Wall clock time and date at job start Tue Mar 31 2020 12:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86806 * 119.99916 * 2 1 4 4 H 1.48502 * 109.46811 * 269.99865 * 3 2 1 5 5 H 1.48503 * 109.46945 * 30.00035 * 3 2 1 6 6 H 1.48500 * 109.47007 * 149.99819 * 3 2 1 7 7 C 1.39946 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99734 * 163.65864 * 7 2 1 9 9 C 1.41395 * 119.99922 * 343.66868 * 7 2 1 10 10 C 1.40732 * 120.24502 * 334.25100 * 9 7 2 11 11 C 1.37600 * 119.74535 * 180.32096 * 10 9 7 12 12 C 1.38655 * 120.24687 * 359.66588 * 11 10 9 13 13 C 1.38613 * 120.50170 * 0.02562 * 12 11 10 14 14 C 1.37638 * 120.24885 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.12710 * 179.97438 * 14 13 12 16 16 N 1.46900 * 109.47034 * 259.99727 * 15 14 13 17 17 C 1.46845 * 111.00534 * 169.99804 * 16 15 14 18 18 C 1.53055 * 109.52907 * 174.11283 * 17 16 15 19 19 C 1.53002 * 109.27232 * 59.04297 * 18 17 16 20 20 C 1.53077 * 109.55659 * 62.58107 * 19 18 17 21 21 C 1.53116 * 109.15128 * 176.86358 * 20 19 18 22 22 O 1.42904 * 109.40286 * 302.50561 * 21 20 19 23 23 C 1.42895 * 114.11857 * 61.21117 * 22 21 20 24 24 C 1.53064 * 109.57757 * 182.40813 * 19 18 17 25 25 C 1.53023 * 109.35714 * 302.50713 * 19 18 17 26 26 C 1.46859 * 110.99962 * 45.77085 * 16 15 14 27 27 H 0.96999 * 120.00624 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.12650 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.87860 * 179.68929 * 11 10 9 30 30 H 1.08004 * 119.75248 * 180.02562 * 12 11 10 31 31 H 1.08004 * 119.87641 * 180.02562 * 13 12 11 32 32 H 1.09002 * 109.47458 * 139.99595 * 15 14 13 33 33 H 1.09000 * 109.47025 * 19.99464 * 15 14 13 34 34 H 1.09002 * 109.45696 * 54.10150 * 17 16 15 35 35 H 1.08992 * 109.45511 * 294.13202 * 17 16 15 36 36 H 1.09001 * 109.50233 * 299.10863 * 18 17 16 37 37 H 1.08995 * 109.53687 * 179.00418 * 18 17 16 38 38 H 1.08993 * 109.52863 * 296.76967 * 20 19 18 39 39 H 1.09003 * 109.51871 * 56.96488 * 20 19 18 40 40 H 1.09004 * 109.48389 * 62.48495 * 21 20 19 41 41 H 1.08999 * 109.48012 * 182.52294 * 21 20 19 42 42 H 1.08996 * 109.48443 * 178.82590 * 23 22 21 43 43 H 1.08998 * 109.48871 * 58.78934 * 23 22 21 44 44 H 1.08998 * 109.52021 * 303.07189 * 24 19 18 45 45 H 1.09002 * 109.52308 * 63.26399 * 24 19 18 46 46 H 1.08996 * 109.50530 * 177.44333 * 25 19 18 47 47 H 1.08993 * 109.50188 * 297.57678 * 25 19 18 48 48 H 1.08996 * 109.46413 * 305.91408 * 26 16 15 49 49 H 1.09001 * 109.46421 * 65.89461 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4396 2.6527 0.7001 6 1 3.5397 1.4402 0.7001 7 6 2.0080 -1.2119 0.0005 8 1 3.0552 -1.2308 -0.2626 9 6 1.3438 -2.4116 0.3454 10 6 0.2103 -2.3800 1.1788 11 6 -0.4242 -3.5543 1.5133 12 6 0.0453 -4.7649 1.0268 13 6 1.1570 -4.8073 0.2001 14 6 1.8080 -3.6453 -0.1467 15 6 3.0168 -3.6947 -1.0453 16 7 4.2361 -3.5974 -0.2317 17 6 5.4308 -3.8783 -1.0380 18 6 6.6855 -3.6253 -0.1988 19 6 6.6556 -4.5253 1.0382 20 6 6.6830 -5.9931 0.6047 21 6 6.7319 -6.8836 1.8493 22 8 7.8776 -6.5424 2.6324 23 6 7.8804 -5.1944 3.1066 24 6 7.8775 -4.2351 1.9132 25 6 5.3783 -4.2504 1.8347 26 6 4.1621 -4.4855 0.9356 27 1 -0.4851 0.8400 -0.0004 28 1 -0.1574 -1.4380 1.5583 29 1 -1.2913 -3.5330 2.1568 30 1 -0.4591 -5.6817 1.2941 31 1 1.5138 -5.7559 -0.1734 32 1 2.9816 -2.8622 -1.7480 33 1 3.0218 -4.6352 -1.5962 34 1 5.4407 -3.2264 -1.9116 35 1 5.4139 -4.9189 -1.3615 36 1 6.7111 -2.5808 0.1117 37 1 7.5720 -3.8507 -0.7915 38 1 5.7853 -6.2199 0.0296 39 1 7.5655 -6.1754 -0.0086 40 1 5.8290 -6.7318 2.4408 41 1 6.7968 -7.9286 1.5463 42 1 8.7725 -5.0227 3.7088 43 1 6.9924 -5.0210 3.7144 44 1 8.7863 -4.3782 1.3287 45 1 7.8324 -3.2070 2.2725 46 1 5.3323 -4.9220 2.6920 47 1 5.3807 -3.2169 2.1808 48 1 3.2507 -4.2748 1.4951 49 1 4.1520 -5.5233 0.6024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235527815.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:31 Heat of formation + Delta-G solvation = -48.750040 kcal Electronic energy + Delta-G solvation = -27834.157248 eV Core-core repulsion = 24338.268141 eV Total energy + Delta-G solvation = -3495.889107 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.60152 -39.81013 -38.39715 -35.66883 -35.41821 -32.46339 -32.05380 -31.67420 -31.20581 -29.59005 -27.27346 -26.14573 -24.66842 -24.58758 -23.61607 -22.77668 -21.74462 -21.05312 -19.07021 -18.95089 -17.48520 -17.14191 -16.93945 -16.51674 -16.30938 -15.86046 -15.78502 -15.60066 -15.35987 -15.26430 -15.06176 -14.57104 -14.32038 -14.01225 -13.47916 -13.43716 -13.34530 -13.12311 -12.99566 -12.82120 -12.72416 -12.67341 -12.46120 -12.32257 -12.19238 -12.07701 -12.00813 -11.62339 -11.41386 -11.32569 -11.11967 -11.08314 -10.98104 -10.81777 -10.24638 -9.21600 -9.18785 -8.88217 -8.54566 -6.20434 1.01908 1.14192 1.40047 1.50702 1.57457 2.24913 2.81457 2.99876 3.20308 3.68425 3.69886 3.80322 3.90404 4.11213 4.22863 4.27735 4.30090 4.35095 4.37790 4.39807 4.52143 4.53783 4.57599 4.64553 4.68141 4.73355 4.81141 4.82899 4.87120 4.87991 4.96120 5.02905 5.06757 5.13894 5.14514 5.19196 5.27098 5.29017 5.38936 5.41444 5.42787 5.51498 5.57969 5.81639 6.05318 6.22554 6.26677 6.29133 6.37999 6.49654 6.50320 6.82469 7.08869 7.16176 8.41485 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014296 B = 0.004433 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.130188 B = 6315.275719 C = 7329.228591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.034 3.966 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.468 4.468 8 H 0.088 0.912 9 C 0.102 3.898 10 C -0.193 4.193 11 C -0.114 4.114 12 C -0.244 4.244 13 C -0.090 4.090 14 C -0.198 4.198 15 C 0.134 3.866 16 N -0.535 5.535 17 C 0.054 3.946 18 C -0.096 4.096 19 C -0.054 4.054 20 C -0.140 4.140 21 C 0.058 3.942 22 O -0.399 6.399 23 C 0.056 3.944 24 C -0.138 4.138 25 C -0.101 4.101 26 C 0.070 3.930 27 H 0.283 0.717 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.058 0.942 33 H 0.026 0.974 34 H 0.068 0.932 35 H 0.036 0.964 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.049 0.951 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.055 0.945 48 H 0.052 0.948 49 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.139 -7.866 1.671 16.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.180 4.180 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.498 4.498 8 H 0.106 0.894 9 C 0.099 3.901 10 C -0.213 4.213 11 C -0.133 4.133 12 C -0.263 4.263 13 C -0.108 4.108 14 C -0.200 4.200 15 C 0.008 3.992 16 N -0.260 5.260 17 C -0.073 4.073 18 C -0.134 4.134 19 C -0.054 4.054 20 C -0.178 4.178 21 C -0.018 4.018 22 O -0.318 6.318 23 C -0.020 4.020 24 C -0.175 4.175 25 C -0.139 4.139 26 C -0.058 4.058 27 H 0.093 0.907 28 H 0.113 0.887 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.066 0.934 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.068 0.932 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 14.134 -7.353 1.853 16.039 hybrid contribution -0.798 0.402 -0.383 0.972 sum 13.336 -6.951 1.470 15.110 Atomic orbital electron populations 1.69899 1.08923 1.30005 1.36949 1.26706 0.95284 1.04289 0.91732 0.85370 0.79249 0.76827 0.79268 1.18942 1.19730 1.18464 1.19869 0.98110 0.91315 1.40501 0.89436 1.17684 0.90908 0.92788 0.88693 1.21327 1.00584 0.96650 1.02742 1.20915 0.99017 0.93362 1.00000 1.20638 1.01599 0.96607 1.07503 1.20657 0.95888 0.96330 0.97950 1.19774 1.01145 0.93210 1.05833 1.20470 0.87132 0.98168 0.93468 1.61896 1.01735 1.53794 1.08608 1.22140 0.90186 0.98988 0.96034 1.21554 0.96591 0.99574 0.95657 1.20497 0.94452 0.95015 0.95468 1.22231 1.02711 0.94416 0.98395 1.22669 0.88273 0.99504 0.91388 1.87872 1.44180 1.29514 1.70217 1.22715 1.02634 0.81279 0.95402 1.22168 0.97793 1.00219 0.97359 1.21661 0.93482 1.01327 0.97446 1.21918 0.98305 0.93310 0.92296 0.90653 0.88665 0.88016 0.87107 0.87550 0.92394 0.95626 0.91335 0.94622 0.92122 0.89943 0.91295 0.90581 0.93384 0.87948 0.87559 0.93241 0.90483 0.90507 0.91323 0.92655 0.92917 0.95293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.98 10.95 21.83 0.24 -43.74 16 2 C 0.03 1.70 5.16 85.26 0.44 2.14 16 3 Si 0.97 39.10 29.59 68.60 2.03 41.13 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 7 C -0.47 -24.66 8.18 23.46 0.19 -24.47 16 8 H 0.09 4.54 6.84 -2.91 -0.02 4.52 16 9 C 0.10 5.36 5.56 -21.29 -0.12 5.24 16 10 C -0.19 -10.28 8.69 22.73 0.20 -10.08 16 11 C -0.11 -5.40 10.02 22.22 0.22 -5.18 16 12 C -0.24 -10.58 10.05 22.46 0.23 -10.35 16 13 C -0.09 -3.83 8.62 22.22 0.19 -3.63 16 14 C -0.20 -9.12 3.74 -19.40 -0.07 -9.19 16 15 C 0.13 5.36 4.60 85.56 0.39 5.75 16 16 N -0.54 -18.91 4.51 -900.82 -4.06 -22.97 16 17 C 0.05 1.51 5.18 86.33 0.45 1.96 16 18 C -0.10 -2.27 4.89 30.61 0.15 -2.12 16 19 C -0.05 -1.21 0.51 -52.13 -0.03 -1.24 16 20 C -0.14 -2.89 4.33 30.66 0.13 -2.76 16 21 C 0.06 1.18 6.57 72.02 0.47 1.66 16 22 O -0.40 -8.94 10.76 -148.98 -1.60 -10.54 16 23 C 0.06 1.07 6.57 72.02 0.47 1.55 16 24 C -0.14 -2.65 4.92 30.65 0.15 -2.50 16 25 C -0.10 -2.81 4.33 30.62 0.13 -2.68 16 26 C 0.07 2.32 4.56 86.33 0.39 2.71 16 27 H 0.28 13.71 8.30 -92.71 -0.77 12.94 16 28 H 0.10 5.36 6.20 -2.91 -0.02 5.34 16 29 H 0.10 4.31 8.06 -2.91 -0.02 4.28 16 30 H 0.11 4.14 8.06 -2.91 -0.02 4.12 16 31 H 0.11 3.96 8.03 -2.91 -0.02 3.93 16 32 H 0.06 2.51 7.36 -2.39 -0.02 2.49 16 33 H 0.03 0.94 7.94 -2.39 -0.02 0.92 16 34 H 0.07 1.91 8.12 -2.39 -0.02 1.89 16 35 H 0.04 0.93 6.60 -2.39 -0.02 0.91 16 36 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 38 H 0.07 1.54 4.97 -2.39 -0.01 1.52 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.05 1.03 6.56 -2.39 -0.02 1.01 16 41 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.05 0.98 6.68 -2.39 -0.02 0.97 16 44 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.07 1.77 5.04 -2.39 -0.01 1.75 16 47 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.05 2.14 6.02 -2.39 -0.01 2.13 16 49 H 0.03 0.91 6.46 -2.39 -0.02 0.89 16 Total: -1.00 -57.89 360.00 1.53 -56.36 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: 0.93 Total: 32.94 kcal Atomic # 6 Polarization: -57.18 SS G_CDS: 4.00 Total: -53.18 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: -3.83 Total: -66.71 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -1.60 Total: -10.54 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -57.89 1.53 -56.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235527815.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.611 kcal (2) G-P(sol) polarization free energy of solvation -57.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds