6.22679 6.25724 6.32407 6.33937 6.39261 6.46074 6.60843 6.70064 6.71287 6.86132 6.96967 7.16710 7.25797 7.34661 7.41642 7.56914 7.69887 7.79641 8.07627 8.20269 8.52569 9.04785 9.64531 11.11583 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.026734 B = 0.002352 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.098332 B =11903.900124 C =12283.551331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.105 4.105 11 C -0.142 4.142 12 C 0.090 3.910 13 N -0.688 5.688 14 C 0.068 3.932 15 C 0.095 3.905 16 H 0.080 0.920 17 C -0.155 4.155 18 C -0.076 4.076 19 C -0.165 4.165 20 C -0.086 4.086 21 C -0.158 4.158 22 C -0.089 4.089 23 C -0.150 4.150 24 C 0.141 3.859 25 O -0.309 6.309 26 C -0.100 4.100 27 C -0.109 4.109 28 H 0.258 0.742 29 H 0.024 0.976 30 H 0.031 0.969 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.037 0.963 34 H 0.069 0.931 35 H 0.346 0.654 36 H 0.088 0.912 37 H 0.040 0.960 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.127 0.873 45 H 0.131 0.869 46 H 0.053 0.947 47 H 0.050 0.950 48 H 0.047 0.953 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.158 -22.332 7.494 24.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.143 4.143 11 C -0.181 4.181 12 C -0.019 4.019 13 N -0.318 5.318 14 C -0.062 4.062 15 C 0.038 3.962 16 H 0.098 0.902 17 C -0.193 4.193 18 C -0.113 4.113 19 C -0.166 4.166 20 C -0.105 4.105 21 C -0.176 4.176 22 C -0.107 4.107 23 C -0.168 4.168 24 C 0.096 3.904 25 O -0.223 6.223 26 C -0.138 4.138 27 C -0.147 4.147 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.164 0.836 36 H 0.106 0.894 37 H 0.058 0.942 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.145 0.855 45 H 0.149 0.851 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.066 0.934 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.725 -22.414 7.388 24.832 hybrid contribution -0.323 1.434 0.405 1.524 sum -8.048 -20.981 7.793 23.784 Atomic orbital electron populations 1.69885 1.05844 1.26206 1.51109 1.24981 0.94831 0.98980 0.95316 0.86657 0.79895 0.83763 0.78043 1.20764 1.21339 1.20007 1.21259 0.92880 0.90834 1.49993 0.92821 1.18655 0.92668 0.91576 0.94132 1.21547 0.99429 0.94616 0.98758 1.22271 0.98069 0.97945 0.99857 1.21639 0.94989 0.86180 0.99069 1.60716 1.28880 1.33174 1.08998 1.21997 0.98109 0.93596 0.92514 1.22633 0.83745 0.99316 0.90459 0.90202 1.22251 1.02212 0.97509 0.97327 1.20464 0.96246 0.97459 0.97112 1.19849 1.00474 0.98207 0.98026 1.20875 0.93924 0.97133 0.98529 1.20988 0.99991 1.00347 0.96306 1.20933 0.97662 0.93858 0.98211 1.20676 0.96171 1.01076 0.98927 1.18733 0.90288 0.88092 0.93327 1.86000 1.28224 1.40534 1.67584 1.21481 0.97866 0.97854 0.96599 1.21629 0.98615 0.94393 1.00036 0.93158 0.95777 0.94989 0.89210 0.92769 0.94378 0.91300 0.83571 0.89355 0.94173 0.89511 0.90407 0.90458 0.90118 0.86077 0.86087 0.85540 0.85104 0.92787 0.93123 0.93390 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 11.33 55.43 0.63 -25.05 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.14 8.56 -34.44 -0.29 -14.43 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.05 1.20 2.10 -91.77 -0.19 1.00 16 10 C -0.10 -2.46 4.98 -26.73 -0.13 -2.60 16 11 C -0.14 -2.75 5.17 -26.73 -0.14 -2.89 16 12 C 0.09 1.53 2.47 -67.71 -0.17 1.36 16 13 N -0.69 -10.08 6.25 -106.72 -0.67 -10.75 16 14 C 0.07 0.83 5.23 -3.82 -0.02 0.81 16 15 C 0.09 1.05 3.07 -26.52 -0.08 0.97 16 16 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 17 C -0.15 -1.37 5.49 -26.49 -0.15 -1.51 16 18 C -0.08 -0.62 5.86 -27.81 -0.16 -0.79 16 19 C -0.16 -1.70 5.75 -104.44 -0.60 -2.30 16 20 C -0.09 -0.78 9.67 -39.53 -0.38 -1.16 16 21 C -0.16 -1.37 10.04 -39.61 -0.40 -1.76 16 22 C -0.09 -0.82 10.04 -39.66 -0.40 -1.22 16 23 C -0.15 -1.67 9.94 -39.34 -0.39 -2.06 16 24 C 0.14 1.71 6.47 -39.19 -0.25 1.45 16 25 O -0.31 -4.03 9.31 -19.25 -0.18 -4.21 16 26 C -0.10 -1.79 5.53 -26.73 -0.15 -1.94 16 27 C -0.11 -2.27 5.14 -26.73 -0.14 -2.41 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 2.39 6.08 -51.93 -0.32 2.08 16 32 H 0.05 1.09 8.13 -51.93 -0.42 0.66 16 33 H 0.04 0.70 7.46 -51.93 -0.39 0.31 16 34 H 0.07 1.17 7.80 -51.93 -0.41 0.77 16 35 H 0.35 5.27 7.91 -39.29 -0.31 4.96 16 36 H 0.09 0.99 8.06 -51.93 -0.42 0.57 16 37 H 0.04 0.53 7.44 -51.93 -0.39 0.15 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 43 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 44 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 45 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 46 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 379.26 15.07 5.72 5.72 Total: -1.00 -29.20 379.26 -12.19 -41.40 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -8.53 Total: 4.37 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: -4.14 Total: -27.91 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: -0.04 Total: -35.80 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -0.18 Total: -4.21 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.20 -12.19 -41.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334400.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.945 kcal (2) G-P(sol) polarization free energy of solvation -29.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds