Wall clock time and date at job start Tue Mar 31 2020 12:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86806 * 119.99916 * 2 1 4 4 H 1.48502 * 109.46811 * 269.99865 * 3 2 1 5 5 H 1.48503 * 109.46945 * 30.00035 * 3 2 1 6 6 H 1.48500 * 109.47007 * 149.99819 * 3 2 1 7 7 C 1.39946 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99734 * 163.65864 * 7 2 1 9 9 C 1.41395 * 119.99922 * 343.66868 * 7 2 1 10 10 C 1.40732 * 120.24502 * 334.25100 * 9 7 2 11 11 C 1.37600 * 119.74535 * 180.32096 * 10 9 7 12 12 C 1.38655 * 120.24687 * 359.66588 * 11 10 9 13 13 C 1.38613 * 120.50170 * 0.02562 * 12 11 10 14 14 C 1.37638 * 120.24885 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.12710 * 179.97438 * 14 13 12 16 16 N 1.46900 * 109.47034 * 259.99727 * 15 14 13 17 17 C 1.46845 * 111.00534 * 169.99804 * 16 15 14 18 18 C 1.53055 * 109.52907 * 174.11283 * 17 16 15 19 19 C 1.53002 * 109.27232 * 59.04297 * 18 17 16 20 20 C 1.53077 * 109.55659 * 62.58107 * 19 18 17 21 21 C 1.53116 * 109.15128 * 176.86358 * 20 19 18 22 22 O 1.42904 * 109.40286 * 302.50561 * 21 20 19 23 23 C 1.42895 * 114.11857 * 61.21117 * 22 21 20 24 24 C 1.53064 * 109.57757 * 182.40813 * 19 18 17 25 25 C 1.53023 * 109.35714 * 302.50713 * 19 18 17 26 26 C 1.46859 * 110.99962 * 45.77085 * 16 15 14 27 27 H 0.96999 * 120.00624 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.12650 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.87860 * 179.68929 * 11 10 9 30 30 H 1.08004 * 119.75248 * 180.02562 * 12 11 10 31 31 H 1.08004 * 119.87641 * 180.02562 * 13 12 11 32 32 H 1.09002 * 109.47458 * 139.99595 * 15 14 13 33 33 H 1.09000 * 109.47025 * 19.99464 * 15 14 13 34 34 H 1.09002 * 109.45696 * 54.10150 * 17 16 15 35 35 H 1.08992 * 109.45511 * 294.13202 * 17 16 15 36 36 H 1.09001 * 109.50233 * 299.10863 * 18 17 16 37 37 H 1.08995 * 109.53687 * 179.00418 * 18 17 16 38 38 H 1.08993 * 109.52863 * 296.76967 * 20 19 18 39 39 H 1.09003 * 109.51871 * 56.96488 * 20 19 18 40 40 H 1.09004 * 109.48389 * 62.48495 * 21 20 19 41 41 H 1.08999 * 109.48012 * 182.52294 * 21 20 19 42 42 H 1.08996 * 109.48443 * 178.82590 * 23 22 21 43 43 H 1.08998 * 109.48871 * 58.78934 * 23 22 21 44 44 H 1.08998 * 109.52021 * 303.07189 * 24 19 18 45 45 H 1.09002 * 109.52308 * 63.26399 * 24 19 18 46 46 H 1.08996 * 109.50530 * 177.44333 * 25 19 18 47 47 H 1.08993 * 109.50188 * 297.57678 * 25 19 18 48 48 H 1.08996 * 109.46413 * 305.91408 * 26 16 15 49 49 H 1.09001 * 109.46421 * 65.89461 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4396 2.6527 0.7001 6 1 3.5397 1.4402 0.7001 7 6 2.0080 -1.2119 0.0005 8 1 3.0552 -1.2308 -0.2626 9 6 1.3438 -2.4116 0.3454 10 6 0.2103 -2.3800 1.1788 11 6 -0.4242 -3.5543 1.5133 12 6 0.0453 -4.7649 1.0268 13 6 1.1570 -4.8073 0.2001 14 6 1.8080 -3.6453 -0.1467 15 6 3.0168 -3.6947 -1.0453 16 7 4.2361 -3.5974 -0.2317 17 6 5.4308 -3.8783 -1.0380 18 6 6.6855 -3.6253 -0.1988 19 6 6.6556 -4.5253 1.0382 20 6 6.6830 -5.9931 0.6047 21 6 6.7319 -6.8836 1.8493 22 8 7.8776 -6.5424 2.6324 23 6 7.8804 -5.1944 3.1066 24 6 7.8775 -4.2351 1.9132 25 6 5.3783 -4.2504 1.8347 26 6 4.1621 -4.4855 0.9356 27 1 -0.4851 0.8400 -0.0004 28 1 -0.1574 -1.4380 1.5583 29 1 -1.2913 -3.5330 2.1568 30 1 -0.4591 -5.6817 1.2941 31 1 1.5138 -5.7559 -0.1734 32 1 2.9816 -2.8622 -1.7480 33 1 3.0218 -4.6352 -1.5962 34 1 5.4407 -3.2264 -1.9116 35 1 5.4139 -4.9189 -1.3615 36 1 6.7111 -2.5808 0.1117 37 1 7.5720 -3.8507 -0.7915 38 1 5.7853 -6.2199 0.0296 39 1 7.5655 -6.1754 -0.0086 40 1 5.8290 -6.7318 2.4408 41 1 6.7968 -7.9286 1.5463 42 1 8.7725 -5.0227 3.7088 43 1 6.9924 -5.0210 3.7144 44 1 8.7863 -4.3782 1.3287 45 1 7.8324 -3.2070 2.2725 46 1 5.3323 -4.9220 2.6920 47 1 5.3807 -3.2169 2.1808 48 1 3.2507 -4.2748 1.4951 49 1 4.1520 -5.5233 0.6024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235527815.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:32 Heat of formation + Delta-G solvation = -35.865765 kcal Electronic energy + Delta-G solvation = -27833.598544 eV Core-core repulsion = 24338.268141 eV Total energy + Delta-G solvation = -3495.330403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.54391 -38.27270 -37.04895 -34.39919 -33.58594 -31.27966 -30.92040 -30.30276 -29.41191 -28.29756 -25.56017 -24.68182 -23.65257 -23.46393 -22.35949 -20.94419 -20.57146 -19.35071 -17.99215 -17.09575 -16.44041 -16.05006 -15.47649 -15.22764 -14.75408 -14.65507 -14.36016 -14.34923 -14.20318 -14.05140 -13.47415 -13.11779 -12.82071 -12.56665 -12.42709 -12.02641 -12.00437 -11.79168 -11.59110 -11.40669 -11.31261 -11.20530 -11.01447 -10.91947 -10.85669 -10.55038 -10.50102 -10.40181 -10.30704 -10.11128 -9.83763 -9.47801 -9.29967 -9.23869 -9.10354 -7.61388 -7.32558 -7.26184 -6.70490 -4.28105 2.80231 2.96868 3.10420 3.15762 3.27740 3.84137 3.98256 4.49503 4.66487 4.69020 4.74410 4.81251 4.99216 5.18038 5.26028 5.31423 5.47237 5.52917 5.54600 5.59561 5.70479 5.73475 5.76393 5.83564 5.88937 5.92258 5.96709 6.02591 6.08550 6.14388 6.21359 6.26908 6.31487 6.33797 6.43303 6.49807 6.53709 6.64513 6.73921 6.89363 7.15347 7.15826 7.29597 7.41615 7.65154 7.72323 7.81455 7.98057 8.11028 8.18082 8.35187 8.72192 8.97840 9.04274 10.23836 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014296 B = 0.004433 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.130188 B = 6315.275719 C = 7329.228591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.074 3.926 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.260 1.260 7 C -0.445 4.445 8 H 0.092 0.908 9 C 0.130 3.870 10 C -0.164 4.164 11 C -0.106 4.106 12 C -0.246 4.246 13 C -0.086 4.086 14 C -0.200 4.200 15 C 0.126 3.874 16 N -0.522 5.522 17 C 0.055 3.945 18 C -0.101 4.101 19 C -0.058 4.058 20 C -0.146 4.146 21 C 0.059 3.941 22 O -0.387 6.387 23 C 0.059 3.941 24 C -0.143 4.143 25 C -0.109 4.109 26 C 0.061 3.939 27 H 0.278 0.722 28 H 0.116 0.884 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.012 0.988 34 H 0.069 0.931 35 H 0.025 0.975 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.053 0.947 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.072 0.928 48 H 0.089 0.911 49 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.136 -6.664 1.871 13.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.184 1.184 7 C -0.474 4.474 8 H 0.110 0.890 9 C 0.127 3.873 10 C -0.183 4.183 11 C -0.125 4.125 12 C -0.266 4.266 13 C -0.105 4.105 14 C -0.202 4.202 15 C 0.000 4.000 16 N -0.246 5.246 17 C -0.074 4.074 18 C -0.139 4.139 19 C -0.058 4.058 20 C -0.184 4.184 21 C -0.017 4.017 22 O -0.306 6.306 23 C -0.018 4.018 24 C -0.181 4.181 25 C -0.147 4.147 26 C -0.066 4.066 27 H 0.089 0.911 28 H 0.134 0.866 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.030 0.970 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.078 0.922 47 H 0.091 0.909 48 H 0.107 0.893 49 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 12.128 -6.138 2.052 13.746 hybrid contribution -0.142 0.162 -0.457 0.505 sum 11.986 -5.976 1.594 13.488 Atomic orbital electron populations 1.69834 1.07614 1.29011 1.35809 1.25968 0.94623 1.01339 0.92430 0.86386 0.80791 0.80873 0.79106 1.19684 1.20412 1.18374 1.19764 0.98228 0.90357 1.39054 0.88956 1.17369 0.90388 0.91525 0.88051 1.21359 0.99239 0.96574 1.01149 1.20672 0.98561 0.93480 0.99788 1.20276 1.01761 0.96088 1.08473 1.20359 0.96197 0.95594 0.98333 1.19439 1.00559 0.93677 1.06520 1.20635 0.86974 0.98308 0.94038 1.61983 1.01595 1.52873 1.08153 1.22058 0.90858 0.98375 0.96073 1.21577 0.96789 1.00099 0.95428 1.20536 0.94998 0.94487 0.95778 1.22294 1.02675 0.95150 0.98252 1.22610 0.88688 0.98697 0.91727 1.87880 1.43873 1.28742 1.70062 1.22600 1.01856 0.81934 0.95369 1.22213 0.98373 0.99999 0.97485 1.21746 0.93357 1.02201 0.97367 1.22057 0.98724 0.93184 0.92666 0.91100 0.86599 0.89778 0.89913 0.90148 0.90574 0.96999 0.91277 0.95732 0.90960 0.92280 0.90567 0.91543 0.92785 0.89388 0.89348 0.92859 0.91437 0.90773 0.92219 0.90888 0.89251 0.96145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.35 10.95 55.55 0.61 -19.75 16 2 C 0.07 1.81 5.16 -17.34 -0.09 1.72 16 3 Si 0.90 18.66 29.59 -169.99 -5.03 13.63 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.44 -11.29 8.18 -37.74 -0.31 -11.60 16 8 H 0.09 2.31 6.84 -52.49 -0.36 1.95 16 9 C 0.13 3.30 5.56 -106.83 -0.59 2.70 16 10 C -0.16 -4.19 8.69 -38.87 -0.34 -4.53 16 11 C -0.11 -2.49 10.02 -39.66 -0.40 -2.89 16 12 C -0.25 -5.48 10.05 -39.29 -0.39 -5.87 16 13 C -0.09 -1.88 8.62 -39.66 -0.34 -2.22 16 14 C -0.20 -4.56 3.74 -103.91 -0.39 -4.95 16 15 C 0.13 2.52 4.60 -4.98 -0.02 2.50 16 16 N -0.52 -9.28 4.51 -236.08 -1.07 -10.35 16 17 C 0.05 0.80 5.18 -3.83 -0.02 0.78 16 18 C -0.10 -1.30 4.89 -26.70 -0.13 -1.43 16 19 C -0.06 -0.71 0.51 -154.42 -0.08 -0.79 16 20 C -0.15 -1.71 4.33 -26.63 -0.12 -1.82 16 21 C 0.06 0.68 6.57 37.22 0.24 0.92 16 22 O -0.39 -4.83 10.76 -35.23 -0.38 -5.21 16 23 C 0.06 0.64 6.57 37.22 0.24 0.88 16 24 C -0.14 -1.55 4.92 -26.64 -0.13 -1.69 16 25 C -0.11 -1.55 4.33 -26.69 -0.12 -1.67 16 26 C 0.06 1.04 4.56 -3.81 -0.02 1.02 16 27 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 28 H 0.12 3.09 6.20 -52.49 -0.33 2.76 16 29 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.08 1.65 8.06 -52.48 -0.42 1.23 16 31 H 0.08 1.59 8.03 -52.48 -0.42 1.17 16 32 H 0.08 1.61 7.36 -51.93 -0.38 1.23 16 33 H 0.01 0.22 7.94 -51.93 -0.41 -0.19 16 34 H 0.07 1.01 8.12 -51.93 -0.42 0.58 16 35 H 0.02 0.35 6.60 -51.93 -0.34 0.01 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.95 4.97 -51.93 -0.26 0.69 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.63 6.56 -51.93 -0.34 0.29 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.57 6.68 -51.93 -0.35 0.23 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.06 0.79 5.04 -51.93 -0.26 0.53 16 47 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.09 1.79 6.02 -51.93 -0.31 1.48 16 49 H 0.02 0.33 6.46 -51.93 -0.34 0.00 16 LS Contribution 360.00 15.07 5.43 5.43 Total: -1.00 -26.38 360.00 -11.32 -37.70 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -7.88 Total: 7.47 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: -3.00 Total: -28.93 kcal Atomic # 7 Polarization: -29.64 SS G_CDS: -0.46 Total: -30.10 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.38 Total: -5.21 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -26.38 -11.32 -37.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235527815.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.833 kcal (2) G-P(sol) polarization free energy of solvation -26.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds