Wall clock time and date at job start Tue Mar 31 2020 12:06:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30827 * 1
3 3 Si 1.86798 * 119.99973 * 2 1
4 4 H 1.48499 * 109.47534 * 240.00297 * 3 2 1
5 5 H 1.48501 * 109.46833 * 0.02562 * 3 2 1
6 6 H 1.48500 * 109.47339 * 119.99731 * 3 2 1
7 7 C 1.39947 * 120.00244 * 180.02562 * 2 1 3
8 8 H 1.07995 * 120.00058 * 177.33165 * 7 2 1
9 9 C 1.41397 * 119.99658 * 357.31917 * 7 2 1
10 10 C 1.40739 * 120.24367 * 33.83237 * 9 7 2
11 11 C 1.37594 * 119.74478 * 179.97438 * 10 9 7
12 12 C 1.38658 * 120.25063 * 359.97438 * 11 10 9
13 13 C 1.38623 * 120.49907 * 359.76851 * 12 11 10
14 14 C 1.37632 * 120.24576 * 0.51120 * 13 12 11
15 15 C 1.50702 * 120.12922 * 179.74548 * 14 13 12
16 16 N 1.46908 * 109.47036 * 266.05879 * 15 14 13
17 17 C 1.46846 * 110.99740 * 183.25109 * 16 15 14
18 18 C 1.53037 * 109.52049 * 185.83964 * 17 16 15
19 19 C 1.53127 * 109.27539 * 300.81906 * 18 17 16
20 20 O 1.42908 * 109.51918 * 177.55913 * 19 18 17
21 21 C 1.42901 * 113.99537 * 150.00144 * 20 19 18
22 22 C 1.53779 * 113.61116 * 210.00054 * 21 20 19
23 23 C 1.53779 * 87.17153 * 220.06177 * 22 21 20
24 24 C 1.53773 * 87.08327 * 25.39114 * 23 22 21
25 25 C 1.53123 * 109.16125 * 57.65887 * 19 18 17
26 26 C 1.46843 * 110.99689 * 307.46166 * 16 15 14
27 27 H 0.96997 * 120.00246 * 0.02562 * 1 2 3
28 28 H 1.07997 * 120.12770 * 359.95182 * 10 9 7
29 29 H 1.08001 * 119.87392 * 179.97438 * 11 10 9
30 30 H 1.07991 * 119.75162 * 180.02562 * 12 11 10
31 31 H 1.07997 * 119.87264 * 180.25041 * 13 12 11
32 32 H 1.08999 * 109.47417 * 146.05533 * 15 14 13
33 33 H 1.08997 * 109.46961 * 26.05379 * 15 14 13
34 34 H 1.08994 * 109.46446 * 65.82304 * 17 16 15
35 35 H 1.08999 * 109.45307 * 305.84829 * 17 16 15
36 36 H 1.08994 * 109.50284 * 180.88208 * 18 17 16
37 37 H 1.09000 * 109.50613 * 60.75513 * 18 17 16
38 38 H 1.08998 * 109.52486 * 297.68575 * 19 18 17
39 39 H 1.09000 * 112.91106 * 341.25303 * 21 20 19
40 40 H 1.08999 * 113.61528 * 105.47504 * 22 21 20
41 41 H 1.09004 * 113.61522 * 334.65039 * 22 21 20
42 42 H 1.09004 * 113.61625 * 139.94321 * 23 22 21
43 43 H 1.09009 * 113.61617 * 270.83974 * 23 22 21
44 44 H 1.09006 * 113.61505 * 89.11624 * 24 23 22
45 45 H 1.09004 * 113.61881 * 219.93659 * 24 23 22
46 46 H 1.08999 * 109.50277 * 62.28376 * 25 19 18
47 47 H 1.08991 * 109.50224 * 182.40197 * 25 19 18
48 48 H 1.09002 * 109.46547 * 294.17786 * 26 16 15
49 49 H 1.08999 * 109.46556 * 54.15298 * 26 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2423 1.6177 0.0000
4 1 3.0960 1.6965 -1.2125
5 1 1.2772 2.7464 0.0006
6 1 3.0960 1.6965 1.2125
7 6 2.0081 -1.2119 -0.0005
8 1 3.0871 -1.2124 -0.0441
9 6 1.3022 -2.4358 0.0562
10 6 0.0468 -2.5597 -0.5677
11 6 -0.6309 -3.7556 -0.5066
12 6 -0.0813 -4.8363 0.1661
13 6 1.1569 -4.7273 0.7797
14 6 1.8500 -3.5391 0.7362
15 6 3.1934 -3.4218 1.4091
16 7 3.0162 -2.8887 2.7665
17 6 4.3126 -2.6880 3.4264
18 6 4.0867 -2.2725 4.8818
19 6 3.2693 -0.9781 4.9168
20 8 3.0067 -0.6158 6.2741
21 6 2.8851 0.7921 6.4866
22 6 3.3260 1.2436 7.8889
23 6 2.1256 2.2047 7.8737
24 6 1.4643 1.2376 6.8777
25 6 1.9448 -1.2001 4.1811
26 6 2.2329 -1.6469 2.7460
27 1 -0.4850 0.8400 -0.0004
28 1 -0.3832 -1.7192 -1.0922
29 1 -1.5947 -3.8528 -0.9842
30 1 -0.6200 -5.7713 0.2087
31 1 1.5774 -5.5768 1.2974
32 1 3.8300 -2.7489 0.8347
33 1 3.6597 -4.4055 1.4631
34 1 4.8672 -1.9063 2.9073
35 1 4.8820 -3.6171 3.3981
36 1 5.0489 -2.1084 5.3669
37 1 3.5441 -3.0598 5.4051
38 1 3.8290 -0.1804 4.4286
39 1 3.3214 1.3821 5.6806
40 1 4.2909 1.7504 7.9012
41 1 3.2492 0.4611 8.6439
42 1 1.6061 2.2697 8.8297
43 1 2.3539 3.1817 7.4476
44 1 0.8778 0.4525 7.3551
45 1 0.9250 1.7394 6.0742
46 1 1.3687 -1.9706 4.6934
47 1 1.3769 -0.2700 4.1657
48 1 2.7971 -0.8699 2.2301
49 1 1.2918 -1.8195 2.2238
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001235514331.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:06:50
Heat of formation + Delta-G solvation = -8.866685 kcal
Electronic energy + Delta-G solvation = -27474.778292 eV
Core-core repulsion = 23980.618656 eV
Total energy + Delta-G solvation = -3494.159635 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 1.32 seconds
Orbital eigenvalues (eV)
-39.56117 -38.61724 -37.29076 -35.55062 -33.65415 -32.29222 -30.41949 -29.51319
-29.28621 -25.93949 -25.66946 -24.97702 -24.22103 -22.58836 -22.06613 -20.87489
-20.01485 -19.42755 -18.95161 -17.14062 -17.05040 -15.84396 -15.50402 -15.24518
-14.74061 -14.48445 -14.40910 -14.04977 -13.90329 -13.42964 -13.26321 -13.03147
-12.64650 -12.50013 -12.45360 -12.24201 -11.94857 -11.57137 -11.43170 -11.34657
-11.26921 -11.16577 -11.01834 -10.92526 -10.70824 -10.60805 -10.55195 -10.40245
-10.32150 -10.13731 -9.99854 -9.54857 -9.35990 -9.17693 -8.97887 -7.58575
-7.28073 -7.21421 -6.64672 -4.39777 2.74629 2.96955 3.01990 3.03667
3.18849 3.81409 3.90917 4.54711 4.58352 4.63642 4.75054 4.81498
4.85998 5.13823 5.27299 5.30517 5.46692 5.58106 5.63704 5.66058
5.71697 5.75605 5.83189 5.89976 5.92807 6.03089 6.07880 6.11816
6.16725 6.19617 6.28196 6.31594 6.41989 6.42339 6.48290 6.49609
6.55292 6.75720 6.93464 7.10957 7.19283 7.26950 7.40381 7.52796
7.63189 7.85372 7.88288 7.94898 8.05709 8.10339 8.30322 8.62914
8.89331 8.95464 10.25624
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.012275 B = 0.004672 C = 0.003958
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2280.421196 B = 5991.761729 C = 7072.727162
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.808 5.808
2 C 0.077 3.923
3 Si 0.898 3.102
4 H -0.266 1.266
5 H -0.278 1.278
6 H -0.267 1.267
7 C -0.460 4.460
8 H 0.072 0.928
9 C 0.113 3.887
10 C -0.153 4.153
11 C -0.113 4.113
12 C -0.230 4.230
13 C -0.082 4.082
14 C -0.182 4.182
15 C 0.123 3.877
16 N -0.532 5.532
17 C 0.057 3.943
18 C -0.108 4.108
19 C 0.089 3.911
20 O -0.369 6.369
21 C 0.063 3.937
22 C -0.138 4.138
23 C -0.143 4.143
24 C -0.157 4.157
25 C -0.136 4.136
26 C 0.066 3.934
27 H 0.277 0.723
28 H 0.128 0.872
29 H 0.086 0.914
30 H 0.086 0.914
31 H 0.089 0.911
32 H 0.034 0.966
33 H 0.056 0.944
34 H 0.026 0.974
35 H 0.071 0.929
36 H 0.063 0.937
37 H 0.076 0.924
38 H 0.052 0.948
39 H 0.083 0.917
40 H 0.067 0.933
41 H 0.088 0.912
42 H 0.071 0.929
43 H 0.079 0.921
44 H 0.089 0.911
45 H 0.068 0.932
46 H 0.070 0.930
47 H 0.058 0.942
48 H 0.041 0.959
49 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.668 3.001 9.995 11.876
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.436 5.436
2 C -0.139 4.139
3 Si 0.723 3.277
4 H -0.191 1.191
5 H -0.203 1.203
6 H -0.192 1.192
7 C -0.492 4.492
8 H 0.090 0.910
9 C 0.111 3.889
10 C -0.173 4.173
11 C -0.131 4.131
12 C -0.249 4.249
13 C -0.101 4.101
14 C -0.184 4.184
15 C -0.004 4.004
16 N -0.256 5.256
17 C -0.072 4.072
18 C -0.145 4.145
19 C 0.032 3.968
20 O -0.288 6.288
21 C 0.005 3.995
22 C -0.175 4.175
23 C -0.180 4.180
24 C -0.195 4.195
25 C -0.174 4.174
26 C -0.061 4.061
27 H 0.089 0.911
28 H 0.145 0.855
29 H 0.104 0.896
30 H 0.104 0.896
31 H 0.107 0.893
32 H 0.052 0.948
33 H 0.074 0.926
34 H 0.045 0.955
35 H 0.090 0.910
36 H 0.082 0.918
37 H 0.095 0.905
38 H 0.070 0.930
39 H 0.101 0.899
40 H 0.086 0.914
41 H 0.107 0.893
42 H 0.090 0.910
43 H 0.098 0.902
44 H 0.107 0.893
45 H 0.087 0.913
46 H 0.089 0.911
47 H 0.077 0.923
48 H 0.059 0.941
49 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges 5.207 2.700 10.413 11.951
hybrid contribution 0.692 1.640 -0.613 1.883
sum 5.899 4.340 9.799 12.234
Atomic orbital electron populations
1.69736 1.07035 1.28628 1.38177 1.25711 0.94762 1.00491 0.92898
0.86521 0.80147 0.81223 0.79781 1.19069 1.20299 1.19183 1.19345
0.94139 0.89975 1.45697 0.91021 1.17460 0.92031 0.91306 0.88105
1.21583 0.97397 0.96184 1.02111 1.20776 0.98195 0.94279 0.99885
1.20451 0.97992 0.98007 1.08462 1.20376 0.94785 0.96182 0.98773
1.19592 0.98029 0.95626 1.05163 1.20614 0.95266 0.97563 0.86940
1.62119 1.15042 1.29538 1.18937 1.21992 0.91941 0.99656 0.93611
1.21603 0.99248 0.96829 0.96869 1.22343 0.96166 0.96531 0.81790
1.87928 1.91691 1.21704 1.27479 1.23758 0.96237 0.82671 0.96821
1.23212 0.98191 0.98781 0.97354 1.22656 0.97735 0.97562 1.00057
1.23513 0.97511 0.99104 0.99360 1.22171 0.96706 1.01286 0.97245
1.22323 1.00682 0.89544 0.93599 0.91134 0.85466 0.89560 0.89605
0.89308 0.94810 0.92576 0.95548 0.91045 0.91846 0.90503 0.92971
0.89930 0.91409 0.89327 0.90983 0.90215 0.89272 0.91328 0.91093
0.92309 0.94114 0.87587
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.81 -19.99 10.60 55.55 0.59 -19.40 16
2 C 0.08 1.82 5.37 -17.34 -0.09 1.73 16
3 Si 0.90 18.33 29.56 -169.99 -5.02 13.31 16
4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16
5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16
6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16
7 C -0.46 -11.25 5.18 -37.74 -0.20 -11.44 16
8 H 0.07 1.73 6.50 -52.49 -0.34 1.39 16
9 C 0.11 2.81 4.24 -106.82 -0.45 2.36 16
10 C -0.15 -3.86 8.67 -38.87 -0.34 -4.19 16
11 C -0.11 -2.61 10.02 -39.66 -0.40 -3.01 16
12 C -0.23 -5.10 10.05 -39.28 -0.39 -5.49 16
13 C -0.08 -1.82 9.66 -39.66 -0.38 -2.21 16
14 C -0.18 -4.17 4.60 -103.91 -0.48 -4.65 16
15 C 0.12 2.47 5.04 -4.97 -0.03 2.44 16
16 N -0.53 -10.18 4.75 -236.11 -1.12 -11.30 16
17 C 0.06 0.90 5.46 -3.83 -0.02 0.88 16
18 C -0.11 -1.60 5.75 -26.65 -0.15 -1.75 16
19 C 0.09 1.42 2.67 -26.60 -0.07 1.35 16
20 O -0.37 -5.67 10.01 -35.23 -0.35 -6.02 16
21 C 0.06 0.82 4.28 -25.83 -0.11 0.71 16
22 C -0.14 -1.46 7.91 -25.92 -0.20 -1.66 16
23 C -0.14 -1.39 8.08 -25.92 -0.21 -1.60 16
24 C -0.16 -1.88 7.92 -25.83 -0.20 -2.09 16
25 C -0.14 -2.47 5.72 -26.65 -0.15 -2.62 16
26 C 0.07 1.35 3.86 -3.84 -0.01 1.34 16
27 H 0.28 6.41 8.30 -40.82 -0.34 6.08 16
28 H 0.13 3.34 6.13 -52.49 -0.32 3.01 16
29 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16
30 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16
31 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16
32 H 0.03 0.70 6.51 -51.93 -0.34 0.36 16
33 H 0.06 1.03 8.06 -51.93 -0.42 0.61 16
34 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16
35 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16
36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16
37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16
38 H 0.05 0.83 7.42 -51.93 -0.39 0.44 16
39 H 0.08 1.05 7.46 -51.93 -0.39 0.67 16
40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
41 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16
42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
43 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16
44 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16
45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
46 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16
47 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16
48 H 0.04 0.89 6.84 -51.93 -0.36 0.53 16
49 H 0.11 2.58 5.20 -51.93 -0.27 2.31 16
LS Contribution 374.99 15.07 5.65 5.65
Total: -1.00 -25.33 374.99 -12.45 -37.78
By element:
Atomic # 1 Polarization: 18.19 SS G_CDS: -8.29 Total: 9.90 kcal
Atomic # 6 Polarization: -26.01 SS G_CDS: -3.90 Total: -29.91 kcal
Atomic # 7 Polarization: -30.17 SS G_CDS: -0.53 Total: -30.70 kcal
Atomic # 8 Polarization: -5.67 SS G_CDS: -0.35 Total: -6.02 kcal
Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.31 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -25.33 -12.45 -37.78 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001235514331.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.914 kcal
(2) G-P(sol) polarization free energy of solvation -25.330 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.584 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.450 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.781 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.867 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.32 seconds