Wall clock time and date at job start Tue Mar 31 2020 12:19:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86801 * 119.99774 * 2 1
4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1
5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1
6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1
7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1
9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1
10 10 C 1.52998 * 109.46708 * 299.72635 * 9 7 2
11 11 C 1.52992 * 109.47451 * 299.99708 * 10 9 7
12 12 C 1.52998 * 109.47302 * 300.00160 * 11 10 9
13 13 N 1.46905 * 109.47646 * 179.97438 * 12 11 10
14 14 C 1.47472 * 111.00044 * 155.97204 * 13 12 11
15 15 C 1.53515 * 87.93036 * 221.29837 * 14 13 12
16 16 O 1.42896 * 114.16903 * 272.37720 * 15 14 13
17 17 C 1.42907 * 114.00119 * 243.83965 * 16 15 14
18 18 C 1.50702 * 109.47118 * 180.02562 * 17 16 15
19 19 C 1.38234 * 119.99534 * 269.72700 * 18 17 16
20 20 C 1.38244 * 119.99550 * 179.76837 * 19 18 17
21 21 C 1.38228 * 119.99951 * 0.50679 * 20 19 18
22 22 C 1.38238 * 120.00212 * 359.74555 * 21 20 19
23 23 C 1.38228 * 120.00103 * 90.00217 * 18 17 16
24 24 C 1.47481 * 110.99601 * 59.99864 * 13 12 11
25 25 C 1.53006 * 109.47141 * 60.00000 * 12 11 10
26 26 C 1.52998 * 109.47348 * 179.72505 * 9 7 2
27 27 H 0.96995 * 120.00207 * 0.02562 * 1 2 3
28 28 H 1.08998 * 109.47012 * 59.72028 * 9 7 2
29 29 H 1.09005 * 109.47120 * 60.00102 * 10 9 7
30 30 H 1.09002 * 109.46792 * 179.97438 * 10 9 7
31 31 H 1.09000 * 109.47344 * 180.02562 * 11 10 9
32 32 H 1.09002 * 109.46985 * 60.00287 * 11 10 9
33 33 H 1.09002 * 109.47204 * 299.99992 * 12 11 10
34 34 H 1.09005 * 113.47762 * 336.06444 * 14 13 12
35 35 H 1.09006 * 113.47815 * 106.53127 * 14 13 12
36 36 H 1.09006 * 114.34041 * 139.68889 * 15 14 13
37 37 H 1.08998 * 109.46797 * 300.00408 * 17 16 15
38 38 H 1.08998 * 109.47057 * 60.00227 * 17 16 15
39 39 H 1.07995 * 120.00371 * 359.97438 * 19 18 17
40 40 H 1.07997 * 119.99487 * 180.22819 * 20 19 18
41 41 H 1.07999 * 120.00440 * 179.72646 * 21 20 19
42 42 H 1.08002 * 120.00123 * 179.97438 * 22 21 20
43 43 H 1.08002 * 120.00201 * 0.02562 * 23 18 17
44 44 H 1.08998 * 113.47517 * 253.46908 * 24 13 12
45 45 H 1.08996 * 113.47357 * 23.94231 * 24 13 12
46 46 H 1.08995 * 109.47637 * 180.02562 * 25 12 11
47 47 H 1.09002 * 109.47078 * 59.99915 * 25 12 11
48 48 H 1.09002 * 109.47200 * 179.97438 * 26 9 7
49 49 H 1.09000 * 109.46986 * 300.00089 * 26 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0465 -1.4001
5 1 1.4465 2.6528 0.7000
6 1 3.5466 1.4403 0.7001
7 6 2.0046 -1.1939 0.0005
8 1 1.4647 -2.1293 0.0054
9 6 3.5117 -1.1939 0.0011
10 6 4.0220 -0.4789 -1.2515
11 6 3.5126 -1.2064 -2.4973
12 6 4.0226 -2.6488 -2.4900
13 7 3.5330 -3.3476 -3.6858
14 6 4.4074 -4.4845 -4.0288
15 6 4.2614 -4.0803 -5.5026
16 8 3.1294 -4.6559 -6.1576
17 6 3.4651 -5.5407 -7.2284
18 6 2.2024 -6.0860 -7.8442
19 6 1.6495 -7.2583 -7.3636
20 6 0.4885 -7.7559 -7.9253
21 6 -0.1137 -7.0870 -8.9744
22 6 0.4422 -5.9175 -9.4585
23 6 1.6002 -5.4171 -8.8933
24 6 4.0058 -2.6851 -4.9157
25 6 3.5122 -3.3639 -1.2373
26 6 4.0217 -2.6364 0.0086
27 1 -0.4850 0.8400 -0.0004
28 1 3.8746 -0.6756 0.8886
29 1 3.6586 0.5488 -1.2568
30 1 5.1120 -0.4785 -1.2509
31 1 3.8766 -0.6972 -3.3897
32 1 2.4226 -1.2064 -2.4977
33 1 5.1127 -2.6488 -2.4895
34 1 5.4238 -4.3807 -3.6487
35 1 3.9679 -5.4552 -3.7991
36 1 5.1806 -4.1589 -6.0832
37 1 4.0324 -4.9975 -7.9842
38 1 4.0673 -6.3640 -6.8442
39 1 2.1226 -7.7835 -6.5472
40 1 0.0545 -8.6698 -7.5474
41 1 -1.0182 -7.4781 -9.4162
42 1 -0.0281 -5.3950 -10.2784
43 1 2.0349 -4.5038 -9.2720
44 1 3.2259 -2.1307 -5.4376
45 1 4.9150 -2.1012 -4.7722
46 1 3.8759 -4.3914 -1.2318
47 1 2.4222 -3.3640 -1.2377
48 1 5.1117 -2.6363 0.0085
49 1 3.6580 -3.1457 0.9010
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001173339063.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:19:47
Heat of formation + Delta-G solvation = -3.862282 kcal
Electronic energy + Delta-G solvation = -26243.668729 eV
Core-core repulsion = 22749.726101 eV
Total energy + Delta-G solvation = -3493.942628 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-41.55173 -40.18279 -39.12765 -37.41911 -34.43962 -32.88245 -31.79664 -31.79075
-31.64754 -28.01582 -26.95235 -26.79619 -25.89037 -23.48490 -23.27924 -22.40996
-22.18115 -20.84802 -20.50854 -18.21167 -18.08633 -17.48479 -17.31098 -16.66793
-16.61911 -16.14399 -15.84620 -15.58771 -15.25004 -15.04765 -14.90893 -14.69788
-14.41025 -14.25413 -14.03956 -13.82849 -13.52169 -13.43539 -13.06189 -12.96135
-12.82063 -12.69844 -12.32025 -12.13813 -11.94834 -11.86291 -11.79143 -11.72118
-11.62690 -11.58022 -10.95928 -10.74794 -10.70305 -10.48072 -10.39557 -9.82308
-9.75668 -9.61589 -8.22062 -6.21842 0.33944 0.49807 1.29978 1.34846
1.45221 2.36246 2.50073 2.99992 3.14237 3.27012 3.45571 3.87649
3.88156 3.91456 3.94737 4.05720 4.15096 4.23928 4.29613 4.36407
4.38856 4.42954 4.50789 4.56096 4.57856 4.65301 4.67550 4.69505
4.74766 4.77354 4.77967 4.82815 4.88397 4.94707 5.04755 5.08393
5.14677 5.15193 5.41868 5.46414 5.49527 5.54507 5.57754 5.60557
5.66776 5.67410 5.74854 5.86385 6.09819 6.25424 6.40692 6.41722
6.83877 7.40954 8.95448
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.017712 B = 0.002764 C = 0.002622
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1580.462036 B =10128.531971 C =10678.147035
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.957 5.957
2 C 0.006 3.994
3 Si 0.946 3.054
4 H -0.271 1.271
5 H -0.305 1.305
6 H -0.243 1.243
7 C -0.490 4.490
8 H 0.030 0.970
9 C 0.001 3.999
10 C -0.115 4.115
11 C -0.094 4.094
12 C 0.070 3.930
13 N -0.491 5.491
14 C -0.016 4.016
15 C 0.071 3.929
16 O -0.374 6.374
17 C 0.099 3.901
18 C -0.109 4.109
19 C -0.114 4.114
20 C -0.135 4.135
21 C -0.124 4.124
22 C -0.134 4.134
23 C -0.114 4.114
24 C -0.005 4.005
25 C -0.089 4.089
26 C -0.092 4.092
27 H 0.260 0.740
28 H 0.024 0.976
29 H 0.030 0.970
30 H 0.073 0.927
31 H 0.058 0.942
32 H 0.036 0.964
33 H 0.066 0.934
34 H 0.098 0.902
35 H 0.077 0.923
36 H 0.117 0.883
37 H 0.075 0.925
38 H 0.072 0.928
39 H 0.129 0.871
40 H 0.140 0.860
41 H 0.143 0.857
42 H 0.142 0.858
43 H 0.132 0.868
44 H 0.069 0.931
45 H 0.099 0.901
46 H 0.060 0.940
47 H 0.033 0.967
48 H 0.072 0.928
49 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.788 -13.193 -19.742 26.969
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.599 5.599
2 C -0.190 4.190
3 Si 0.774 3.226
4 H -0.197 1.197
5 H -0.233 1.233
6 H -0.167 1.167
7 C -0.528 4.528
8 H 0.048 0.952
9 C -0.017 4.017
10 C -0.153 4.153
11 C -0.132 4.132
12 C -0.038 4.038
13 N -0.214 5.214
14 C -0.145 4.145
15 C 0.012 3.988
16 O -0.293 6.293
17 C 0.024 3.976
18 C -0.109 4.109
19 C -0.133 4.133
20 C -0.153 4.153
21 C -0.142 4.142
22 C -0.152 4.152
23 C -0.132 4.132
24 C -0.133 4.133
25 C -0.127 4.127
26 C -0.130 4.130
27 H 0.069 0.931
28 H 0.042 0.958
29 H 0.048 0.952
30 H 0.092 0.908
31 H 0.077 0.923
32 H 0.054 0.946
33 H 0.083 0.917
34 H 0.116 0.884
35 H 0.095 0.905
36 H 0.135 0.865
37 H 0.094 0.906
38 H 0.090 0.910
39 H 0.147 0.853
40 H 0.158 0.842
41 H 0.161 0.839
42 H 0.160 0.840
43 H 0.150 0.850
44 H 0.087 0.913
45 H 0.117 0.883
46 H 0.078 0.922
47 H 0.052 0.948
48 H 0.091 0.909
49 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 11.743 -13.151 -19.529 26.310
hybrid contribution 0.221 1.120 0.334 1.189
sum 11.963 -12.031 -19.195 25.618
Atomic orbital electron populations
1.70076 1.08283 1.27458 1.54106 1.25852 0.95285 1.02820 0.95012
0.85880 0.79268 0.79141 0.78300 1.19739 1.23342 1.16725 1.21268
0.91420 0.92364 1.47745 0.95190 1.19246 0.93910 0.94704 0.93891
1.21784 0.99454 0.97526 0.96540 1.21308 1.00398 0.94754 0.96722
1.22060 0.97003 0.93450 0.91284 1.69063 1.44707 1.06374 1.01263
1.24422 0.97444 0.96933 0.95728 1.23195 0.89824 0.93179 0.92553
1.88075 1.31124 1.61997 1.48150 1.21542 0.93812 0.93262 0.89019
1.19854 0.98010 0.95943 0.97080 1.21322 0.96442 0.96157 0.99332
1.21471 0.95763 1.01062 0.96958 1.21543 1.00384 0.95521 0.96704
1.21480 0.96021 0.96795 1.00879 1.21327 0.96125 0.99511 0.96208
1.24117 1.00732 0.96759 0.91735 1.21242 1.00004 0.97640 0.93812
1.21327 0.99354 0.95442 0.96901 0.93083 0.95839 0.95165 0.90845
0.92301 0.94553 0.91665 0.88404 0.90477 0.86501 0.90646 0.91025
0.85333 0.84218 0.83923 0.84046 0.85016 0.91256 0.88275 0.92172
0.94816 0.90930 0.93583
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.96 -62.51 13.96 21.45 0.30 -62.22 16
2 C 0.01 0.34 5.45 84.65 0.46 0.80 16
3 Si 0.95 46.54 24.38 68.60 1.67 48.21 16
4 H -0.27 -12.80 6.87 99.48 0.68 -12.12 16
5 H -0.31 -15.14 7.11 99.48 0.71 -14.43 16
6 H -0.24 -10.91 6.52 99.48 0.65 -10.26 16
7 C -0.49 -28.33 7.19 25.60 0.18 -28.15 16
8 H 0.03 1.96 6.96 -2.91 -0.02 1.94 16
9 C 0.00 0.06 2.18 -11.54 -0.03 0.03 16
10 C -0.12 -4.71 4.95 30.59 0.15 -4.56 16
11 C -0.09 -3.75 4.88 30.59 0.15 -3.60 16
12 C 0.07 2.39 1.60 44.92 0.07 2.46 16
13 N -0.49 -15.91 6.14 -902.91 -5.55 -21.46 16
14 C -0.02 -0.39 7.34 83.58 0.61 0.23 16
15 C 0.07 1.50 4.66 30.94 0.14 1.64 16
16 O -0.37 -9.71 10.38 -148.98 -1.55 -11.25 16
17 C 0.10 1.84 5.90 71.24 0.42 2.26 16
18 C -0.11 -2.29 5.51 -19.87 -0.11 -2.40 16
19 C -0.11 -2.34 9.70 22.27 0.22 -2.12 16
20 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16
21 C -0.12 -2.11 10.05 22.27 0.22 -1.89 16
22 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16
23 C -0.11 -2.24 9.70 22.27 0.22 -2.03 16
24 C 0.00 -0.12 6.29 83.57 0.53 0.41 16
25 C -0.09 -3.42 5.19 30.60 0.16 -3.26 16
26 C -0.09 -3.56 5.41 30.60 0.17 -3.39 16
27 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16
28 H 0.02 1.09 7.18 -2.39 -0.02 1.07 16
29 H 0.03 1.33 3.31 -2.38 -0.01 1.32 16
30 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16
31 H 0.06 2.04 7.03 -2.39 -0.02 2.03 16
32 H 0.04 1.83 7.22 -2.39 -0.02 1.81 16
33 H 0.07 1.83 7.52 -2.39 -0.02 1.81 16
34 H 0.10 1.81 7.54 -2.38 -0.02 1.79 16
35 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16
36 H 0.12 1.55 7.88 -2.38 -0.02 1.53 16
37 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16
38 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16
39 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16
40 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16
41 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16
42 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16
43 H 0.13 2.20 8.06 -2.91 -0.02 2.17 16
44 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16
45 H 0.10 2.08 7.66 -2.39 -0.02 2.06 16
46 H 0.06 2.00 8.04 -2.39 -0.02 1.98 16
47 H 0.03 1.62 6.62 -2.39 -0.02 1.60 16
48 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16
49 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16
Total: -1.00 -74.57 373.87 -0.28 -74.85
By element:
Atomic # 1 Polarization: 19.00 SS G_CDS: 0.83 Total: 19.83 kcal
Atomic # 6 Polarization: -51.98 SS G_CDS: 4.01 Total: -47.97 kcal
Atomic # 7 Polarization: -78.43 SS G_CDS: -5.25 Total: -83.67 kcal
Atomic # 8 Polarization: -9.71 SS G_CDS: -1.55 Total: -11.25 kcal
Atomic # 14 Polarization: 46.54 SS G_CDS: 1.67 Total: 48.21 kcal
Total: -74.57 -0.28 -74.85 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001173339063.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.988 kcal
(2) G-P(sol) polarization free energy of solvation -74.572 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.584 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.279 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.851 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.862 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds