Wall clock time and date at job start Tue Mar 31 2020 11:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46900 * 109.47028 * 2 1 4 4 C 1.46899 * 109.47038 * 240.00155 * 2 1 3 5 5 C 1.46896 * 109.47498 * 119.99978 * 2 1 3 6 6 C 1.53004 * 109.46950 * 65.86225 * 5 2 1 7 7 H 1.08995 * 109.46942 * 53.79033 * 6 5 2 8 8 C 1.50706 * 109.46937 * 173.79022 * 6 5 2 9 9 H 1.08003 * 119.99461 * 239.99915 * 8 6 5 10 10 C 1.37873 * 120.00175 * 59.99853 * 8 6 5 11 11 N 1.31518 * 119.99963 * 0.02562 * 10 8 6 12 12 Si 1.86802 * 119.99871 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47235 * 60.00198 * 12 10 8 14 14 H 1.48505 * 109.47035 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47234 * 300.00233 * 12 10 8 16 16 O 1.42896 * 109.47111 * 293.78844 * 6 5 2 17 17 C 1.42901 * 113.99637 * 149.99994 * 16 6 5 18 18 C 1.50706 * 109.47224 * 179.97438 * 17 16 6 19 19 N 1.31263 * 120.06224 * 269.98447 * 18 17 16 20 20 C 1.32576 * 122.77660 * 180.02562 * 19 18 17 21 21 C 1.36218 * 121.87319 * 359.41819 * 20 19 18 22 22 C 1.40650 * 118.66543 * 0.85377 * 21 20 19 23 23 C 1.40234 * 122.23241 * 179.12268 * 22 21 20 24 24 C 1.36220 * 119.47767 * 180.02562 * 23 22 21 25 25 C 1.39385 * 121.02623 * 359.97438 * 24 23 22 26 26 C 1.36169 * 121.08547 * 0.02562 * 25 24 23 27 27 C 1.40381 * 119.51752 * 0.25844 * 26 25 24 28 28 H 1.08998 * 109.47129 * 291.37897 * 1 2 3 29 29 H 1.08999 * 109.47343 * 51.37930 * 1 2 3 30 30 H 1.09000 * 109.47266 * 171.38281 * 1 2 3 31 31 H 1.09006 * 109.47152 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46969 * 299.99496 * 3 2 1 33 33 H 1.08998 * 109.47189 * 60.00359 * 3 2 1 34 34 H 1.08999 * 109.47014 * 299.99695 * 4 2 1 35 35 H 1.09002 * 109.47521 * 59.99533 * 4 2 1 36 36 H 1.09006 * 109.47299 * 179.97438 * 4 2 1 37 37 H 1.08997 * 109.47217 * 305.86902 * 5 2 1 38 38 H 1.08995 * 109.47616 * 185.86268 * 5 2 1 39 39 H 0.96995 * 119.99811 * 180.02562 * 11 10 8 40 40 H 1.09006 * 109.47026 * 60.00256 * 17 16 6 41 41 H 1.08999 * 109.47637 * 300.00103 * 17 16 6 42 42 H 1.07997 * 119.06071 * 180.02562 * 20 19 18 43 43 H 1.08003 * 120.66256 * 179.97438 * 21 20 19 44 44 H 1.07995 * 120.26183 * 0.04416 * 23 22 21 45 45 H 1.07998 * 119.48482 * 180.02562 * 24 23 22 46 46 H 1.07998 * 119.45712 * 179.97438 * 25 24 23 47 47 H 1.08005 * 120.23622 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9586 -0.6925 -1.1995 5 6 1.9587 -0.6925 1.1994 6 6 1.5726 -2.1712 1.1279 7 1 1.9254 -2.5938 0.1871 8 6 2.2035 -2.9114 2.2791 9 1 2.8892 -3.7236 2.0879 10 6 1.9055 -2.5516 3.5762 11 7 1.0701 -1.5629 3.8090 12 14 2.6871 -3.4696 5.0031 13 1 4.1643 -3.3400 4.9253 14 1 2.2060 -2.8942 6.2848 15 1 2.3118 -4.9046 4.9335 16 8 0.1511 -2.2965 1.2029 17 6 -0.3700 -3.4301 0.5061 18 6 -1.8696 -3.4636 0.6517 19 7 -2.4185 -4.1056 1.6565 20 6 -3.7305 -4.1701 1.8362 21 6 -4.6036 -3.5587 0.9881 22 6 -4.0906 -2.8559 -0.1170 23 6 -4.9216 -2.2145 -1.0469 24 6 -4.3644 -1.5499 -2.0973 25 6 -2.9814 -1.4970 -2.2619 26 6 -2.1443 -2.1082 -1.3786 27 6 -2.6821 -2.8078 -0.2869 28 1 -0.3633 0.3746 0.9569 29 1 -0.3634 0.6414 -0.8029 30 1 -0.3634 -1.0160 -0.1540 31 1 3.0486 1.3850 -0.0005 32 1 1.5953 1.8988 -0.8900 33 1 1.5953 1.8988 0.8900 34 1 1.5953 -1.7201 -1.1994 35 1 1.5952 -0.1787 -2.0895 36 1 3.0486 -0.6921 -1.1997 37 1 1.5121 -0.2429 2.0863 38 1 3.0436 -0.6025 1.2534 39 1 0.8607 -1.3095 4.7216 40 1 0.0558 -4.3417 0.9254 41 1 -0.1087 -3.3593 -0.5498 42 1 -4.1176 -4.7149 2.6845 43 1 -5.6689 -3.6243 1.1529 44 1 -5.9948 -2.2470 -0.9309 45 1 -5.0043 -1.0556 -2.8132 46 1 -2.5668 -0.9633 -3.1043 47 1 -1.0747 -2.0588 -1.5197 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223140659.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:53 Heat of formation + Delta-G solvation = 122.247532 kcal Electronic energy + Delta-G solvation = -27980.068581 eV Core-core repulsion = 24439.824313 eV Total energy + Delta-G solvation = -3540.244268 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.181 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.25816 -41.82002 -38.57547 -38.10491 -34.93753 -33.83500 -32.20085 -31.50900 -30.81466 -30.36528 -30.10007 -27.73112 -27.36445 -24.90125 -24.66416 -24.46134 -22.55219 -22.10593 -19.06013 -18.82585 -18.71469 -18.45453 -18.15490 -17.88371 -17.26494 -16.83598 -16.01815 -15.86159 -15.81742 -15.40019 -15.13631 -14.98395 -14.68185 -14.65272 -14.57642 -14.21094 -14.08226 -13.94547 -13.81521 -13.65099 -13.46646 -13.18993 -13.02330 -12.98637 -12.78320 -12.38847 -12.12524 -12.00594 -11.91023 -11.26627 -11.16551 -10.95686 -10.22090 -10.05623 -10.02152 -9.76472 -9.03337 -7.60572 -5.80684 -0.63839 -0.04661 0.37707 0.89759 2.07497 2.21918 2.32931 2.35152 2.36719 2.38204 2.44381 2.86742 3.13375 3.15920 3.21943 3.26967 3.44211 3.45608 3.58697 3.60666 3.68988 3.73163 3.73430 3.75254 3.79120 3.79653 3.88407 3.92401 4.09194 4.15751 4.24845 4.29872 4.35219 4.39584 4.50043 4.58086 4.70645 4.77775 4.81443 4.98003 5.05751 5.12856 5.29744 5.32797 5.44310 5.67127 5.83441 6.31242 6.38774 6.71357 7.23749 7.33914 8.03019 9.42476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.271 5.271 3 C -0.041 4.041 4 C -0.048 4.048 5 C -0.004 4.004 6 C 0.199 3.801 7 H 0.033 0.967 8 C -0.567 4.567 9 H 0.073 0.927 10 C 0.095 3.905 11 N -0.859 5.859 12 Si 0.900 3.100 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.268 1.268 16 O -0.364 6.364 17 C 0.112 3.888 18 C 0.180 3.820 19 N -0.459 5.459 20 C 0.087 3.913 21 C -0.159 4.159 22 C -0.025 4.025 23 C -0.105 4.105 24 C -0.104 4.104 25 C -0.119 4.119 26 C -0.097 4.097 27 C -0.098 4.098 28 H 0.118 0.882 29 H 0.095 0.905 30 H 0.137 0.863 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.157 0.843 38 H 0.118 0.882 39 H 0.276 0.724 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.155 0.845 43 H 0.139 0.861 44 H 0.132 0.868 45 H 0.127 0.873 46 H 0.125 0.875 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.690 10.200 -14.963 18.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 N 0.071 4.929 3 C -0.183 4.183 4 C -0.190 4.190 5 C -0.122 4.122 6 C 0.143 3.857 7 H 0.051 0.949 8 C -0.603 4.603 9 H 0.091 0.909 10 C -0.115 4.115 11 N -0.492 5.492 12 Si 0.726 3.274 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.193 1.193 16 O -0.284 6.284 17 C 0.035 3.965 18 C 0.028 3.972 19 N -0.167 5.167 20 C -0.057 4.057 21 C -0.179 4.179 22 C -0.030 4.030 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.137 4.137 26 C -0.117 4.117 27 C -0.101 4.101 28 H 0.137 0.863 29 H 0.114 0.886 30 H 0.154 0.846 31 H 0.131 0.869 32 H 0.126 0.874 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.174 0.826 38 H 0.136 0.864 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.172 0.828 43 H 0.157 0.843 44 H 0.150 0.850 45 H 0.145 0.855 46 H 0.143 0.857 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.472 9.986 -14.012 17.213 hybrid contribution -0.253 -0.221 0.282 0.438 sum -0.725 9.766 -13.730 16.865 Atomic orbital electron populations 1.24490 0.76463 1.10126 1.07663 1.46407 1.15535 1.14328 1.16654 1.23998 1.04871 0.81420 1.08010 1.24063 1.05129 1.02444 0.87333 1.24976 1.03125 0.97828 0.86243 1.19979 0.80241 0.88347 0.97116 0.94922 1.21174 1.29822 1.19316 0.90032 0.90936 1.24966 0.92866 0.94137 0.99517 1.69619 1.30610 1.26558 1.22458 0.86466 0.79592 0.80853 0.80489 1.19639 1.20573 1.19320 1.88114 1.23172 1.42691 1.74414 1.20956 0.87208 0.93751 0.94611 1.21376 0.95490 0.91387 0.88969 1.67278 1.13623 1.16362 1.19477 1.22297 0.88106 0.96713 0.98552 1.21973 1.01473 0.99074 0.95377 1.18181 0.92593 0.96920 0.95302 1.21041 0.99819 0.97214 0.94199 1.20991 0.95229 0.98362 0.97718 1.20902 0.93656 1.00027 0.99134 1.20928 0.99475 0.97331 0.93930 1.18797 0.93427 1.00298 0.97549 0.86314 0.88606 0.84562 0.86871 0.87376 0.86599 0.86443 0.87310 0.86560 0.82567 0.86436 0.91438 0.90376 0.93510 0.82750 0.84332 0.85004 0.85481 0.85664 0.85683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 0.36 7.24 60.06 0.44 0.79 16 2 N -0.27 2.48 0.05 -395.63 -0.02 2.46 16 3 C -0.04 0.48 8.00 60.06 0.48 0.96 16 4 C -0.05 0.53 7.50 60.06 0.45 0.98 16 5 C 0.00 0.01 3.56 -3.82 -0.01 0.00 16 6 C 0.20 0.28 1.82 -27.88 -0.05 0.23 16 7 H 0.03 -0.05 5.49 -51.93 -0.29 -0.33 16 8 C -0.57 -4.34 8.89 -34.44 -0.31 -4.64 16 9 H 0.07 0.64 7.81 -52.48 -0.41 0.23 16 10 C 0.10 0.93 5.24 -17.82 -0.09 0.84 16 11 N -0.86 -8.49 10.94 55.43 0.61 -7.89 16 12 Si 0.90 8.99 29.54 -169.99 -5.02 3.97 16 13 H -0.27 -2.70 7.11 56.52 0.40 -2.30 16 14 H -0.28 -3.10 7.11 56.52 0.40 -2.70 16 15 H -0.27 -3.04 7.11 56.52 0.40 -2.64 16 16 O -0.36 -0.99 6.40 -35.23 -0.23 -1.22 16 17 C 0.11 0.26 5.09 36.01 0.18 0.44 16 18 C 0.18 0.67 6.49 -82.02 -0.53 0.14 16 19 N -0.46 -2.80 10.22 -9.39 -0.10 -2.89 16 20 C 0.09 0.32 11.07 -17.96 -0.20 0.12 16 21 C -0.16 -0.27 9.88 -39.40 -0.39 -0.66 16 22 C -0.02 -0.04 5.75 -106.82 -0.61 -0.65 16 23 C -0.10 0.06 9.81 -39.56 -0.39 -0.33 16 24 C -0.10 0.22 9.95 -39.88 -0.40 -0.18 16 25 C -0.12 0.38 9.94 -39.90 -0.40 -0.02 16 26 C -0.10 0.22 8.11 -39.52 -0.32 -0.10 16 27 C -0.10 -0.14 5.74 -106.86 -0.61 -0.75 16 28 H 0.12 -0.64 7.94 -51.93 -0.41 -1.05 16 29 H 0.10 -1.04 8.02 -51.93 -0.42 -1.45 16 30 H 0.14 -0.73 2.22 -51.93 -0.12 -0.85 16 31 H 0.11 -1.42 8.11 -51.93 -0.42 -1.84 16 32 H 0.11 -1.50 8.08 -51.93 -0.42 -1.92 16 33 H 0.12 -1.27 8.14 -51.93 -0.42 -1.69 16 34 H 0.12 -1.13 5.86 -51.93 -0.30 -1.44 16 35 H 0.11 -1.49 8.14 -51.93 -0.42 -1.91 16 36 H 0.12 -1.39 8.14 -51.93 -0.42 -1.81 16 37 H 0.16 0.05 6.08 -51.93 -0.32 -0.27 16 38 H 0.12 -0.48 8.07 -51.93 -0.42 -0.89 16 39 H 0.28 2.97 8.31 -40.82 -0.34 2.64 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.05 -0.08 6.43 -51.93 -0.33 -0.42 16 42 H 0.16 0.25 8.06 -52.49 -0.42 -0.17 16 43 H 0.14 -0.13 8.06 -52.48 -0.42 -0.55 16 44 H 0.13 -0.30 8.06 -52.49 -0.42 -0.73 16 45 H 0.13 -0.52 8.06 -52.49 -0.42 -0.94 16 46 H 0.13 -0.75 8.06 -52.49 -0.42 -1.17 16 47 H 0.13 -0.66 5.14 -52.48 -0.27 -0.93 16 LS Contribution 362.96 15.07 5.47 5.47 Total: 0.00 -18.99 362.96 -9.11 -28.10 By element: Atomic # 1 Polarization: -18.09 SS G_CDS: -7.06 Total: -25.15 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -2.77 Total: -2.85 kcal Atomic # 7 Polarization: -8.81 SS G_CDS: 0.49 Total: -8.32 kcal Atomic # 8 Polarization: -0.99 SS G_CDS: -0.23 Total: -1.22 kcal Atomic # 14 Polarization: 8.99 SS G_CDS: -5.02 Total: 3.97 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -18.99 -9.11 -28.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223140659.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.347 kcal (2) G-P(sol) polarization free energy of solvation -18.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds