Wall clock time and date at job start Tue Mar 31 2020 12:10:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30828 * 1
3 3 Si 1.86803 * 119.99893 * 2 1
4 4 H 1.48502 * 109.46931 * 264.17238 * 3 2 1
5 5 H 1.48505 * 109.46910 * 24.16728 * 3 2 1
6 6 H 1.48491 * 109.47165 * 144.16962 * 3 2 1
7 7 C 1.39943 * 120.00227 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99651 * 17.08609 * 7 2 1
9 9 C 1.41391 * 119.99982 * 197.08501 * 7 2 1
10 10 C 1.40732 * 120.24400 * 235.01547 * 9 7 2
11 11 C 1.37602 * 119.74141 * 180.27728 * 10 9 7
12 12 C 1.38650 * 120.25319 * 359.51793 * 11 10 9
13 13 C 1.38621 * 120.49749 * 0.46423 * 12 11 10
14 14 C 1.37631 * 120.24974 * 359.79346 * 13 12 11
15 15 C 1.50702 * 120.13015 * 179.97438 * 14 13 12
16 16 N 1.46897 * 109.46710 * 266.39282 * 15 14 13
17 17 C 1.47008 * 111.00534 * 65.88064 * 16 15 14
18 18 C 1.53093 * 109.30082 * 177.63467 * 17 16 15
19 19 O 1.43026 * 109.24652 * 56.83320 * 18 17 16
20 20 C 1.42982 * 113.70653 * 301.35840 * 19 18 17
21 21 C 1.52982 * 109.45771 * 298.79049 * 20 19 18
22 22 C 1.53005 * 109.44993 * 299.94977 * 21 20 19
23 23 C 1.52993 * 109.46132 * 300.02497 * 22 21 20
24 24 C 1.53007 * 109.49785 * 59.99969 * 23 22 21
25 25 C 1.52949 * 109.49564 * 178.71245 * 20 19 18
26 26 C 1.47040 * 110.99974 * 302.25181 * 16 15 14
27 27 H 0.96993 * 119.99896 * 359.97438 * 1 2 3
28 28 H 1.07995 * 120.12735 * 0.02562 * 10 9 7
29 29 H 1.08009 * 119.87022 * 179.75274 * 11 10 9
30 30 H 1.07996 * 119.75495 * 180.23658 * 12 11 10
31 31 H 1.08002 * 119.87222 * 179.77125 * 13 12 11
32 32 H 1.08995 * 109.47088 * 26.38921 * 15 14 13
33 33 H 1.09001 * 109.47364 * 146.39567 * 15 14 13
34 34 H 1.09002 * 109.50173 * 297.58666 * 17 16 15
35 35 H 1.09000 * 109.49953 * 57.68610 * 17 16 15
36 36 H 1.09002 * 109.50868 * 176.76744 * 18 17 16
37 37 H 1.09001 * 109.50672 * 296.89890 * 18 17 16
38 38 H 1.08996 * 109.47506 * 59.94483 * 21 20 19
39 39 H 1.09009 * 109.46904 * 179.97438 * 21 20 19
40 40 H 1.09000 * 109.46903 * 180.02562 * 22 21 20
41 41 H 1.08992 * 109.47506 * 60.02733 * 22 21 20
42 42 H 1.09006 * 109.46763 * 299.99478 * 23 22 21
43 43 H 1.08999 * 109.46605 * 180.02562 * 23 22 21
44 44 H 1.09003 * 109.47173 * 180.02562 * 24 23 22
45 45 H 1.08998 * 109.46820 * 60.01736 * 24 23 22
46 46 H 1.08994 * 109.47651 * 180.02562 * 25 20 19
47 47 H 1.09004 * 109.47261 * 300.04757 * 25 20 19
48 48 H 1.08997 * 109.51040 * 302.27272 * 26 16 15
49 49 H 1.08997 * 109.50895 * 62.42798 * 26 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2423 1.6178 0.0000
4 1 2.6128 1.9753 -1.3929
5 1 1.3834 2.6851 0.5732
6 1 3.4727 1.4789 0.8195
7 6 2.0080 -1.2119 -0.0005
8 1 1.5038 -2.1265 -0.2758
9 6 3.3752 -1.2390 0.3592
10 6 4.3273 -1.7952 -0.5152
11 6 5.6543 -1.8214 -0.1522
12 6 6.0560 -1.2936 1.0653
13 6 5.1269 -0.7429 1.9343
14 6 3.7936 -0.7107 1.5943
15 6 2.7857 -0.1119 2.5413
16 7 2.2142 -1.1720 3.3824
17 6 3.2346 -1.7477 4.2704
18 6 2.5859 -2.8043 5.1685
19 8 1.9574 -3.7959 4.3515
20 6 0.9577 -3.2695 3.4752
21 6 -0.1555 -2.6232 4.3020
22 6 -0.7843 -3.6738 5.2194
23 6 -1.3686 -4.8061 4.3724
24 6 -0.2551 -5.4521 3.5455
25 6 0.3741 -4.4014 2.6282
26 6 1.5896 -2.2183 2.5595
27 1 -0.4849 0.8400 0.0004
28 1 4.0171 -2.2035 -1.4657
29 1 6.3863 -2.2514 -0.8200
30 1 7.1001 -1.3149 1.3405
31 1 5.4505 -0.3379 2.8817
32 1 3.2761 0.6286 3.1731
33 1 1.9905 0.3672 1.9702
34 1 4.0187 -2.2108 3.6715
35 1 3.6655 -0.9599 4.8883
36 1 3.3497 -3.2739 5.7882
37 1 1.8391 -2.3312 5.8061
38 1 0.2614 -1.8167 4.9052
39 1 -0.9176 -2.2214 3.6340
40 1 -1.5778 -3.2138 5.8083
41 1 -0.0225 -4.0756 5.8874
42 1 -2.1305 -4.4041 3.7045
43 1 -1.8170 -5.5544 5.0259
44 1 -0.6719 -6.2584 2.9419
45 1 0.5066 -5.8545 4.2133
46 1 -0.3876 -3.9998 1.9600
47 1 1.1680 -4.8614 2.0397
48 1 0.8192 -1.7742 1.9292
49 1 2.3470 -2.6893 1.9331
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001235530121.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:10:46
Heat of formation + Delta-G solvation = -24.677896 kcal
Electronic energy + Delta-G solvation = -29034.162977 eV
Core-core repulsion = 25539.317717 eV
Total energy + Delta-G solvation = -3494.845261 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 1.17 seconds
Orbital eigenvalues (eV)
-40.15920 -38.41328 -36.28106 -34.82134 -33.44711 -31.26619 -30.68238 -30.40054
-30.10641 -27.91596 -26.05824 -24.77151 -23.58165 -22.55247 -21.85095 -20.76505
-20.29502 -19.37927 -18.73325 -17.49373 -16.08451 -15.53586 -15.48154 -14.99393
-14.68405 -14.47915 -14.16736 -13.99485 -13.82915 -13.68376 -13.45512 -13.00339
-12.92122 -12.69974 -12.17000 -12.09983 -11.82622 -11.78366 -11.63729 -11.41246
-11.32259 -11.08553 -10.83815 -10.72316 -10.67267 -10.54626 -10.28717 -10.20935
-10.08999 -10.05470 -9.90376 -9.58959 -9.37962 -9.06687 -8.72475 -7.78231
-7.51395 -7.34393 -6.71804 -4.41575 2.45979 2.52918 3.11372 3.20240
3.29877 4.04820 4.23928 4.52901 4.67843 5.09144 5.11636 5.16104
5.21019 5.47733 5.53637 5.57508 5.64193 5.73978 5.76992 5.83332
5.88930 5.91482 5.92882 5.97525 6.02205 6.07417 6.09150 6.13172
6.32622 6.36045 6.37305 6.40298 6.49554 6.55214 6.56834 6.62064
6.72409 6.77324 6.78846 6.84412 6.88408 7.15157 7.22391 7.35914
7.47293 7.57703 7.73657 7.77923 7.86151 7.94550 8.04464 8.44068
8.65917 8.91771 10.31005
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.014399 B = 0.006025 C = 0.005283
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1944.157398 B = 4645.815512 C = 5299.228237
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.827 5.827
2 C 0.097 3.903
3 Si 0.863 3.137
4 H -0.276 1.276
5 H -0.280 1.280
6 H -0.234 1.234
7 C -0.491 4.491
8 H 0.091 0.909
9 C 0.101 3.899
10 C -0.184 4.184
11 C -0.105 4.105
12 C -0.208 4.208
13 C -0.094 4.094
14 C -0.181 4.181
15 C 0.107 3.893
16 N -0.520 5.520
17 C 0.011 3.989
18 C 0.066 3.934
19 O -0.378 6.378
20 C 0.121 3.879
21 C -0.133 4.133
22 C -0.115 4.115
23 C -0.117 4.117
24 C -0.113 4.113
25 C -0.101 4.101
26 C 0.040 3.960
27 H 0.279 0.721
28 H 0.104 0.896
29 H 0.095 0.905
30 H 0.094 0.906
31 H 0.093 0.907
32 H 0.056 0.944
33 H 0.087 0.913
34 H 0.047 0.953
35 H 0.069 0.931
36 H 0.084 0.916
37 H 0.053 0.947
38 H 0.074 0.926
39 H 0.070 0.930
40 H 0.052 0.948
41 H 0.061 0.939
42 H 0.059 0.941
43 H 0.053 0.947
44 H 0.055 0.945
45 H 0.065 0.935
46 H 0.078 0.922
47 H 0.065 0.935
48 H 0.115 0.885
49 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.542 -4.171 8.292 9.298
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.455 5.455
2 C -0.117 4.117
3 Si 0.688 3.312
4 H -0.202 1.202
5 H -0.206 1.206
6 H -0.157 1.157
7 C -0.523 4.523
8 H 0.109 0.891
9 C 0.098 3.902
10 C -0.203 4.203
11 C -0.124 4.124
12 C -0.227 4.227
13 C -0.113 4.113
14 C -0.183 4.183
15 C -0.020 4.020
16 N -0.243 5.243
17 C -0.117 4.117
18 C -0.011 4.011
19 O -0.297 6.297
20 C 0.082 3.918
21 C -0.171 4.171
22 C -0.152 4.152
23 C -0.155 4.155
24 C -0.150 4.150
25 C -0.139 4.139
26 C -0.088 4.088
27 H 0.089 0.911
28 H 0.122 0.878
29 H 0.113 0.887
30 H 0.112 0.888
31 H 0.111 0.889
32 H 0.074 0.926
33 H 0.105 0.895
34 H 0.065 0.935
35 H 0.087 0.913
36 H 0.102 0.898
37 H 0.071 0.929
38 H 0.092 0.908
39 H 0.088 0.912
40 H 0.071 0.929
41 H 0.080 0.920
42 H 0.077 0.923
43 H 0.072 0.928
44 H 0.073 0.927
45 H 0.084 0.916
46 H 0.096 0.904
47 H 0.084 0.916
48 H 0.133 0.867
49 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -0.067 -4.037 8.611 9.510
hybrid contribution 1.123 0.852 -0.684 1.567
sum 1.056 -3.185 7.927 8.608
Atomic orbital electron populations
1.69654 1.07329 1.29240 1.39280 1.25603 0.94366 0.99883 0.91811
0.87109 0.82485 0.81754 0.79884 1.20161 1.20588 1.15722 1.18953
0.92348 0.95849 1.45146 0.89083 1.17696 0.93830 0.89479 0.89164
1.21543 0.92357 1.07170 0.99275 1.20778 0.95893 0.99584 0.96105
1.20587 0.97658 1.07688 0.96783 1.20617 0.93205 0.99543 0.97889
1.20740 0.93909 1.07434 0.96255 1.21154 0.95744 0.92702 0.92396
1.62693 1.28704 1.12203 1.20685 1.22756 0.95084 0.97392 0.96508
1.22530 0.96093 0.89799 0.92683 1.87924 1.53746 1.33514 1.54499
1.21636 0.87399 0.93278 0.89495 1.21977 0.98119 0.97989 0.98977
1.21470 0.99429 0.96343 0.97976 1.21518 0.97879 0.97601 0.98457
1.21440 0.97831 0.97488 0.98270 1.21448 1.00086 0.95291 0.97098
1.23043 1.00356 0.91473 0.93912 0.91078 0.87819 0.88695 0.88763
0.88905 0.92599 0.89505 0.93473 0.91265 0.89826 0.92908 0.90787
0.91180 0.92903 0.92048 0.92253 0.92827 0.92669 0.91580 0.90353
0.91600 0.86668 0.92780
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.83 -20.99 13.92 55.55 0.77 -20.22 16
2 C 0.10 2.41 3.78 -17.34 -0.07 2.34 16
3 Si 0.86 19.63 25.08 -169.99 -4.26 15.36 16
4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
6 H -0.23 -5.30 5.17 56.52 0.29 -5.00 16
7 C -0.49 -12.18 5.76 -37.74 -0.22 -12.40 16
8 H 0.09 2.44 8.06 -52.48 -0.42 2.01 16
9 C 0.10 2.36 3.18 -106.82 -0.34 2.02 16
10 C -0.18 -4.10 9.80 -38.87 -0.38 -4.48 16
11 C -0.11 -2.12 10.02 -39.66 -0.40 -2.52 16
12 C -0.21 -4.12 10.05 -39.29 -0.39 -4.51 16
13 C -0.09 -1.91 8.28 -39.66 -0.33 -2.24 16
14 C -0.18 -3.96 2.26 -103.91 -0.23 -4.19 16
15 C 0.11 2.24 4.13 -4.98 -0.02 2.22 16
16 N -0.52 -10.10 4.30 -235.77 -1.01 -11.12 16
17 C 0.01 0.19 5.19 -3.72 -0.02 0.18 16
18 C 0.07 1.02 6.61 37.21 0.25 1.26 16
19 O -0.38 -6.58 8.94 -35.23 -0.31 -6.89 16
20 C 0.12 2.12 0.68 -90.62 -0.06 2.05 16
21 C -0.13 -2.14 4.26 -26.74 -0.11 -2.25 16
22 C -0.11 -1.57 5.78 -26.73 -0.15 -1.72 16
23 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16
24 C -0.11 -1.57 5.78 -26.72 -0.15 -1.72 16
25 C -0.10 -1.67 4.95 -26.75 -0.13 -1.80 16
26 C 0.04 0.81 2.69 -3.72 -0.01 0.80 16
27 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16
28 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16
29 H 0.09 1.66 8.06 -52.48 -0.42 1.23 16
30 H 0.09 1.63 8.06 -52.49 -0.42 1.20 16
31 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16
32 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16
33 H 0.09 1.98 3.23 -51.93 -0.17 1.81 16
34 H 0.05 0.90 6.50 -51.93 -0.34 0.56 16
35 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16
36 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16
37 H 0.05 0.78 6.49 -51.93 -0.34 0.44 16
38 H 0.07 1.23 6.11 -51.93 -0.32 0.91 16
39 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16
40 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16
41 H 0.06 0.86 7.68 -51.93 -0.40 0.46 16
42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
45 H 0.07 0.96 7.68 -51.93 -0.40 0.56 16
46 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16
47 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
48 H 0.12 2.68 6.34 -51.93 -0.33 2.35 16
49 H 0.05 1.25 5.80 -51.93 -0.30 0.95 16
LS Contribution 350.45 15.07 5.28 5.28
Total: -1.00 -25.11 350.45 -10.64 -35.76
By element:
Atomic # 1 Polarization: 18.63 SS G_CDS: -8.17 Total: 10.46 kcal
Atomic # 6 Polarization: -25.70 SS G_CDS: -2.94 Total: -28.63 kcal
Atomic # 7 Polarization: -31.10 SS G_CDS: -0.24 Total: -31.34 kcal
Atomic # 8 Polarization: -6.58 SS G_CDS: -0.31 Total: -6.89 kcal
Atomic # 14 Polarization: 19.63 SS G_CDS: -4.26 Total: 15.36 kcal
Total LS contribution 5.28 Total: 5.28 kcal
Total: -25.11 -10.64 -35.76 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001235530121.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.079 kcal
(2) G-P(sol) polarization free energy of solvation -25.115 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.035 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.643 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.757 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.678 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.17 seconds