Wall clock time and date at job start Tue Mar 31 2020 12:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48499 * 109.47534 * 240.00297 * 3 2 1 5 5 H 1.48501 * 109.46833 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47339 * 119.99731 * 3 2 1 7 7 C 1.39947 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00058 * 177.33165 * 7 2 1 9 9 C 1.41397 * 119.99658 * 357.31917 * 7 2 1 10 10 C 1.40739 * 120.24367 * 33.83237 * 9 7 2 11 11 C 1.37594 * 119.74478 * 179.97438 * 10 9 7 12 12 C 1.38658 * 120.25063 * 359.97438 * 11 10 9 13 13 C 1.38623 * 120.49907 * 359.76851 * 12 11 10 14 14 C 1.37632 * 120.24576 * 0.51120 * 13 12 11 15 15 C 1.50702 * 120.12922 * 179.74548 * 14 13 12 16 16 N 1.46908 * 109.47036 * 266.05879 * 15 14 13 17 17 C 1.46846 * 110.99740 * 183.25109 * 16 15 14 18 18 C 1.53037 * 109.52049 * 185.83964 * 17 16 15 19 19 C 1.53127 * 109.27539 * 300.81906 * 18 17 16 20 20 O 1.42908 * 109.51918 * 177.55913 * 19 18 17 21 21 C 1.42901 * 113.99537 * 150.00144 * 20 19 18 22 22 C 1.53779 * 113.61116 * 210.00054 * 21 20 19 23 23 C 1.53779 * 87.17153 * 220.06177 * 22 21 20 24 24 C 1.53773 * 87.08327 * 25.39114 * 23 22 21 25 25 C 1.53123 * 109.16125 * 57.65887 * 19 18 17 26 26 C 1.46843 * 110.99689 * 307.46166 * 16 15 14 27 27 H 0.96997 * 120.00246 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.12770 * 359.95182 * 10 9 7 29 29 H 1.08001 * 119.87392 * 179.97438 * 11 10 9 30 30 H 1.07991 * 119.75162 * 180.02562 * 12 11 10 31 31 H 1.07997 * 119.87264 * 180.25041 * 13 12 11 32 32 H 1.08999 * 109.47417 * 146.05533 * 15 14 13 33 33 H 1.08997 * 109.46961 * 26.05379 * 15 14 13 34 34 H 1.08994 * 109.46446 * 65.82304 * 17 16 15 35 35 H 1.08999 * 109.45307 * 305.84829 * 17 16 15 36 36 H 1.08994 * 109.50284 * 180.88208 * 18 17 16 37 37 H 1.09000 * 109.50613 * 60.75513 * 18 17 16 38 38 H 1.08998 * 109.52486 * 297.68575 * 19 18 17 39 39 H 1.09000 * 112.91106 * 341.25303 * 21 20 19 40 40 H 1.08999 * 113.61528 * 105.47504 * 22 21 20 41 41 H 1.09004 * 113.61522 * 334.65039 * 22 21 20 42 42 H 1.09004 * 113.61625 * 139.94321 * 23 22 21 43 43 H 1.09009 * 113.61617 * 270.83974 * 23 22 21 44 44 H 1.09006 * 113.61505 * 89.11624 * 24 23 22 45 45 H 1.09004 * 113.61881 * 219.93659 * 24 23 22 46 46 H 1.08999 * 109.50277 * 62.28376 * 25 19 18 47 47 H 1.08991 * 109.50224 * 182.40197 * 25 19 18 48 48 H 1.09002 * 109.46547 * 294.17786 * 26 16 15 49 49 H 1.08999 * 109.46556 * 54.15298 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0081 -1.2119 -0.0005 8 1 3.0871 -1.2124 -0.0441 9 6 1.3022 -2.4358 0.0562 10 6 0.0468 -2.5597 -0.5677 11 6 -0.6309 -3.7556 -0.5066 12 6 -0.0813 -4.8363 0.1661 13 6 1.1569 -4.7273 0.7797 14 6 1.8500 -3.5391 0.7362 15 6 3.1934 -3.4218 1.4091 16 7 3.0162 -2.8887 2.7665 17 6 4.3126 -2.6880 3.4264 18 6 4.0867 -2.2725 4.8818 19 6 3.2693 -0.9781 4.9168 20 8 3.0067 -0.6158 6.2741 21 6 2.8851 0.7921 6.4866 22 6 3.3260 1.2436 7.8889 23 6 2.1256 2.2047 7.8737 24 6 1.4643 1.2376 6.8777 25 6 1.9448 -1.2001 4.1811 26 6 2.2329 -1.6469 2.7460 27 1 -0.4850 0.8400 -0.0004 28 1 -0.3832 -1.7192 -1.0922 29 1 -1.5947 -3.8528 -0.9842 30 1 -0.6200 -5.7713 0.2087 31 1 1.5774 -5.5768 1.2974 32 1 3.8300 -2.7489 0.8347 33 1 3.6597 -4.4055 1.4631 34 1 4.8672 -1.9063 2.9073 35 1 4.8820 -3.6171 3.3981 36 1 5.0489 -2.1084 5.3669 37 1 3.5441 -3.0598 5.4051 38 1 3.8290 -0.1804 4.4286 39 1 3.3214 1.3821 5.6806 40 1 4.2909 1.7504 7.9012 41 1 3.2492 0.4611 8.6439 42 1 1.6061 2.2697 8.8297 43 1 2.3539 3.1817 7.4476 44 1 0.8778 0.4525 7.3551 45 1 0.9250 1.7394 6.0742 46 1 1.3687 -1.9706 4.6934 47 1 1.3769 -0.2700 4.1657 48 1 2.7971 -0.8699 2.2301 49 1 1.2918 -1.8195 2.2238 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235514331.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:50 Heat of formation + Delta-G solvation = -8.866685 kcal Electronic energy + Delta-G solvation = -27474.778292 eV Core-core repulsion = 23980.618656 eV Total energy + Delta-G solvation = -3494.159635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -39.56117 -38.61724 -37.29076 -35.55062 -33.65415 -32.29222 -30.41949 -29.51319 -29.28621 -25.93949 -25.66946 -24.97702 -24.22103 -22.58836 -22.06613 -20.87489 -20.01485 -19.42755 -18.95161 -17.14062 -17.05040 -15.84396 -15.50402 -15.24518 -14.74061 -14.48445 -14.40910 -14.04977 -13.90329 -13.42964 -13.26321 -13.03147 -12.64650 -12.50013 -12.45360 -12.24201 -11.94857 -11.57137 -11.43170 -11.34657 -11.26921 -11.16577 -11.01834 -10.92526 -10.70824 -10.60805 -10.55195 -10.40245 -10.32150 -10.13731 -9.99854 -9.54857 -9.35990 -9.17693 -8.97887 -7.58575 -7.28073 -7.21421 -6.64672 -4.39777 2.74629 2.96955 3.01990 3.03667 3.18849 3.81409 3.90917 4.54711 4.58352 4.63642 4.75054 4.81498 4.85998 5.13823 5.27299 5.30517 5.46692 5.58106 5.63704 5.66058 5.71697 5.75605 5.83189 5.89976 5.92807 6.03089 6.07880 6.11816 6.16725 6.19617 6.28196 6.31594 6.41989 6.42339 6.48290 6.49609 6.55292 6.75720 6.93464 7.10957 7.19283 7.26950 7.40381 7.52796 7.63189 7.85372 7.88288 7.94898 8.05709 8.10339 8.30322 8.62914 8.89331 8.95464 10.25624 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012275 B = 0.004672 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.421196 B = 5991.761729 C = 7072.727162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.077 3.923 3 Si 0.898 3.102 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.460 4.460 8 H 0.072 0.928 9 C 0.113 3.887 10 C -0.153 4.153 11 C -0.113 4.113 12 C -0.230 4.230 13 C -0.082 4.082 14 C -0.182 4.182 15 C 0.123 3.877 16 N -0.532 5.532 17 C 0.057 3.943 18 C -0.108 4.108 19 C 0.089 3.911 20 O -0.369 6.369 21 C 0.063 3.937 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.157 4.157 25 C -0.136 4.136 26 C 0.066 3.934 27 H 0.277 0.723 28 H 0.128 0.872 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.034 0.966 33 H 0.056 0.944 34 H 0.026 0.974 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.058 0.942 48 H 0.041 0.959 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.668 3.001 9.995 11.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.139 4.139 3 Si 0.723 3.277 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.492 4.492 8 H 0.090 0.910 9 C 0.111 3.889 10 C -0.173 4.173 11 C -0.131 4.131 12 C -0.249 4.249 13 C -0.101 4.101 14 C -0.184 4.184 15 C -0.004 4.004 16 N -0.256 5.256 17 C -0.072 4.072 18 C -0.145 4.145 19 C 0.032 3.968 20 O -0.288 6.288 21 C 0.005 3.995 22 C -0.175 4.175 23 C -0.180 4.180 24 C -0.195 4.195 25 C -0.174 4.174 26 C -0.061 4.061 27 H 0.089 0.911 28 H 0.145 0.855 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.077 0.923 48 H 0.059 0.941 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.207 2.700 10.413 11.951 hybrid contribution 0.692 1.640 -0.613 1.883 sum 5.899 4.340 9.799 12.234 Atomic orbital electron populations 1.69736 1.07035 1.28628 1.38177 1.25711 0.94762 1.00491 0.92898 0.86521 0.80147 0.81223 0.79781 1.19069 1.20299 1.19183 1.19345 0.94139 0.89975 1.45697 0.91021 1.17460 0.92031 0.91306 0.88105 1.21583 0.97397 0.96184 1.02111 1.20776 0.98195 0.94279 0.99885 1.20451 0.97992 0.98007 1.08462 1.20376 0.94785 0.96182 0.98773 1.19592 0.98029 0.95626 1.05163 1.20614 0.95266 0.97563 0.86940 1.62119 1.15042 1.29538 1.18937 1.21992 0.91941 0.99656 0.93611 1.21603 0.99248 0.96829 0.96869 1.22343 0.96166 0.96531 0.81790 1.87928 1.91691 1.21704 1.27479 1.23758 0.96237 0.82671 0.96821 1.23212 0.98191 0.98781 0.97354 1.22656 0.97735 0.97562 1.00057 1.23513 0.97511 0.99104 0.99360 1.22171 0.96706 1.01286 0.97245 1.22323 1.00682 0.89544 0.93599 0.91134 0.85466 0.89560 0.89605 0.89308 0.94810 0.92576 0.95548 0.91045 0.91846 0.90503 0.92971 0.89930 0.91409 0.89327 0.90983 0.90215 0.89272 0.91328 0.91093 0.92309 0.94114 0.87587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -19.99 10.60 55.55 0.59 -19.40 16 2 C 0.08 1.82 5.37 -17.34 -0.09 1.73 16 3 Si 0.90 18.33 29.56 -169.99 -5.02 13.31 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.46 -11.25 5.18 -37.74 -0.20 -11.44 16 8 H 0.07 1.73 6.50 -52.49 -0.34 1.39 16 9 C 0.11 2.81 4.24 -106.82 -0.45 2.36 16 10 C -0.15 -3.86 8.67 -38.87 -0.34 -4.19 16 11 C -0.11 -2.61 10.02 -39.66 -0.40 -3.01 16 12 C -0.23 -5.10 10.05 -39.28 -0.39 -5.49 16 13 C -0.08 -1.82 9.66 -39.66 -0.38 -2.21 16 14 C -0.18 -4.17 4.60 -103.91 -0.48 -4.65 16 15 C 0.12 2.47 5.04 -4.97 -0.03 2.44 16 16 N -0.53 -10.18 4.75 -236.11 -1.12 -11.30 16 17 C 0.06 0.90 5.46 -3.83 -0.02 0.88 16 18 C -0.11 -1.60 5.75 -26.65 -0.15 -1.75 16 19 C 0.09 1.42 2.67 -26.60 -0.07 1.35 16 20 O -0.37 -5.67 10.01 -35.23 -0.35 -6.02 16 21 C 0.06 0.82 4.28 -25.83 -0.11 0.71 16 22 C -0.14 -1.46 7.91 -25.92 -0.20 -1.66 16 23 C -0.14 -1.39 8.08 -25.92 -0.21 -1.60 16 24 C -0.16 -1.88 7.92 -25.83 -0.20 -2.09 16 25 C -0.14 -2.47 5.72 -26.65 -0.15 -2.62 16 26 C 0.07 1.35 3.86 -3.84 -0.01 1.34 16 27 H 0.28 6.41 8.30 -40.82 -0.34 6.08 16 28 H 0.13 3.34 6.13 -52.49 -0.32 3.01 16 29 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.03 0.70 6.51 -51.93 -0.34 0.36 16 33 H 0.06 1.03 8.06 -51.93 -0.42 0.61 16 34 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.83 7.42 -51.93 -0.39 0.44 16 39 H 0.08 1.05 7.46 -51.93 -0.39 0.67 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 44 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 48 H 0.04 0.89 6.84 -51.93 -0.36 0.53 16 49 H 0.11 2.58 5.20 -51.93 -0.27 2.31 16 LS Contribution 374.99 15.07 5.65 5.65 Total: -1.00 -25.33 374.99 -12.45 -37.78 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -8.29 Total: 9.90 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: -3.90 Total: -29.91 kcal Atomic # 7 Polarization: -30.17 SS G_CDS: -0.53 Total: -30.70 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.35 Total: -6.02 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.31 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -25.33 -12.45 -37.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235514331.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.914 kcal (2) G-P(sol) polarization free energy of solvation -25.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds