Wall clock time and date at job start Tue Mar 31 2020 12:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00073 * 2 1 4 4 H 1.48507 * 109.46806 * 269.99564 * 3 2 1 5 5 H 1.48495 * 109.47358 * 29.99545 * 3 2 1 6 6 H 1.48501 * 109.47108 * 149.99922 * 3 2 1 7 7 C 1.37882 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99702 * 0.02562 * 7 2 1 9 9 C 1.50690 * 120.00229 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47251 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47253 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46891 * 299.99665 * 11 10 9 13 13 N 1.46898 * 109.47141 * 179.97438 * 12 11 10 14 14 C 1.47843 * 110.99854 * 59.15748 * 13 12 11 15 15 C 1.55380 * 104.84000 * 146.36832 * 14 13 12 16 16 C 1.55142 * 101.43666 * 322.95966 * 15 14 13 17 17 H 1.09005 * 110.70305 * 277.17316 * 16 15 14 18 18 O 1.42903 * 110.70546 * 154.11687 * 16 15 14 19 19 C 1.35896 * 117.00120 * 96.29902 * 18 16 15 20 20 C 1.38739 * 120.05411 * 174.07042 * 19 18 16 21 21 C 1.38146 * 119.94059 * 179.75186 * 20 19 18 22 22 C 1.38268 * 120.05907 * 0.50377 * 21 20 19 23 23 C 1.38263 * 120.10916 * 359.77051 * 22 21 20 24 24 C 1.38148 * 120.05685 * 359.97438 * 23 22 21 25 25 C 1.47437 * 111.00059 * 180.02562 * 13 12 11 26 26 C 1.53006 * 109.47261 * 60.00191 * 12 11 10 27 27 C 1.53005 * 109.47012 * 300.00064 * 9 7 2 28 28 H 0.97004 * 120.00245 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47562 * 59.99987 * 9 7 2 30 30 H 1.08993 * 109.47184 * 59.99499 * 10 9 7 31 31 H 1.09000 * 109.46937 * 299.99709 * 10 9 7 32 32 H 1.08998 * 109.46557 * 179.97438 * 11 10 9 33 33 H 1.08996 * 109.46745 * 59.99637 * 11 10 9 34 34 H 1.08995 * 109.47535 * 300.00106 * 12 11 10 35 35 H 1.09005 * 110.37693 * 265.19594 * 14 13 12 36 36 H 1.09002 * 110.37615 * 27.42530 * 14 13 12 37 37 H 1.08991 * 111.17697 * 204.90144 * 15 14 13 38 38 H 1.09006 * 111.00496 * 80.94032 * 15 14 13 39 39 H 1.07998 * 120.02734 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.96740 * 180.23635 * 21 20 19 41 41 H 1.07994 * 119.94696 * 179.74943 * 22 21 20 42 42 H 1.08001 * 119.97714 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.02619 * 179.97438 * 24 23 22 44 44 H 1.09006 * 109.88599 * 117.34149 * 25 13 12 45 45 H 1.09000 * 110.02822 * 356.22456 * 25 13 12 46 46 H 1.09005 * 109.46902 * 59.99682 * 26 12 11 47 47 H 1.09000 * 109.47298 * 179.97438 * 26 12 11 48 48 H 1.08996 * 109.47371 * 299.99585 * 27 9 7 49 49 H 1.08996 * 109.46874 * 60.00501 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0010 11 6 5.5515 -2.6367 0.0022 12 6 6.0624 -1.9150 -1.2464 13 7 7.5314 -1.9145 -1.2449 14 6 8.0617 -3.2944 -1.2243 15 6 9.3726 -3.2294 -2.0559 16 6 8.9803 -2.2242 -3.1706 17 1 8.4398 -2.7286 -3.9716 18 8 10.1378 -1.5616 -3.6837 19 6 10.6902 -2.0725 -4.8154 20 6 11.7385 -1.4098 -5.4372 21 6 12.3017 -1.9338 -6.5847 22 6 11.8146 -3.1123 -7.1193 23 6 10.7662 -3.7716 -6.5047 24 6 10.2030 -3.2544 -5.3541 25 6 8.0607 -1.2253 -2.4360 26 6 5.5525 -0.4725 -1.2463 27 6 4.0219 -0.4731 -1.2481 28 1 -0.4851 0.8401 -0.0004 29 1 3.8745 -0.6801 0.8911 30 1 3.6584 -3.1503 -0.8891 31 1 3.6578 -3.1506 0.8908 32 1 5.9147 -3.6643 0.0026 33 1 5.9140 -2.1231 0.8927 34 1 5.6998 -2.4285 -2.1368 35 1 8.2767 -3.6031 -0.2013 36 1 7.3517 -3.9808 -1.6857 37 1 9.6199 -4.2034 -2.4779 38 1 10.1973 -2.8448 -1.4558 39 1 12.1164 -0.4869 -5.0225 40 1 13.1203 -1.4203 -7.0669 41 1 12.2535 -3.5182 -8.0187 42 1 10.3871 -4.6917 -6.9244 43 1 9.3838 -3.7696 -4.8747 44 1 8.6325 -0.3480 -2.1333 45 1 7.2410 -0.9263 -3.0893 46 1 5.9151 0.0411 -0.3558 47 1 5.9168 0.0418 -2.1356 48 1 3.6590 -0.9871 -2.1381 49 1 3.6586 0.5546 -1.2484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173338338.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:07 Heat of formation + Delta-G solvation = -29.385544 kcal Electronic energy + Delta-G solvation = -26375.209602 eV Core-core repulsion = 22880.160202 eV Total energy + Delta-G solvation = -3495.049400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.51277 -40.41397 -38.77950 -37.53086 -34.77338 -32.86988 -31.95409 -31.87086 -30.86303 -29.82202 -29.20678 -26.13503 -24.23068 -23.77231 -23.27179 -22.77183 -21.71448 -21.18564 -20.53010 -19.47780 -18.74731 -17.68629 -17.19438 -16.75791 -16.49821 -16.16950 -15.78967 -15.53330 -15.11533 -15.05419 -14.96380 -14.64870 -14.60012 -14.35461 -14.09355 -14.06304 -13.56569 -13.43925 -13.25333 -12.96268 -12.84065 -12.64892 -12.46247 -12.29516 -12.20071 -12.04815 -11.96335 -11.84527 -11.62249 -11.56409 -11.53557 -11.20662 -10.88783 -10.74992 -10.49309 -9.95794 -9.32609 -9.15715 -8.29488 -6.32023 0.38511 0.48278 1.29173 1.35452 1.46115 2.09424 2.32526 2.83821 2.88570 3.06404 3.44401 3.56533 3.77066 3.88322 3.90276 3.93813 4.00769 4.18190 4.28506 4.29551 4.31787 4.39958 4.46441 4.48316 4.51931 4.57976 4.68864 4.70971 4.72977 4.75604 4.78297 4.82827 4.91096 4.97536 5.03947 5.04938 5.08789 5.13095 5.25154 5.37076 5.37685 5.44547 5.48379 5.59299 5.60294 5.71428 5.81748 5.87064 5.97751 6.08909 6.34162 6.45544 6.76020 7.33554 8.87481 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.024076 B = 0.002604 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.704635 B =10749.190575 C =11163.761939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.009 3.991 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.302 1.302 6 H -0.246 1.246 7 C -0.516 4.516 8 H 0.033 0.967 9 C 0.012 3.988 10 C -0.093 4.093 11 C -0.099 4.099 12 C 0.092 3.908 13 N -0.525 5.525 14 C 0.043 3.957 15 C -0.137 4.137 16 C 0.064 3.936 17 H 0.090 0.910 18 O -0.316 6.316 19 C 0.109 3.891 20 C -0.171 4.171 21 C -0.084 4.084 22 C -0.165 4.165 23 C -0.087 4.087 24 C -0.221 4.221 25 C 0.045 3.955 26 C -0.107 4.107 27 C -0.116 4.116 28 H 0.264 0.736 29 H 0.020 0.980 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.132 0.868 40 H 0.152 0.848 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.135 0.865 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.066 0.934 48 H 0.053 0.947 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.805 -7.424 -12.401 31.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.195 1.195 5 H -0.230 1.230 6 H -0.170 1.170 7 C -0.554 4.554 8 H 0.051 0.949 9 C -0.007 4.007 10 C -0.131 4.131 11 C -0.137 4.137 12 C -0.016 4.016 13 N -0.250 5.250 14 C -0.084 4.084 15 C -0.175 4.175 16 C 0.006 3.994 17 H 0.108 0.892 18 O -0.230 6.230 19 C 0.064 3.936 20 C -0.190 4.190 21 C -0.101 4.101 22 C -0.183 4.183 23 C -0.105 4.105 24 C -0.240 4.240 25 C -0.083 4.083 26 C -0.145 4.145 27 C -0.154 4.154 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.150 0.850 40 H 0.169 0.831 41 H 0.164 0.836 42 H 0.162 0.838 43 H 0.152 0.848 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.071 0.929 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 27.876 -6.901 -11.827 31.057 hybrid contribution -1.098 0.424 -0.551 1.300 sum 26.778 -6.477 -12.378 30.203 Atomic orbital electron populations 1.70054 1.08186 1.27859 1.53220 1.25892 0.95398 1.02984 0.94465 0.85832 0.79170 0.78817 0.78535 1.19452 1.22959 1.17038 1.21472 0.91898 0.92763 1.49312 0.94905 1.19132 0.93000 0.94693 0.93838 1.21329 0.94680 0.96479 1.00620 1.21522 0.94420 1.00340 0.97407 1.21705 0.86234 0.95860 0.97768 1.63668 1.07399 1.15991 1.37971 1.23129 0.94705 0.89020 1.01549 1.23215 0.98384 0.99550 0.96373 1.23810 0.85346 0.93999 0.96199 0.89222 1.86097 1.43049 1.54963 1.38865 1.19348 0.94381 0.93245 0.86619 1.20725 0.98047 1.02116 0.98102 1.21316 0.99100 0.95669 0.94047 1.21439 0.98391 0.96555 1.01901 1.21302 0.95344 0.99909 0.93926 1.21477 1.04341 0.97591 1.00561 1.22827 0.97032 0.97592 0.90835 1.21630 0.94477 0.96424 1.01961 1.21835 0.94826 0.98834 0.99870 0.92708 0.96193 0.93336 0.93082 0.90463 0.91789 0.93948 0.88883 0.92370 0.88759 0.89959 0.84978 0.83060 0.83601 0.83824 0.84782 0.89930 0.91633 0.92033 0.91539 0.92852 0.94942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.57 13.96 21.45 0.30 -60.27 16 2 C 0.01 0.53 5.45 84.66 0.46 1.00 16 3 Si 0.95 46.14 24.37 68.60 1.67 47.81 16 4 H -0.27 -12.44 6.87 99.48 0.68 -11.75 16 5 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 6 H -0.25 -11.18 6.53 99.48 0.65 -10.53 16 7 C -0.52 -29.69 9.14 25.60 0.23 -29.46 16 8 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 9 C 0.01 0.56 1.69 -11.54 -0.02 0.54 16 10 C -0.09 -3.53 5.14 30.60 0.16 -3.37 16 11 C -0.10 -2.92 5.09 30.59 0.16 -2.77 16 12 C 0.09 2.60 1.53 44.92 0.07 2.67 16 13 N -0.53 -12.62 5.03 -859.28 -4.32 -16.95 16 14 C 0.04 0.81 5.41 86.94 0.47 1.28 16 15 C -0.14 -2.32 6.84 32.15 0.22 -2.10 16 16 C 0.06 1.24 2.83 31.79 0.09 1.33 16 17 H 0.09 1.60 5.88 -2.38 -0.01 1.59 16 18 O -0.32 -7.04 9.86 -92.38 -0.91 -7.95 16 19 C 0.11 2.21 6.68 22.51 0.15 2.36 16 20 C -0.17 -3.06 9.99 22.37 0.22 -2.84 16 21 C -0.08 -1.14 10.04 22.25 0.22 -0.92 16 22 C -0.16 -2.10 10.04 22.28 0.22 -1.88 16 23 C -0.09 -1.23 10.04 22.25 0.22 -1.00 16 24 C -0.22 -3.82 8.98 22.37 0.20 -3.62 16 25 C 0.05 1.02 5.92 86.66 0.51 1.54 16 26 C -0.11 -3.50 5.07 30.62 0.16 -3.35 16 27 C -0.12 -4.78 4.69 30.62 0.14 -4.63 16 28 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 29 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.08 1.89 7.03 -2.39 -0.02 1.87 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.04 1.20 8.10 -2.39 -0.02 1.18 16 35 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.06 1.04 7.57 -2.39 -0.02 1.02 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.13 2.16 8.06 -2.91 -0.02 2.13 16 40 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 41 H 0.15 1.11 8.06 -2.91 -0.02 1.08 16 42 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 43 H 0.13 2.03 5.94 -2.91 -0.02 2.01 16 44 H 0.08 1.99 8.06 -2.38 -0.02 1.97 16 45 H 0.07 1.52 6.35 -2.39 -0.02 1.50 16 46 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 47 H 0.07 1.95 6.50 -2.39 -0.02 1.94 16 48 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.03 1.43 3.27 -2.39 -0.01 1.42 16 Total: -1.00 -67.70 367.86 1.47 -66.23 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.84 Total: 16.35 kcal Atomic # 6 Polarization: -49.11 SS G_CDS: 3.89 Total: -45.22 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -4.02 Total: -77.22 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.91 Total: -7.95 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.67 Total: 47.81 kcal Total: -67.70 1.47 -66.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338338.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.841 kcal (2) G-P(sol) polarization free energy of solvation -67.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds