Wall clock time and date at job start Tue Mar 31 2020 11:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46900 * 109.47028 * 2 1 4 4 C 1.46899 * 109.47038 * 240.00155 * 2 1 3 5 5 C 1.46896 * 109.47498 * 119.99978 * 2 1 3 6 6 C 1.53004 * 109.46950 * 65.86225 * 5 2 1 7 7 H 1.08995 * 109.46942 * 53.79033 * 6 5 2 8 8 C 1.50706 * 109.46937 * 173.79022 * 6 5 2 9 9 H 1.08003 * 119.99461 * 239.99915 * 8 6 5 10 10 C 1.37873 * 120.00175 * 59.99853 * 8 6 5 11 11 N 1.31518 * 119.99963 * 0.02562 * 10 8 6 12 12 Si 1.86802 * 119.99871 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47235 * 60.00198 * 12 10 8 14 14 H 1.48505 * 109.47035 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47234 * 300.00233 * 12 10 8 16 16 O 1.42896 * 109.47111 * 293.78844 * 6 5 2 17 17 C 1.42901 * 113.99637 * 149.99994 * 16 6 5 18 18 C 1.50706 * 109.47224 * 179.97438 * 17 16 6 19 19 N 1.31263 * 120.06224 * 269.98447 * 18 17 16 20 20 C 1.32576 * 122.77660 * 180.02562 * 19 18 17 21 21 C 1.36218 * 121.87319 * 359.41819 * 20 19 18 22 22 C 1.40650 * 118.66543 * 0.85377 * 21 20 19 23 23 C 1.40234 * 122.23241 * 179.12268 * 22 21 20 24 24 C 1.36220 * 119.47767 * 180.02562 * 23 22 21 25 25 C 1.39385 * 121.02623 * 359.97438 * 24 23 22 26 26 C 1.36169 * 121.08547 * 0.02562 * 25 24 23 27 27 C 1.40381 * 119.51752 * 0.25844 * 26 25 24 28 28 H 1.08998 * 109.47129 * 291.37897 * 1 2 3 29 29 H 1.08999 * 109.47343 * 51.37930 * 1 2 3 30 30 H 1.09000 * 109.47266 * 171.38281 * 1 2 3 31 31 H 1.09006 * 109.47152 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46969 * 299.99496 * 3 2 1 33 33 H 1.08998 * 109.47189 * 60.00359 * 3 2 1 34 34 H 1.08999 * 109.47014 * 299.99695 * 4 2 1 35 35 H 1.09002 * 109.47521 * 59.99533 * 4 2 1 36 36 H 1.09006 * 109.47299 * 179.97438 * 4 2 1 37 37 H 1.08997 * 109.47217 * 305.86902 * 5 2 1 38 38 H 1.08995 * 109.47616 * 185.86268 * 5 2 1 39 39 H 0.96995 * 119.99811 * 180.02562 * 11 10 8 40 40 H 1.09006 * 109.47026 * 60.00256 * 17 16 6 41 41 H 1.08999 * 109.47637 * 300.00103 * 17 16 6 42 42 H 1.07997 * 119.06071 * 180.02562 * 20 19 18 43 43 H 1.08003 * 120.66256 * 179.97438 * 21 20 19 44 44 H 1.07995 * 120.26183 * 0.04416 * 23 22 21 45 45 H 1.07998 * 119.48482 * 180.02562 * 24 23 22 46 46 H 1.07998 * 119.45712 * 179.97438 * 25 24 23 47 47 H 1.08005 * 120.23622 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9586 -0.6925 -1.1995 5 6 1.9587 -0.6925 1.1994 6 6 1.5726 -2.1712 1.1279 7 1 1.9254 -2.5938 0.1871 8 6 2.2035 -2.9114 2.2791 9 1 2.8892 -3.7236 2.0879 10 6 1.9055 -2.5516 3.5762 11 7 1.0701 -1.5629 3.8090 12 14 2.6871 -3.4696 5.0031 13 1 4.1643 -3.3400 4.9253 14 1 2.2060 -2.8942 6.2848 15 1 2.3118 -4.9046 4.9335 16 8 0.1511 -2.2965 1.2029 17 6 -0.3700 -3.4301 0.5061 18 6 -1.8696 -3.4636 0.6517 19 7 -2.4185 -4.1056 1.6565 20 6 -3.7305 -4.1701 1.8362 21 6 -4.6036 -3.5587 0.9881 22 6 -4.0906 -2.8559 -0.1170 23 6 -4.9216 -2.2145 -1.0469 24 6 -4.3644 -1.5499 -2.0973 25 6 -2.9814 -1.4970 -2.2619 26 6 -2.1443 -2.1082 -1.3786 27 6 -2.6821 -2.8078 -0.2869 28 1 -0.3633 0.3746 0.9569 29 1 -0.3634 0.6414 -0.8029 30 1 -0.3634 -1.0160 -0.1540 31 1 3.0486 1.3850 -0.0005 32 1 1.5953 1.8988 -0.8900 33 1 1.5953 1.8988 0.8900 34 1 1.5953 -1.7201 -1.1994 35 1 1.5952 -0.1787 -2.0895 36 1 3.0486 -0.6921 -1.1997 37 1 1.5121 -0.2429 2.0863 38 1 3.0436 -0.6025 1.2534 39 1 0.8607 -1.3095 4.7216 40 1 0.0558 -4.3417 0.9254 41 1 -0.1087 -3.3593 -0.5498 42 1 -4.1176 -4.7149 2.6845 43 1 -5.6689 -3.6243 1.1529 44 1 -5.9948 -2.2470 -0.9309 45 1 -5.0043 -1.0556 -2.8132 46 1 -2.5668 -0.9633 -3.1043 47 1 -1.0747 -2.0588 -1.5197 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223140659.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:52 Heat of formation + Delta-G solvation = 116.889902 kcal Electronic energy + Delta-G solvation = -27980.300905 eV Core-core repulsion = 24439.824313 eV Total energy + Delta-G solvation = -3540.476592 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.181 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.65441 -41.80178 -38.60057 -38.12818 -35.24456 -34.08009 -32.19503 -31.47260 -30.72254 -29.48794 -29.36493 -27.76224 -27.57880 -24.65026 -24.56752 -24.42268 -22.47080 -22.07797 -19.03849 -18.76859 -18.61577 -18.02871 -17.81951 -17.44312 -17.22578 -16.88558 -16.47723 -15.88725 -15.75819 -15.42298 -15.15705 -14.82501 -14.60064 -14.43483 -13.97978 -13.84712 -13.63542 -13.29371 -13.23636 -13.16697 -13.13387 -13.08207 -12.95424 -12.93209 -12.88291 -12.70329 -12.63897 -12.50448 -12.03708 -11.73264 -11.28774 -11.00742 -10.77717 -10.37083 -10.01636 -10.00506 -9.00667 -8.32138 -6.46359 -0.61050 -0.02492 0.93645 1.09055 1.33019 1.41451 1.48247 2.10502 2.31423 2.74613 2.93538 3.13218 3.18384 3.20835 3.26722 3.55404 3.65049 3.76591 3.87880 4.02384 4.03818 4.20380 4.23500 4.25517 4.32199 4.34885 4.37763 4.45586 4.48921 4.50044 4.55153 4.56935 4.70109 4.73722 4.80935 4.83396 4.85305 4.86807 4.97866 5.04808 5.12142 5.17472 5.36907 5.48234 5.53619 5.63120 5.68476 5.94203 5.96806 6.37952 6.82450 7.10495 7.35529 8.66361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.257 5.257 3 C -0.043 4.043 4 C -0.058 4.058 5 C 0.017 3.983 6 C 0.193 3.807 7 H 0.067 0.933 8 C -0.569 4.569 9 H 0.053 0.947 10 C 0.073 3.927 11 N -0.866 5.866 12 Si 0.910 3.090 13 H -0.267 1.267 14 H -0.298 1.298 15 H -0.294 1.294 16 O -0.370 6.370 17 C 0.114 3.886 18 C 0.162 3.838 19 N -0.514 5.514 20 C 0.052 3.948 21 C -0.156 4.156 22 C -0.049 4.049 23 C -0.123 4.123 24 C -0.099 4.099 25 C -0.105 4.105 26 C -0.097 4.097 27 C -0.108 4.108 28 H 0.088 0.912 29 H 0.142 0.858 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.144 0.856 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.150 0.850 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.130 0.870 39 H 0.261 0.739 40 H 0.036 0.964 41 H 0.095 0.905 42 H 0.155 0.845 43 H 0.158 0.842 44 H 0.143 0.857 45 H 0.153 0.847 46 H 0.168 0.832 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.498 13.286 -20.215 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 N 0.086 4.914 3 C -0.184 4.184 4 C -0.198 4.198 5 C -0.104 4.104 6 C 0.137 3.863 7 H 0.085 0.915 8 C -0.607 4.607 9 H 0.072 0.928 10 C -0.134 4.134 11 N -0.501 5.501 12 Si 0.739 3.261 13 H -0.192 1.192 14 H -0.224 1.224 15 H -0.220 1.220 16 O -0.289 6.289 17 C 0.037 3.963 18 C 0.010 3.990 19 N -0.224 5.224 20 C -0.091 4.091 21 C -0.176 4.176 22 C -0.054 4.054 23 C -0.141 4.141 24 C -0.118 4.118 25 C -0.123 4.123 26 C -0.116 4.116 27 C -0.110 4.110 28 H 0.106 0.894 29 H 0.160 0.840 30 H 0.133 0.867 31 H 0.143 0.857 32 H 0.162 0.838 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.168 0.832 36 H 0.147 0.853 37 H 0.140 0.860 38 H 0.148 0.852 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.112 0.888 42 H 0.173 0.827 43 H 0.176 0.824 44 H 0.160 0.840 45 H 0.170 0.830 46 H 0.186 0.814 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.270 13.075 -19.274 23.292 hybrid contribution -0.336 -1.187 1.751 2.142 sum -0.606 11.888 -17.523 21.184 Atomic orbital electron populations 1.24413 0.77079 1.09508 1.07792 1.45972 1.14902 1.15504 1.15049 1.24204 1.05736 0.79268 1.09191 1.24357 1.06180 1.01995 0.87287 1.24084 1.03420 0.95153 0.87777 1.20069 0.79202 0.91030 0.96037 0.91499 1.21570 1.28542 1.18854 0.91700 0.92824 1.25099 0.93777 0.94616 0.99906 1.69720 1.32075 1.27394 1.20950 0.86400 0.79752 0.79220 0.80713 1.19234 1.22432 1.22031 1.88138 1.23337 1.42185 1.75241 1.21015 0.86592 0.91908 0.96788 1.21669 0.96243 0.91799 0.89285 1.67176 1.15008 1.18620 1.21642 1.22400 0.88068 0.98704 0.99884 1.22214 1.02125 0.98147 0.95088 1.18505 0.93407 0.97647 0.95854 1.21243 1.00339 0.97889 0.94585 1.21449 0.96461 0.96863 0.97019 1.21392 0.92966 0.98549 0.99386 1.21266 1.01467 0.96360 0.92514 1.18991 0.93193 1.00609 0.98255 0.89360 0.84007 0.86683 0.85657 0.83758 0.87906 0.87826 0.83157 0.85300 0.86030 0.85207 0.92922 0.94515 0.88775 0.82730 0.82401 0.83951 0.82967 0.81421 0.82428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 0.83 7.24 127.69 0.92 1.75 16 2 N -0.26 5.41 0.05 ******* -0.07 5.34 16 3 C -0.04 1.17 8.00 127.69 1.02 2.19 16 4 C -0.06 1.54 7.50 127.69 0.96 2.50 16 5 C 0.02 -0.11 3.56 86.31 0.31 0.20 16 6 C 0.19 0.61 1.82 29.85 0.05 0.66 16 7 H 0.07 -0.27 5.49 -2.39 -0.01 -0.29 16 8 C -0.57 -10.00 8.89 25.60 0.23 -9.77 16 9 H 0.05 1.08 7.81 -2.91 -0.02 1.06 16 10 C 0.07 1.67 5.24 84.65 0.44 2.11 16 11 N -0.87 -20.10 10.94 21.45 0.23 -19.87 16 12 Si 0.91 21.64 29.54 68.60 2.03 23.67 16 13 H -0.27 -6.01 7.11 99.48 0.71 -5.31 16 14 H -0.30 -7.82 7.11 99.48 0.71 -7.12 16 15 H -0.29 -8.03 7.11 99.48 0.71 -7.32 16 16 O -0.37 -2.45 6.40 -148.98 -0.95 -3.40 16 17 C 0.11 0.68 5.09 71.24 0.36 1.04 16 18 C 0.16 1.55 6.49 43.17 0.28 1.83 16 19 N -0.51 -8.41 10.22 -183.62 -1.88 -10.29 16 20 C 0.05 0.59 11.07 84.11 0.93 1.52 16 21 C -0.16 -0.90 9.88 22.39 0.22 -0.68 16 22 C -0.05 -0.19 5.75 -21.29 -0.12 -0.31 16 23 C -0.12 0.28 9.81 22.28 0.22 0.50 16 24 C -0.10 0.75 9.95 22.08 0.22 0.97 16 25 C -0.11 1.15 9.94 22.06 0.22 1.37 16 26 C -0.10 0.72 8.11 22.31 0.18 0.90 16 27 C -0.11 -0.32 5.74 -21.31 -0.12 -0.44 16 28 H 0.09 -0.94 7.94 -2.39 -0.02 -0.96 16 29 H 0.14 -3.82 8.02 -2.39 -0.02 -3.84 16 30 H 0.12 -1.48 2.22 -2.39 -0.01 -1.49 16 31 H 0.12 -3.59 8.11 -2.38 -0.02 -3.61 16 32 H 0.14 -4.81 8.08 -2.39 -0.02 -4.83 16 33 H 0.10 -2.41 8.14 -2.39 -0.02 -2.43 16 34 H 0.10 -2.41 5.86 -2.39 -0.01 -2.43 16 35 H 0.15 -5.14 8.14 -2.39 -0.02 -5.16 16 36 H 0.13 -3.66 8.14 -2.38 -0.02 -3.68 16 37 H 0.12 0.24 6.08 -2.39 -0.01 0.22 16 38 H 0.13 -1.18 8.07 -2.39 -0.02 -1.20 16 39 H 0.26 6.70 8.31 -92.71 -0.77 5.93 16 40 H 0.04 0.50 8.14 -2.38 -0.02 0.48 16 41 H 0.09 -0.46 6.43 -2.39 -0.02 -0.47 16 42 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 43 H 0.16 -0.01 8.06 -2.91 -0.02 -0.04 16 44 H 0.14 -0.77 8.06 -2.91 -0.02 -0.80 16 45 H 0.15 -1.92 8.06 -2.91 -0.02 -1.94 16 46 H 0.17 -3.19 8.06 -2.91 -0.02 -3.21 16 47 H 0.16 -2.34 5.14 -2.91 -0.01 -2.36 16 Total: 0.00 -54.39 362.96 6.65 -47.74 By element: Atomic # 1 Polarization: -50.49 SS G_CDS: 0.96 Total: -49.53 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 6.33 Total: 6.33 kcal Atomic # 7 Polarization: -23.10 SS G_CDS: -1.71 Total: -24.81 kcal Atomic # 8 Polarization: -2.45 SS G_CDS: -0.95 Total: -3.40 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: 2.03 Total: 23.67 kcal Total: -54.39 6.65 -47.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223140659.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.629 kcal (2) G-P(sol) polarization free energy of solvation -54.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds