Wall clock time and date at job start Tue Mar 31 2020 12:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48499 * 109.47534 * 240.00297 * 3 2 1 5 5 H 1.48501 * 109.46833 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47339 * 119.99731 * 3 2 1 7 7 C 1.39947 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00058 * 177.33165 * 7 2 1 9 9 C 1.41397 * 119.99658 * 357.31917 * 7 2 1 10 10 C 1.40739 * 120.24367 * 33.83237 * 9 7 2 11 11 C 1.37594 * 119.74478 * 179.97438 * 10 9 7 12 12 C 1.38658 * 120.25063 * 359.97438 * 11 10 9 13 13 C 1.38623 * 120.49907 * 359.76851 * 12 11 10 14 14 C 1.37632 * 120.24576 * 0.51120 * 13 12 11 15 15 C 1.50702 * 120.12922 * 179.74548 * 14 13 12 16 16 N 1.46908 * 109.47036 * 266.05879 * 15 14 13 17 17 C 1.46846 * 110.99740 * 183.25109 * 16 15 14 18 18 C 1.53037 * 109.52049 * 185.83964 * 17 16 15 19 19 C 1.53127 * 109.27539 * 300.81906 * 18 17 16 20 20 O 1.42908 * 109.51918 * 177.55913 * 19 18 17 21 21 C 1.42901 * 113.99537 * 150.00144 * 20 19 18 22 22 C 1.53779 * 113.61116 * 210.00054 * 21 20 19 23 23 C 1.53779 * 87.17153 * 220.06177 * 22 21 20 24 24 C 1.53773 * 87.08327 * 25.39114 * 23 22 21 25 25 C 1.53123 * 109.16125 * 57.65887 * 19 18 17 26 26 C 1.46843 * 110.99689 * 307.46166 * 16 15 14 27 27 H 0.96997 * 120.00246 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.12770 * 359.95182 * 10 9 7 29 29 H 1.08001 * 119.87392 * 179.97438 * 11 10 9 30 30 H 1.07991 * 119.75162 * 180.02562 * 12 11 10 31 31 H 1.07997 * 119.87264 * 180.25041 * 13 12 11 32 32 H 1.08999 * 109.47417 * 146.05533 * 15 14 13 33 33 H 1.08997 * 109.46961 * 26.05379 * 15 14 13 34 34 H 1.08994 * 109.46446 * 65.82304 * 17 16 15 35 35 H 1.08999 * 109.45307 * 305.84829 * 17 16 15 36 36 H 1.08994 * 109.50284 * 180.88208 * 18 17 16 37 37 H 1.09000 * 109.50613 * 60.75513 * 18 17 16 38 38 H 1.08998 * 109.52486 * 297.68575 * 19 18 17 39 39 H 1.09000 * 112.91106 * 341.25303 * 21 20 19 40 40 H 1.08999 * 113.61528 * 105.47504 * 22 21 20 41 41 H 1.09004 * 113.61522 * 334.65039 * 22 21 20 42 42 H 1.09004 * 113.61625 * 139.94321 * 23 22 21 43 43 H 1.09009 * 113.61617 * 270.83974 * 23 22 21 44 44 H 1.09006 * 113.61505 * 89.11624 * 24 23 22 45 45 H 1.09004 * 113.61881 * 219.93659 * 24 23 22 46 46 H 1.08999 * 109.50277 * 62.28376 * 25 19 18 47 47 H 1.08991 * 109.50224 * 182.40197 * 25 19 18 48 48 H 1.09002 * 109.46547 * 294.17786 * 26 16 15 49 49 H 1.08999 * 109.46556 * 54.15298 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0081 -1.2119 -0.0005 8 1 3.0871 -1.2124 -0.0441 9 6 1.3022 -2.4358 0.0562 10 6 0.0468 -2.5597 -0.5677 11 6 -0.6309 -3.7556 -0.5066 12 6 -0.0813 -4.8363 0.1661 13 6 1.1569 -4.7273 0.7797 14 6 1.8500 -3.5391 0.7362 15 6 3.1934 -3.4218 1.4091 16 7 3.0162 -2.8887 2.7665 17 6 4.3126 -2.6880 3.4264 18 6 4.0867 -2.2725 4.8818 19 6 3.2693 -0.9781 4.9168 20 8 3.0067 -0.6158 6.2741 21 6 2.8851 0.7921 6.4866 22 6 3.3260 1.2436 7.8889 23 6 2.1256 2.2047 7.8737 24 6 1.4643 1.2376 6.8777 25 6 1.9448 -1.2001 4.1811 26 6 2.2329 -1.6469 2.7460 27 1 -0.4850 0.8400 -0.0004 28 1 -0.3832 -1.7192 -1.0922 29 1 -1.5947 -3.8528 -0.9842 30 1 -0.6200 -5.7713 0.2087 31 1 1.5774 -5.5768 1.2974 32 1 3.8300 -2.7489 0.8347 33 1 3.6597 -4.4055 1.4631 34 1 4.8672 -1.9063 2.9073 35 1 4.8820 -3.6171 3.3981 36 1 5.0489 -2.1084 5.3669 37 1 3.5441 -3.0598 5.4051 38 1 3.8290 -0.1804 4.4286 39 1 3.3214 1.3821 5.6806 40 1 4.2909 1.7504 7.9012 41 1 3.2492 0.4611 8.6439 42 1 1.6061 2.2697 8.8297 43 1 2.3539 3.1817 7.4476 44 1 0.8778 0.4525 7.3551 45 1 0.9250 1.7394 6.0742 46 1 1.3687 -1.9706 4.6934 47 1 1.3769 -0.2700 4.1657 48 1 2.7971 -0.8699 2.2301 49 1 1.2918 -1.8195 2.2238 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235514331.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:49 Heat of formation + Delta-G solvation = -19.995440 kcal Electronic energy + Delta-G solvation = -27475.260871 eV Core-core repulsion = 23980.618656 eV Total energy + Delta-G solvation = -3494.642214 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.82131 -40.00689 -38.76650 -36.80427 -35.47591 -33.76891 -31.92508 -31.23330 -30.94302 -27.61612 -26.58824 -26.37794 -25.49064 -24.02426 -23.49219 -22.68196 -21.32006 -20.89606 -20.23247 -18.97054 -18.17570 -17.32446 -17.05243 -16.38547 -16.30137 -15.93758 -15.70803 -15.62979 -15.28228 -15.06033 -14.78285 -14.38854 -14.36779 -13.78674 -13.58866 -13.38274 -13.36186 -13.15421 -12.95933 -12.87914 -12.71163 -12.59724 -12.46988 -12.35128 -12.14593 -12.04329 -11.99859 -11.91023 -11.49290 -11.38905 -11.32296 -11.18088 -11.02256 -10.97311 -10.24734 -9.26389 -9.06318 -8.96458 -8.46124 -6.27813 0.98619 1.16610 1.32782 1.40373 1.47492 2.18754 2.69255 2.84935 3.19262 3.65403 3.67785 3.80093 3.88312 3.89746 3.93465 4.00972 4.16478 4.26186 4.34058 4.44055 4.45444 4.54353 4.60503 4.68227 4.74607 4.75575 4.78306 4.81947 4.82961 4.86941 4.96007 5.00644 5.01594 5.05543 5.06427 5.20008 5.23679 5.26080 5.35349 5.42395 5.43545 5.49027 5.58122 5.81157 6.07865 6.18180 6.23544 6.28525 6.37552 6.44422 6.48853 6.77894 7.03565 7.11537 8.45629 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012275 B = 0.004672 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.421196 B = 5991.761729 C = 7072.727162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.043 3.957 3 Si 0.952 3.048 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.262 1.262 7 C -0.472 4.472 8 H 0.067 0.933 9 C 0.091 3.909 10 C -0.183 4.183 11 C -0.121 4.121 12 C -0.231 4.231 13 C -0.090 4.090 14 C -0.187 4.187 15 C 0.127 3.873 16 N -0.535 5.535 17 C 0.056 3.944 18 C -0.100 4.100 19 C 0.096 3.904 20 O -0.378 6.378 21 C 0.046 3.954 22 C -0.129 4.129 23 C -0.130 4.130 24 C -0.165 4.165 25 C -0.129 4.129 26 C 0.082 3.918 27 H 0.280 0.720 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.023 0.977 33 H 0.079 0.921 34 H 0.027 0.973 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.049 0.951 48 H 0.024 0.976 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.424 2.874 11.794 14.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.170 4.170 3 Si 0.775 3.225 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.186 1.186 7 C -0.503 4.503 8 H 0.085 0.915 9 C 0.089 3.911 10 C -0.202 4.202 11 C -0.140 4.140 12 C -0.250 4.250 13 C -0.109 4.109 14 C -0.189 4.189 15 C 0.000 4.000 16 N -0.260 5.260 17 C -0.072 4.072 18 C -0.138 4.138 19 C 0.038 3.962 20 O -0.297 6.297 21 C -0.012 4.012 22 C -0.166 4.166 23 C -0.167 4.167 24 C -0.203 4.203 25 C -0.167 4.167 26 C -0.046 4.046 27 H 0.090 0.910 28 H 0.125 0.875 29 H 0.122 0.878 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.041 0.959 33 H 0.098 0.902 34 H 0.045 0.955 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.110 0.890 44 H 0.099 0.901 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.068 0.932 48 H 0.042 0.958 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.967 2.564 12.217 14.296 hybrid contribution 0.089 1.597 -1.167 1.980 sum 7.056 4.161 11.050 13.755 Atomic orbital electron populations 1.69830 1.08283 1.29347 1.39140 1.26345 0.95307 1.03070 0.92229 0.85687 0.79138 0.77789 0.79908 1.18664 1.19698 1.18600 1.19392 0.93827 0.90583 1.46509 0.91492 1.17728 0.92314 0.92324 0.88733 1.21563 0.98474 0.96608 1.03588 1.21013 0.98888 0.93994 1.00099 1.20804 0.98169 0.98653 1.07350 1.20725 0.94825 0.96688 0.98616 1.19940 0.99153 0.95292 1.04511 1.20590 0.93648 0.98575 0.87178 1.62111 1.16944 1.28629 1.18330 1.22123 0.90319 1.00988 0.93793 1.21569 1.00280 0.95820 0.96148 1.22204 0.94577 0.97354 0.82052 1.87920 1.91784 1.23352 1.26625 1.24092 0.97184 0.81517 0.98406 1.23176 0.99301 0.98823 0.95339 1.22646 0.96757 0.97371 0.99963 1.23547 0.97090 0.99693 0.99958 1.22068 0.98198 1.00319 0.96111 1.21947 0.98670 0.89778 0.94220 0.90956 0.87491 0.87839 0.86806 0.86734 0.95854 0.90235 0.95508 0.88658 0.89153 0.90979 0.92845 0.89877 0.89841 0.89387 0.89578 0.89016 0.90124 0.92142 0.92189 0.93189 0.95816 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.27 10.60 21.83 0.23 -43.03 16 2 C 0.04 2.10 5.37 85.26 0.46 2.56 16 3 Si 0.95 38.17 29.56 68.60 2.03 40.20 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.47 -23.87 5.18 23.46 0.12 -23.75 16 8 H 0.07 3.35 6.50 -2.91 -0.02 3.33 16 9 C 0.09 4.68 4.24 -21.29 -0.09 4.59 16 10 C -0.18 -9.55 8.67 22.73 0.20 -9.35 16 11 C -0.12 -5.68 10.02 22.22 0.22 -5.46 16 12 C -0.23 -9.99 10.05 22.46 0.23 -9.76 16 13 C -0.09 -3.88 9.66 22.22 0.21 -3.66 16 14 C -0.19 -8.60 4.60 -19.41 -0.09 -8.69 16 15 C 0.13 5.00 5.04 85.56 0.43 5.43 16 16 N -0.54 -20.07 4.75 -900.93 -4.28 -24.35 16 17 C 0.06 1.65 5.46 86.33 0.47 2.12 16 18 C -0.10 -2.75 5.75 30.65 0.18 -2.57 16 19 C 0.10 2.94 2.67 30.68 0.08 3.02 16 20 O -0.38 -11.11 10.01 -148.98 -1.49 -12.61 16 21 C 0.05 1.12 4.28 31.18 0.13 1.26 16 22 C -0.13 -2.41 7.91 31.12 0.25 -2.17 16 23 C -0.13 -2.23 8.08 31.12 0.25 -1.98 16 24 C -0.17 -3.83 7.92 31.18 0.25 -3.58 16 25 C -0.13 -4.74 5.72 30.65 0.18 -4.56 16 26 C 0.08 3.43 3.86 86.33 0.33 3.76 16 27 H 0.28 13.46 8.30 -92.71 -0.77 12.70 16 28 H 0.11 5.94 6.13 -2.91 -0.02 5.92 16 29 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 30 H 0.11 4.23 8.06 -2.92 -0.02 4.21 16 31 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 32 H 0.02 0.97 6.51 -2.39 -0.02 0.95 16 33 H 0.08 2.74 8.06 -2.39 -0.02 2.72 16 34 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.10 2.40 8.12 -2.39 -0.02 2.38 16 36 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.05 1.63 7.42 -2.39 -0.02 1.61 16 39 H 0.08 2.02 7.46 -2.39 -0.02 2.00 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.09 1.67 8.14 -2.38 -0.02 1.66 16 42 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 44 H 0.08 1.98 8.14 -2.38 -0.02 1.97 16 45 H 0.06 1.46 8.14 -2.38 -0.02 1.45 16 46 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.02 1.06 6.84 -2.39 -0.02 1.04 16 49 H 0.06 3.24 5.20 -2.39 -0.01 3.23 16 Total: -1.00 -56.06 374.99 1.21 -54.86 By element: Atomic # 1 Polarization: 36.82 SS G_CDS: 0.91 Total: 37.73 kcal Atomic # 6 Polarization: -56.60 SS G_CDS: 3.81 Total: -52.80 kcal Atomic # 7 Polarization: -63.33 SS G_CDS: -4.05 Total: -67.38 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -1.49 Total: -12.61 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Total: -56.06 1.21 -54.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235514331.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.860 kcal (2) G-P(sol) polarization free energy of solvation -56.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds