Wall clock time and date at job start Tue Mar 31 2020 12:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00073 * 2 1 4 4 H 1.48507 * 109.46806 * 269.99564 * 3 2 1 5 5 H 1.48495 * 109.47358 * 29.99545 * 3 2 1 6 6 H 1.48501 * 109.47108 * 149.99922 * 3 2 1 7 7 C 1.37882 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99702 * 0.02562 * 7 2 1 9 9 C 1.50690 * 120.00229 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47251 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47253 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46891 * 299.99665 * 11 10 9 13 13 N 1.46898 * 109.47141 * 179.97438 * 12 11 10 14 14 C 1.47843 * 110.99854 * 59.15748 * 13 12 11 15 15 C 1.55380 * 104.84000 * 146.36832 * 14 13 12 16 16 C 1.55142 * 101.43666 * 322.95966 * 15 14 13 17 17 H 1.09005 * 110.70305 * 277.17316 * 16 15 14 18 18 O 1.42903 * 110.70546 * 154.11687 * 16 15 14 19 19 C 1.35896 * 117.00120 * 96.29902 * 18 16 15 20 20 C 1.38739 * 120.05411 * 174.07042 * 19 18 16 21 21 C 1.38146 * 119.94059 * 179.75186 * 20 19 18 22 22 C 1.38268 * 120.05907 * 0.50377 * 21 20 19 23 23 C 1.38263 * 120.10916 * 359.77051 * 22 21 20 24 24 C 1.38148 * 120.05685 * 359.97438 * 23 22 21 25 25 C 1.47437 * 111.00059 * 180.02562 * 13 12 11 26 26 C 1.53006 * 109.47261 * 60.00191 * 12 11 10 27 27 C 1.53005 * 109.47012 * 300.00064 * 9 7 2 28 28 H 0.97004 * 120.00245 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47562 * 59.99987 * 9 7 2 30 30 H 1.08993 * 109.47184 * 59.99499 * 10 9 7 31 31 H 1.09000 * 109.46937 * 299.99709 * 10 9 7 32 32 H 1.08998 * 109.46557 * 179.97438 * 11 10 9 33 33 H 1.08996 * 109.46745 * 59.99637 * 11 10 9 34 34 H 1.08995 * 109.47535 * 300.00106 * 12 11 10 35 35 H 1.09005 * 110.37693 * 265.19594 * 14 13 12 36 36 H 1.09002 * 110.37615 * 27.42530 * 14 13 12 37 37 H 1.08991 * 111.17697 * 204.90144 * 15 14 13 38 38 H 1.09006 * 111.00496 * 80.94032 * 15 14 13 39 39 H 1.07998 * 120.02734 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.96740 * 180.23635 * 21 20 19 41 41 H 1.07994 * 119.94696 * 179.74943 * 22 21 20 42 42 H 1.08001 * 119.97714 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.02619 * 179.97438 * 24 23 22 44 44 H 1.09006 * 109.88599 * 117.34149 * 25 13 12 45 45 H 1.09000 * 110.02822 * 356.22456 * 25 13 12 46 46 H 1.09005 * 109.46902 * 59.99682 * 26 12 11 47 47 H 1.09000 * 109.47298 * 179.97438 * 26 12 11 48 48 H 1.08996 * 109.47371 * 299.99585 * 27 9 7 49 49 H 1.08996 * 109.46874 * 60.00501 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0010 11 6 5.5515 -2.6367 0.0022 12 6 6.0624 -1.9150 -1.2464 13 7 7.5314 -1.9145 -1.2449 14 6 8.0617 -3.2944 -1.2243 15 6 9.3726 -3.2294 -2.0559 16 6 8.9803 -2.2242 -3.1706 17 1 8.4398 -2.7286 -3.9716 18 8 10.1378 -1.5616 -3.6837 19 6 10.6902 -2.0725 -4.8154 20 6 11.7385 -1.4098 -5.4372 21 6 12.3017 -1.9338 -6.5847 22 6 11.8146 -3.1123 -7.1193 23 6 10.7662 -3.7716 -6.5047 24 6 10.2030 -3.2544 -5.3541 25 6 8.0607 -1.2253 -2.4360 26 6 5.5525 -0.4725 -1.2463 27 6 4.0219 -0.4731 -1.2481 28 1 -0.4851 0.8401 -0.0004 29 1 3.8745 -0.6801 0.8911 30 1 3.6584 -3.1503 -0.8891 31 1 3.6578 -3.1506 0.8908 32 1 5.9147 -3.6643 0.0026 33 1 5.9140 -2.1231 0.8927 34 1 5.6998 -2.4285 -2.1368 35 1 8.2767 -3.6031 -0.2013 36 1 7.3517 -3.9808 -1.6857 37 1 9.6199 -4.2034 -2.4779 38 1 10.1973 -2.8448 -1.4558 39 1 12.1164 -0.4869 -5.0225 40 1 13.1203 -1.4203 -7.0669 41 1 12.2535 -3.5182 -8.0187 42 1 10.3871 -4.6917 -6.9244 43 1 9.3838 -3.7696 -4.8747 44 1 8.6325 -0.3480 -2.1333 45 1 7.2410 -0.9263 -3.0893 46 1 5.9151 0.0411 -0.3558 47 1 5.9168 0.0418 -2.1356 48 1 3.6590 -0.9871 -2.1381 49 1 3.6586 0.5546 -1.2484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173338338.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:08 Heat of formation + Delta-G solvation = -11.769587 kcal Electronic energy + Delta-G solvation = -26374.445717 eV Core-core repulsion = 22880.160202 eV Total energy + Delta-G solvation = -3494.285515 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.71346 -39.39020 -37.79013 -36.40945 -32.91681 -31.55182 -31.09104 -30.59320 -30.04807 -28.62461 -28.09243 -24.44002 -23.32928 -22.80978 -22.25128 -21.60441 -20.73238 -19.94066 -19.06240 -18.71348 -16.72731 -16.61284 -16.34619 -15.93164 -15.38416 -15.09246 -14.73559 -14.44935 -14.05857 -13.89690 -13.73785 -13.59303 -13.19015 -13.05386 -12.96776 -12.66102 -12.51006 -12.39012 -12.08467 -11.89643 -11.57016 -11.40386 -11.34245 -11.23909 -10.89651 -10.81087 -10.76947 -10.62138 -10.46453 -9.98198 -9.78137 -9.52551 -9.33411 -8.97916 -8.88059 -8.49360 -8.48638 -8.29973 -6.04438 -4.02970 1.00777 1.13212 2.85295 3.29187 3.40813 3.43396 3.47104 3.87952 4.27949 4.40199 4.44102 4.49207 4.56089 4.65586 4.82565 4.94565 5.05356 5.12387 5.15708 5.20534 5.21282 5.31460 5.35681 5.40269 5.53392 5.66395 5.67322 5.76225 5.78907 5.84433 5.92829 6.03113 6.06924 6.08510 6.11922 6.16712 6.20700 6.25038 6.28989 6.47349 6.55265 6.65435 6.73517 6.90219 6.96480 7.03115 7.16171 7.21463 7.31663 7.60497 7.82068 8.56198 9.00004 9.58873 11.08971 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.024076 B = 0.002604 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.704635 B =10749.190575 C =11163.761939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.264 1.264 7 C -0.512 4.512 8 H 0.072 0.928 9 C 0.014 3.986 10 C -0.097 4.097 11 C -0.110 4.110 12 C 0.085 3.915 13 N -0.519 5.519 14 C 0.045 3.955 15 C -0.147 4.147 16 C 0.060 3.940 17 H 0.083 0.917 18 O -0.301 6.301 19 C 0.134 3.866 20 C -0.155 4.155 21 C -0.081 4.081 22 C -0.163 4.163 23 C -0.080 4.080 24 C -0.211 4.211 25 C 0.046 3.954 26 C -0.114 4.114 27 C -0.118 4.118 28 H 0.263 0.737 29 H 0.027 0.973 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.040 0.960 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.128 0.872 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.049 0.951 48 H 0.057 0.943 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.603 -6.889 -11.089 27.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.227 1.227 6 H -0.188 1.188 7 C -0.550 4.550 8 H 0.090 0.910 9 C -0.005 4.005 10 C -0.135 4.135 11 C -0.148 4.148 12 C -0.023 4.023 13 N -0.244 5.244 14 C -0.083 4.083 15 C -0.185 4.185 16 C 0.003 3.997 17 H 0.101 0.899 18 O -0.213 6.213 19 C 0.088 3.912 20 C -0.174 4.174 21 C -0.099 4.099 22 C -0.181 4.181 23 C -0.098 4.098 24 C -0.230 4.230 25 C -0.082 4.082 26 C -0.152 4.152 27 C -0.156 4.156 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.146 0.854 44 H 0.108 0.892 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.067 0.933 48 H 0.076 0.924 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 24.644 -6.347 -10.510 27.533 hybrid contribution -0.088 0.352 -0.916 0.985 sum 24.556 -5.996 -11.427 27.740 Atomic orbital electron populations 1.69903 1.06317 1.26849 1.51159 1.25040 0.94680 0.99082 0.94564 0.86845 0.80019 0.83564 0.77817 1.20735 1.22685 1.18846 1.21096 0.89049 0.94338 1.50534 0.90993 1.19151 0.96321 0.91869 0.93134 1.21429 0.91879 0.99195 1.01021 1.21647 0.97508 0.98489 0.97113 1.21899 0.84714 0.97547 0.98101 1.63740 1.09038 1.14326 1.37293 1.23038 0.94156 0.90301 1.00762 1.23280 0.99262 0.98958 0.97040 1.23877 0.85537 0.94427 0.95876 0.89939 1.86136 1.42730 1.54305 1.38170 1.19091 0.93457 0.92263 0.86363 1.20488 0.97837 1.01708 0.97325 1.20981 0.98782 0.95502 0.94676 1.21066 0.98835 0.96868 1.01352 1.20969 0.95323 0.99156 0.94331 1.21320 1.03953 0.97771 0.99949 1.22871 0.96865 0.97397 0.91052 1.21733 0.97600 0.94552 1.01293 1.21974 0.91888 1.00354 1.01397 0.92769 0.95481 0.92995 0.92464 0.93200 0.91549 0.94168 0.89577 0.93121 0.90552 0.89386 0.85193 0.85424 0.85982 0.85841 0.85379 0.89209 0.91306 0.91607 0.93277 0.92432 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 2 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 3 Si 0.89 22.16 24.37 -169.99 -4.14 18.02 16 4 H -0.28 -6.82 6.87 56.52 0.39 -6.43 16 5 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.26 -6.31 6.53 56.52 0.37 -5.94 16 7 C -0.51 -14.30 9.14 -34.44 -0.31 -14.62 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C 0.01 0.32 1.69 -91.77 -0.16 0.17 16 10 C -0.10 -1.87 5.14 -26.73 -0.14 -2.01 16 11 C -0.11 -1.74 5.09 -26.73 -0.14 -1.88 16 12 C 0.08 1.30 1.53 -67.71 -0.10 1.20 16 13 N -0.52 -6.89 5.03 -222.95 -1.12 -8.02 16 14 C 0.04 0.49 5.41 -2.04 -0.01 0.48 16 15 C -0.15 -1.43 6.84 -24.33 -0.17 -1.60 16 16 C 0.06 0.64 2.83 -24.88 -0.07 0.57 16 17 H 0.08 0.82 5.88 -51.93 -0.31 0.52 16 18 O -0.30 -3.51 9.86 -19.41 -0.19 -3.70 16 19 C 0.13 1.44 6.68 -39.21 -0.26 1.18 16 20 C -0.15 -1.48 9.99 -39.43 -0.39 -1.87 16 21 C -0.08 -0.65 10.04 -39.60 -0.40 -1.04 16 22 C -0.16 -1.26 10.04 -39.56 -0.40 -1.66 16 23 C -0.08 -0.66 10.04 -39.60 -0.40 -1.06 16 24 C -0.21 -2.02 8.98 -39.43 -0.35 -2.38 16 25 C 0.05 0.57 5.92 -2.81 -0.02 0.55 16 26 C -0.11 -1.98 5.07 -26.70 -0.14 -2.12 16 27 C -0.12 -2.50 4.69 -26.70 -0.13 -2.63 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.05 0.69 7.03 -51.93 -0.37 0.33 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.04 0.62 8.10 -51.93 -0.42 0.20 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.54 7.57 -51.93 -0.39 0.15 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 43 H 0.13 1.10 5.94 -52.49 -0.31 0.79 16 44 H 0.09 1.14 8.06 -51.93 -0.42 0.73 16 45 H 0.07 0.86 6.35 -51.93 -0.33 0.53 16 46 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.05 0.78 6.50 -51.93 -0.34 0.44 16 48 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 49 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 LS Contribution 367.86 15.07 5.54 5.54 Total: -1.00 -30.54 367.86 -10.91 -41.45 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -8.10 Total: 0.61 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -3.67 Total: -26.86 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: -0.35 Total: -35.06 kcal Atomic # 8 Polarization: -3.51 SS G_CDS: -0.19 Total: -3.70 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.14 Total: 18.02 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.54 -10.91 -41.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338338.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.683 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds