Wall clock time and date at job start Tue Mar 31 2020 12:19:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86801 * 119.99774 * 2 1
4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1
5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1
6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1
7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1
9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1
10 10 C 1.52998 * 109.46708 * 299.72635 * 9 7 2
11 11 C 1.52992 * 109.47451 * 299.99708 * 10 9 7
12 12 C 1.52998 * 109.47302 * 300.00160 * 11 10 9
13 13 N 1.46905 * 109.47646 * 179.97438 * 12 11 10
14 14 C 1.47472 * 111.00044 * 155.97204 * 13 12 11
15 15 C 1.53515 * 87.93036 * 221.29837 * 14 13 12
16 16 O 1.42896 * 114.16903 * 272.37720 * 15 14 13
17 17 C 1.42907 * 114.00119 * 243.83965 * 16 15 14
18 18 C 1.50702 * 109.47118 * 180.02562 * 17 16 15
19 19 C 1.38234 * 119.99534 * 269.72700 * 18 17 16
20 20 C 1.38244 * 119.99550 * 179.76837 * 19 18 17
21 21 C 1.38228 * 119.99951 * 0.50679 * 20 19 18
22 22 C 1.38238 * 120.00212 * 359.74555 * 21 20 19
23 23 C 1.38228 * 120.00103 * 90.00217 * 18 17 16
24 24 C 1.47481 * 110.99601 * 59.99864 * 13 12 11
25 25 C 1.53006 * 109.47141 * 60.00000 * 12 11 10
26 26 C 1.52998 * 109.47348 * 179.72505 * 9 7 2
27 27 H 0.96995 * 120.00207 * 0.02562 * 1 2 3
28 28 H 1.08998 * 109.47012 * 59.72028 * 9 7 2
29 29 H 1.09005 * 109.47120 * 60.00102 * 10 9 7
30 30 H 1.09002 * 109.46792 * 179.97438 * 10 9 7
31 31 H 1.09000 * 109.47344 * 180.02562 * 11 10 9
32 32 H 1.09002 * 109.46985 * 60.00287 * 11 10 9
33 33 H 1.09002 * 109.47204 * 299.99992 * 12 11 10
34 34 H 1.09005 * 113.47762 * 336.06444 * 14 13 12
35 35 H 1.09006 * 113.47815 * 106.53127 * 14 13 12
36 36 H 1.09006 * 114.34041 * 139.68889 * 15 14 13
37 37 H 1.08998 * 109.46797 * 300.00408 * 17 16 15
38 38 H 1.08998 * 109.47057 * 60.00227 * 17 16 15
39 39 H 1.07995 * 120.00371 * 359.97438 * 19 18 17
40 40 H 1.07997 * 119.99487 * 180.22819 * 20 19 18
41 41 H 1.07999 * 120.00440 * 179.72646 * 21 20 19
42 42 H 1.08002 * 120.00123 * 179.97438 * 22 21 20
43 43 H 1.08002 * 120.00201 * 0.02562 * 23 18 17
44 44 H 1.08998 * 113.47517 * 253.46908 * 24 13 12
45 45 H 1.08996 * 113.47357 * 23.94231 * 24 13 12
46 46 H 1.08995 * 109.47637 * 180.02562 * 25 12 11
47 47 H 1.09002 * 109.47078 * 59.99915 * 25 12 11
48 48 H 1.09002 * 109.47200 * 179.97438 * 26 9 7
49 49 H 1.09000 * 109.46986 * 300.00089 * 26 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0465 -1.4001
5 1 1.4465 2.6528 0.7000
6 1 3.5466 1.4403 0.7001
7 6 2.0046 -1.1939 0.0005
8 1 1.4647 -2.1293 0.0054
9 6 3.5117 -1.1939 0.0011
10 6 4.0220 -0.4789 -1.2515
11 6 3.5126 -1.2064 -2.4973
12 6 4.0226 -2.6488 -2.4900
13 7 3.5330 -3.3476 -3.6858
14 6 4.4074 -4.4845 -4.0288
15 6 4.2614 -4.0803 -5.5026
16 8 3.1294 -4.6559 -6.1576
17 6 3.4651 -5.5407 -7.2284
18 6 2.2024 -6.0860 -7.8442
19 6 1.6495 -7.2583 -7.3636
20 6 0.4885 -7.7559 -7.9253
21 6 -0.1137 -7.0870 -8.9744
22 6 0.4422 -5.9175 -9.4585
23 6 1.6002 -5.4171 -8.8933
24 6 4.0058 -2.6851 -4.9157
25 6 3.5122 -3.3639 -1.2373
26 6 4.0217 -2.6364 0.0086
27 1 -0.4850 0.8400 -0.0004
28 1 3.8746 -0.6756 0.8886
29 1 3.6586 0.5488 -1.2568
30 1 5.1120 -0.4785 -1.2509
31 1 3.8766 -0.6972 -3.3897
32 1 2.4226 -1.2064 -2.4977
33 1 5.1127 -2.6488 -2.4895
34 1 5.4238 -4.3807 -3.6487
35 1 3.9679 -5.4552 -3.7991
36 1 5.1806 -4.1589 -6.0832
37 1 4.0324 -4.9975 -7.9842
38 1 4.0673 -6.3640 -6.8442
39 1 2.1226 -7.7835 -6.5472
40 1 0.0545 -8.6698 -7.5474
41 1 -1.0182 -7.4781 -9.4162
42 1 -0.0281 -5.3950 -10.2784
43 1 2.0349 -4.5038 -9.2720
44 1 3.2259 -2.1307 -5.4376
45 1 4.9150 -2.1012 -4.7722
46 1 3.8759 -4.3914 -1.2318
47 1 2.4222 -3.3640 -1.2377
48 1 5.1117 -2.6363 0.0085
49 1 3.6580 -3.1457 0.9010
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001173339063.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:19:48
Heat of formation + Delta-G solvation = 16.847956 kcal
Electronic energy + Delta-G solvation = -26242.770666 eV
Core-core repulsion = 22749.726101 eV
Total energy + Delta-G solvation = -3493.044565 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-40.42244 -39.42043 -37.72441 -36.28917 -32.47882 -31.91762 -31.08592 -30.25180
-30.02110 -26.68876 -25.84363 -25.80889 -24.11943 -22.77175 -21.67886 -21.52264
-20.87852 -19.77587 -18.66606 -17.25642 -16.64906 -16.27362 -16.02644 -15.81937
-15.38474 -14.91490 -14.58930 -14.16990 -13.98706 -13.80156 -13.68816 -13.53597
-13.27080 -12.87379 -12.75516 -12.44753 -12.36965 -12.28797 -11.82240 -11.51205
-11.40157 -11.21267 -11.13475 -10.96942 -10.83298 -10.59521 -10.32667 -10.23665
-9.86279 -9.67758 -9.52904 -9.23349 -9.09556 -9.02341 -8.93187 -8.75441
-8.44808 -8.41211 -5.96467 -3.92989 1.07352 1.22585 3.29593 3.32101
3.42359 3.44445 3.83269 4.29027 4.39936 4.49223 4.62971 4.69254
4.81723 4.86708 4.92919 5.05287 5.10542 5.27592 5.29890 5.36410
5.38966 5.45458 5.47763 5.52540 5.66413 5.77354 5.83540 5.84769
5.91959 5.93785 6.13479 6.16624 6.25221 6.30904 6.31460 6.35007
6.40293 6.44041 6.46848 6.67733 6.73629 6.79212 6.79232 7.10268
7.15643 7.19503 7.27485 7.34973 7.53402 7.59983 7.90494 8.64659
9.08967 9.66689 11.16878
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.017712 B = 0.002764 C = 0.002622
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1580.462036 B =10128.531971 C =10678.147035
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.903 5.903
2 C 0.068 3.932
3 Si 0.883 3.117
4 H -0.280 1.280
5 H -0.300 1.300
6 H -0.268 1.268
7 C -0.499 4.499
8 H 0.076 0.924
9 C 0.007 3.993
10 C -0.115 4.115
11 C -0.099 4.099
12 C 0.060 3.940
13 N -0.449 5.449
14 C -0.019 4.019
15 C 0.058 3.942
16 O -0.340 6.340
17 C 0.100 3.900
18 C -0.088 4.088
19 C -0.097 4.097
20 C -0.124 4.124
21 C -0.116 4.116
22 C -0.125 4.125
23 C -0.098 4.098
24 C -0.001 4.001
25 C -0.094 4.094
26 C -0.095 4.095
27 H 0.261 0.739
28 H 0.025 0.975
29 H 0.046 0.954
30 H 0.032 0.968
31 H 0.036 0.964
32 H 0.090 0.910
33 H 0.034 0.966
34 H 0.072 0.928
35 H 0.086 0.914
36 H 0.077 0.923
37 H 0.056 0.944
38 H 0.057 0.943
39 H 0.123 0.877
40 H 0.123 0.877
41 H 0.121 0.879
42 H 0.122 0.878
43 H 0.122 0.878
44 H 0.090 0.910
45 H 0.076 0.924
46 H 0.037 0.963
47 H 0.084 0.916
48 H 0.032 0.968
49 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.051 -13.047 -18.299 24.228
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.542 5.542
2 C -0.132 4.132
3 Si 0.714 3.286
4 H -0.208 1.208
5 H -0.228 1.228
6 H -0.193 1.193
7 C -0.536 4.536
8 H 0.094 0.906
9 C -0.012 4.012
10 C -0.153 4.153
11 C -0.136 4.136
12 C -0.048 4.048
13 N -0.171 5.171
14 C -0.149 4.149
15 C -0.001 4.001
16 O -0.259 6.259
17 C 0.024 3.976
18 C -0.089 4.089
19 C -0.115 4.115
20 C -0.142 4.142
21 C -0.134 4.134
22 C -0.143 4.143
23 C -0.116 4.116
24 C -0.130 4.130
25 C -0.132 4.132
26 C -0.134 4.134
27 H 0.071 0.929
28 H 0.043 0.957
29 H 0.064 0.936
30 H 0.050 0.950
31 H 0.054 0.946
32 H 0.109 0.891
33 H 0.051 0.949
34 H 0.090 0.910
35 H 0.105 0.895
36 H 0.095 0.905
37 H 0.075 0.925
38 H 0.075 0.925
39 H 0.141 0.859
40 H 0.141 0.859
41 H 0.139 0.861
42 H 0.140 0.860
43 H 0.140 0.860
44 H 0.109 0.891
45 H 0.094 0.906
46 H 0.055 0.945
47 H 0.103 0.897
48 H 0.051 0.949
49 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 7.977 -12.982 -18.080 23.644
hybrid contribution 1.489 1.211 -0.088 1.922
sum 9.466 -11.771 -18.168 23.627
Atomic orbital electron populations
1.69902 1.06185 1.26614 1.51451 1.24993 0.94592 0.98746 0.94898
0.86919 0.79867 0.84126 0.77709 1.20754 1.22768 1.19334 1.21010
0.88616 0.94304 1.49719 0.90589 1.19209 0.97268 0.91915 0.92779
1.21822 0.97082 0.98823 0.97566 1.21419 1.03789 0.92324 0.96093
1.22218 0.95672 0.95512 0.91390 1.69098 1.42610 1.04498 1.00874
1.24346 0.96985 0.98741 0.94812 1.23212 0.88917 0.95242 0.92723
1.88115 1.29488 1.61233 1.47046 1.21388 0.93802 0.93082 0.89366
1.19594 0.97197 0.95516 0.96546 1.21088 0.95780 0.95781 0.98815
1.21159 0.95896 1.00316 0.96817 1.21200 0.99706 0.95614 0.96877
1.21150 0.96167 0.96543 1.00412 1.21070 0.95579 0.98994 0.95985
1.24030 1.00604 0.95457 0.92958 1.21349 1.03177 0.95941 0.92714
1.21362 0.97165 0.97866 0.96968 0.92893 0.95737 0.93626 0.94954
0.94564 0.89124 0.94851 0.91041 0.89531 0.90500 0.92542 0.92480
0.85885 0.85904 0.86068 0.85951 0.85958 0.89123 0.90609 0.94458
0.89706 0.94879 0.92670
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16
2 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16
3 Si 0.88 22.35 24.38 -169.99 -4.14 18.20 16
4 H -0.28 -6.94 6.87 56.52 0.39 -6.56 16
5 H -0.30 -7.66 7.11 56.52 0.40 -7.25 16
6 H -0.27 -6.51 6.52 56.52 0.37 -6.14 16
7 C -0.50 -13.85 7.19 -34.44 -0.25 -14.10 16
8 H 0.08 2.30 6.96 -52.49 -0.37 1.94 16
9 C 0.01 0.17 2.18 -91.77 -0.20 -0.03 16
10 C -0.11 -2.50 4.95 -26.74 -0.13 -2.64 16
11 C -0.10 -2.02 4.88 -26.74 -0.13 -2.15 16
12 C 0.06 1.09 1.60 -67.71 -0.11 0.98 16
13 N -0.45 -7.56 6.14 -236.62 -1.45 -9.01 16
14 C -0.02 -0.26 7.34 -7.55 -0.06 -0.31 16
15 C 0.06 0.70 4.66 -26.20 -0.12 0.57 16
16 O -0.34 -4.63 10.38 -35.23 -0.37 -5.00 16
17 C 0.10 1.01 5.90 36.01 0.21 1.22 16
18 C -0.09 -0.96 5.51 -104.63 -0.58 -1.54 16
19 C -0.10 -1.00 9.70 -39.58 -0.38 -1.38 16
20 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16
21 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16
22 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16
23 C -0.10 -1.00 9.70 -39.59 -0.38 -1.38 16
24 C 0.00 -0.02 6.29 -7.55 -0.05 -0.07 16
25 C -0.09 -1.83 5.19 -26.72 -0.14 -1.97 16
26 C -0.10 -1.93 5.41 -26.73 -0.14 -2.07 16
27 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16
28 H 0.02 0.60 7.18 -51.93 -0.37 0.22 16
29 H 0.05 1.06 3.31 -51.93 -0.17 0.89 16
30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.04 0.67 7.03 -51.93 -0.37 0.30 16
32 H 0.09 2.21 7.22 -51.93 -0.37 1.83 16
33 H 0.03 0.56 7.52 -51.93 -0.39 0.17 16
34 H 0.07 0.84 7.54 -51.93 -0.39 0.45 16
35 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16
36 H 0.08 0.70 7.88 -51.93 -0.41 0.29 16
37 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16
38 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16
39 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16
40 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16
41 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16
42 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16
43 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16
44 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16
45 H 0.08 0.95 7.66 -51.93 -0.40 0.56 16
46 H 0.04 0.65 8.04 -51.93 -0.42 0.23 16
47 H 0.08 1.94 6.62 -51.93 -0.34 1.59 16
48 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16
49 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16
LS Contribution 373.87 15.07 5.63 5.63
Total: -1.00 -32.00 373.87 -11.55 -43.56
By element:
Atomic # 1 Polarization: 9.62 SS G_CDS: -8.25 Total: 1.37 kcal
Atomic # 6 Polarization: -23.80 SS G_CDS: -3.75 Total: -27.54 kcal
Atomic # 7 Polarization: -35.54 SS G_CDS: -0.68 Total: -36.22 kcal
Atomic # 8 Polarization: -4.63 SS G_CDS: -0.37 Total: -5.00 kcal
Atomic # 14 Polarization: 22.35 SS G_CDS: -4.14 Total: 18.20 kcal
Total LS contribution 5.63 Total: 5.63 kcal
Total: -32.00 -11.55 -43.56 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001173339063.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.406 kcal
(2) G-P(sol) polarization free energy of solvation -32.004 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.402 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.554 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.558 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.848 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds