Wall clock time and date at job start Tue Mar 31 2020 11:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.52999 * 109.47299 * 300.00060 * 9 7 2 11 11 C 1.53008 * 109.46901 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47448 * 59.99849 * 11 10 9 13 13 N 1.46901 * 109.47507 * 180.02562 * 12 11 10 14 14 C 1.46898 * 110.99649 * 275.00089 * 13 12 11 15 15 C 1.53002 * 109.47121 * 179.97438 * 14 13 12 16 16 H 1.08997 * 109.67777 * 59.47915 * 15 14 13 17 17 C 1.53398 * 109.68582 * 180.02562 * 15 14 13 18 18 C 1.53076 * 108.30236 * 184.43305 * 17 15 14 19 19 C 1.50769 * 109.67639 * 311.79009 * 18 17 15 20 20 C 1.38505 * 118.76658 * 197.82426 * 19 18 17 21 21 C 1.38106 * 120.32143 * 180.15861 * 20 19 18 22 22 C 1.38292 * 119.98170 * 0.02562 * 21 20 19 23 23 C 1.37967 * 119.95695 * 359.92240 * 22 21 20 24 24 C 1.38377 * 121.40760 * 17.84341 * 19 18 17 25 25 O 1.35842 * 121.80043 * 359.48425 * 24 19 18 26 26 C 1.53005 * 109.47190 * 300.00310 * 12 11 10 27 27 C 1.52994 * 109.47246 * 59.99659 * 26 12 11 28 28 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 30 30 H 1.08993 * 109.47037 * 300.00146 * 10 9 7 31 31 H 1.08997 * 109.47084 * 60.00847 * 10 9 7 32 32 H 1.09003 * 109.46610 * 299.99593 * 11 10 9 33 33 H 1.09001 * 109.46967 * 180.02562 * 11 10 9 34 34 H 1.09006 * 109.46920 * 59.99681 * 12 11 10 35 35 H 1.00902 * 110.99878 * 38.95462 * 13 12 11 36 36 H 1.08996 * 109.47322 * 299.99496 * 14 13 12 37 37 H 1.09003 * 109.47036 * 59.99880 * 14 13 12 38 38 H 1.09005 * 109.69788 * 304.13091 * 17 15 14 39 39 H 1.08999 * 109.70190 * 64.72821 * 17 15 14 40 40 H 1.09000 * 109.43752 * 71.84985 * 18 17 15 41 41 H 1.08996 * 109.43756 * 191.76894 * 18 17 15 42 42 H 1.08010 * 119.84097 * 0.14088 * 20 19 18 43 43 H 1.07992 * 120.00960 * 180.02562 * 21 20 19 44 44 H 1.07993 * 120.02116 * 179.97438 * 22 21 20 45 45 H 1.07999 * 119.89466 * 179.97438 * 23 22 21 46 46 H 1.09001 * 109.47064 * 299.99762 * 26 12 11 47 47 H 1.09006 * 109.47228 * 180.02562 * 26 12 11 48 48 H 1.08998 * 109.47353 * 180.02562 * 27 26 12 49 49 H 1.09006 * 109.47395 * 60.00303 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 0.3766 -2.5777 1.2583 11 6 -0.3880 -3.9030 1.2644 12 6 0.6065 -5.0656 1.2628 13 7 -0.1275 -6.3381 1.2680 14 6 -0.4888 -6.7316 2.6364 15 6 -1.2508 -8.0580 2.6012 16 1 -0.6263 -8.8281 2.1484 17 6 -1.6312 -8.4734 4.0280 18 6 -2.2912 -9.8532 3.9671 19 6 -3.3447 -9.8649 2.8886 20 6 -4.3053 -10.8625 2.9059 21 6 -5.2832 -10.9057 1.9317 22 6 -5.3059 -9.9500 0.9324 23 6 -4.3523 -8.9532 0.9106 24 6 -3.3669 -8.9052 1.8919 25 8 -2.4507 -7.9035 1.8421 26 6 1.4810 -4.9870 0.0097 27 6 2.2456 -3.6618 0.0036 28 1 -0.4850 0.8401 0.0004 29 1 0.6206 -2.5586 -0.8820 30 1 1.0070 -2.5182 2.1455 31 1 -0.3317 -1.7493 1.2596 32 1 -1.0183 -3.9628 0.3771 33 1 -1.0112 -3.9588 2.1569 34 1 1.2370 -5.0057 2.1500 35 1 -0.9450 -6.2863 0.6788 36 1 0.4165 -6.8481 3.2320 37 1 -1.1200 -5.9622 3.0811 38 1 -0.7357 -8.5216 4.6477 39 1 -2.3303 -7.7499 4.4473 40 1 -1.5360 -10.6071 3.7446 41 1 -2.7544 -10.0764 4.9282 42 1 -4.2893 -11.6105 3.6849 43 1 -6.0300 -11.6856 1.9502 44 1 -6.0701 -9.9834 0.1700 45 1 -4.3707 -8.2076 0.1295 46 1 0.8507 -5.0469 -0.8775 47 1 2.1893 -5.8156 0.0083 48 1 2.8682 -3.6056 -0.8893 49 1 2.8760 -3.6019 0.8909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334400.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:04 Heat of formation + Delta-G solvation = -59.079481 kcal Electronic energy + Delta-G solvation = -26105.058520 eV Core-core repulsion = 22608.721494 eV Total energy + Delta-G solvation = -3496.337026 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.66078 -39.79742 -38.56755 -36.37834 -35.27165 -34.23246 -32.12050 -31.32383 -31.09689 -30.05557 -27.76330 -26.00008 -24.61747 -23.53673 -23.34399 -23.10057 -22.11224 -20.82268 -20.47029 -18.81998 -18.39079 -17.55728 -17.13558 -16.61700 -16.17450 -16.13441 -15.61511 -15.36429 -15.09211 -14.96414 -14.88106 -14.70259 -14.39904 -14.16355 -14.03863 -13.85108 -13.45683 -13.33371 -13.09794 -12.91107 -12.86994 -12.63258 -12.47695 -12.35741 -12.19054 -12.14636 -11.82651 -11.79140 -11.69450 -11.61079 -11.30239 -11.15629 -10.78005 -10.57217 -10.37954 -9.71010 -9.28932 -9.07125 -8.07121 -6.21518 0.39227 0.50552 1.40063 1.40522 1.50882 2.28396 2.43230 2.82639 3.09357 3.19012 3.72138 3.73440 3.84296 3.91742 3.98765 4.08718 4.15003 4.24197 4.33948 4.38594 4.42575 4.49971 4.57853 4.59425 4.65336 4.66395 4.72955 4.80195 4.80457 4.87209 4.93087 4.97322 5.05051 5.10710 5.12341 5.19485 5.24590 5.31820 5.39924 5.40124 5.47026 5.55342 5.60885 5.62016 5.68237 5.92859 6.04070 6.10967 6.20742 6.39850 6.43714 6.57658 6.92022 7.46535 8.96491 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.026734 B = 0.002352 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.098332 B =11903.900124 C =12283.551331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.009 3.991 3 Si 0.952 3.048 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.533 4.533 8 H 0.052 0.948 9 C 0.044 3.956 10 C -0.097 4.097 11 C -0.131 4.131 12 C 0.102 3.898 13 N -0.682 5.682 14 C 0.067 3.933 15 C 0.095 3.905 16 H 0.079 0.921 17 C -0.150 4.150 18 C -0.074 4.074 19 C -0.174 4.174 20 C -0.091 4.091 21 C -0.158 4.158 22 C -0.094 4.094 23 C -0.174 4.174 24 C 0.111 3.889 25 O -0.333 6.333 26 C -0.092 4.092 27 C -0.101 4.101 28 H 0.259 0.741 29 H -0.012 1.012 30 H 0.029 0.971 31 H 0.053 0.947 32 H 0.040 0.960 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.342 0.658 36 H 0.107 0.893 37 H 0.030 0.970 38 H 0.109 0.891 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.123 0.877 46 H 0.045 0.955 47 H 0.074 0.926 48 H 0.046 0.954 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.729 -24.514 8.986 27.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.189 4.189 3 Si 0.778 3.222 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.571 4.571 8 H 0.070 0.930 9 C 0.026 3.974 10 C -0.135 4.135 11 C -0.170 4.170 12 C -0.007 4.007 13 N -0.311 5.311 14 C -0.062 4.062 15 C 0.040 3.960 16 H 0.097 0.903 17 C -0.188 4.188 18 C -0.111 4.111 19 C -0.175 4.175 20 C -0.108 4.108 21 C -0.176 4.176 22 C -0.112 4.112 23 C -0.192 4.192 24 C 0.066 3.934 25 O -0.248 6.248 26 C -0.130 4.130 27 C -0.139 4.139 28 H 0.068 0.932 29 H 0.006 0.994 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.160 0.840 36 H 0.125 0.875 37 H 0.048 0.952 38 H 0.127 0.873 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.117 0.883 42 H 0.165 0.835 43 H 0.166 0.834 44 H 0.164 0.836 45 H 0.141 0.859 46 H 0.064 0.936 47 H 0.092 0.908 48 H 0.065 0.935 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.293 -24.615 8.883 27.166 hybrid contribution -0.525 2.085 -0.090 2.152 sum -7.818 -22.530 8.793 25.417 Atomic orbital electron populations 1.70040 1.07219 1.26921 1.51693 1.25777 0.95665 1.02446 0.95019 0.85642 0.78817 0.79542 0.78185 1.20247 1.20993 1.19150 1.21659 0.93079 0.92373 1.50027 0.92954 1.18639 0.93126 0.92534 0.93127 1.21331 0.98646 0.95679 0.97892 1.22137 0.98234 0.96928 0.99710 1.21435 0.94354 0.86106 0.98848 1.60703 1.28755 1.31137 1.10509 1.22117 0.98946 0.94044 0.91079 1.22631 0.83247 0.98303 0.91866 0.90287 1.22231 1.02979 0.97665 0.95879 1.20533 0.96053 0.97223 0.97269 1.20171 1.01395 0.97941 0.98026 1.21250 0.93304 0.97145 0.99137 1.21376 1.00258 1.00414 0.95566 1.21227 0.97531 0.93376 0.99017 1.20857 0.97188 1.01967 0.99207 1.19029 0.90750 0.88962 0.94660 1.85952 1.28954 1.41495 1.68442 1.21388 0.98061 0.96757 0.96809 1.21495 0.97856 0.94375 1.00183 0.93222 0.99350 0.95220 0.92836 0.94092 0.93349 0.90473 0.84040 0.87529 0.95187 0.87279 0.91428 0.89242 0.88268 0.83461 0.83448 0.83577 0.85898 0.93568 0.90776 0.93515 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.59 11.33 21.45 0.24 -54.35 16 2 C 0.01 0.51 5.30 84.66 0.45 0.96 16 3 Si 0.95 44.50 29.54 68.60 2.03 46.53 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.53 -30.09 8.56 25.60 0.22 -29.87 16 8 H 0.05 2.89 7.74 -2.92 -0.02 2.87 16 9 C 0.04 2.27 2.10 -11.54 -0.02 2.24 16 10 C -0.10 -4.68 4.98 30.60 0.15 -4.53 16 11 C -0.13 -5.13 5.17 30.59 0.16 -4.97 16 12 C 0.10 3.37 2.47 44.91 0.11 3.48 16 13 N -0.68 -19.30 6.25 -491.57 -3.07 -22.37 16 14 C 0.07 1.57 5.23 86.30 0.45 2.02 16 15 C 0.10 2.01 3.07 30.73 0.09 2.11 16 16 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 17 C -0.15 -2.35 5.49 30.75 0.17 -2.18 16 18 C -0.07 -1.03 5.86 29.90 0.18 -0.86 16 19 C -0.17 -3.35 5.75 -19.75 -0.11 -3.46 16 20 C -0.09 -1.41 9.67 22.30 0.22 -1.19 16 21 C -0.16 -2.38 10.04 22.25 0.22 -2.16 16 22 C -0.09 -1.64 10.04 22.22 0.22 -1.42 16 23 C -0.17 -3.95 9.94 22.42 0.22 -3.73 16 24 C 0.11 2.68 6.47 22.52 0.15 2.83 16 25 O -0.33 -8.79 9.31 -91.78 -0.85 -9.64 16 26 C -0.09 -3.22 5.53 30.59 0.17 -3.05 16 27 C -0.10 -4.21 5.14 30.59 0.16 -4.05 16 28 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 29 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 30 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.05 2.97 6.08 -2.39 -0.01 2.96 16 32 H 0.04 1.69 8.13 -2.39 -0.02 1.67 16 33 H 0.05 1.78 7.46 -2.39 -0.02 1.76 16 34 H 0.08 2.47 7.80 -2.38 -0.02 2.45 16 35 H 0.34 10.40 7.91 -89.69 -0.71 9.69 16 36 H 0.11 2.10 8.06 -2.39 -0.02 2.08 16 37 H 0.03 0.77 7.44 -2.39 -0.02 0.75 16 38 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 43 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 44 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 45 H 0.12 2.81 8.06 -2.91 -0.02 2.79 16 46 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 48 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 49 H 0.05 2.06 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -64.92 379.26 1.75 -63.17 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.20 Total: 24.49 kcal Atomic # 6 Polarization: -51.03 SS G_CDS: 3.20 Total: -47.83 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -2.83 Total: -76.72 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.85 Total: -9.64 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -64.92 1.75 -63.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334400.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.095 kcal (2) G-P(sol) polarization free energy of solvation -64.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds