Wall clock time and date at job start Tue Mar 31 2020 12:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86803 * 119.99893 * 2 1 4 4 H 1.48502 * 109.46931 * 264.17238 * 3 2 1 5 5 H 1.48505 * 109.46910 * 24.16728 * 3 2 1 6 6 H 1.48491 * 109.47165 * 144.16962 * 3 2 1 7 7 C 1.39943 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99651 * 17.08609 * 7 2 1 9 9 C 1.41391 * 119.99982 * 197.08501 * 7 2 1 10 10 C 1.40732 * 120.24400 * 235.01547 * 9 7 2 11 11 C 1.37602 * 119.74141 * 180.27728 * 10 9 7 12 12 C 1.38650 * 120.25319 * 359.51793 * 11 10 9 13 13 C 1.38621 * 120.49749 * 0.46423 * 12 11 10 14 14 C 1.37631 * 120.24974 * 359.79346 * 13 12 11 15 15 C 1.50702 * 120.13015 * 179.97438 * 14 13 12 16 16 N 1.46897 * 109.46710 * 266.39282 * 15 14 13 17 17 C 1.47008 * 111.00534 * 65.88064 * 16 15 14 18 18 C 1.53093 * 109.30082 * 177.63467 * 17 16 15 19 19 O 1.43026 * 109.24652 * 56.83320 * 18 17 16 20 20 C 1.42982 * 113.70653 * 301.35840 * 19 18 17 21 21 C 1.52982 * 109.45771 * 298.79049 * 20 19 18 22 22 C 1.53005 * 109.44993 * 299.94977 * 21 20 19 23 23 C 1.52993 * 109.46132 * 300.02497 * 22 21 20 24 24 C 1.53007 * 109.49785 * 59.99969 * 23 22 21 25 25 C 1.52949 * 109.49564 * 178.71245 * 20 19 18 26 26 C 1.47040 * 110.99974 * 302.25181 * 16 15 14 27 27 H 0.96993 * 119.99896 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.12735 * 0.02562 * 10 9 7 29 29 H 1.08009 * 119.87022 * 179.75274 * 11 10 9 30 30 H 1.07996 * 119.75495 * 180.23658 * 12 11 10 31 31 H 1.08002 * 119.87222 * 179.77125 * 13 12 11 32 32 H 1.08995 * 109.47088 * 26.38921 * 15 14 13 33 33 H 1.09001 * 109.47364 * 146.39567 * 15 14 13 34 34 H 1.09002 * 109.50173 * 297.58666 * 17 16 15 35 35 H 1.09000 * 109.49953 * 57.68610 * 17 16 15 36 36 H 1.09002 * 109.50868 * 176.76744 * 18 17 16 37 37 H 1.09001 * 109.50672 * 296.89890 * 18 17 16 38 38 H 1.08996 * 109.47506 * 59.94483 * 21 20 19 39 39 H 1.09009 * 109.46904 * 179.97438 * 21 20 19 40 40 H 1.09000 * 109.46903 * 180.02562 * 22 21 20 41 41 H 1.08992 * 109.47506 * 60.02733 * 22 21 20 42 42 H 1.09006 * 109.46763 * 299.99478 * 23 22 21 43 43 H 1.08999 * 109.46605 * 180.02562 * 23 22 21 44 44 H 1.09003 * 109.47173 * 180.02562 * 24 23 22 45 45 H 1.08998 * 109.46820 * 60.01736 * 24 23 22 46 46 H 1.08994 * 109.47651 * 180.02562 * 25 20 19 47 47 H 1.09004 * 109.47261 * 300.04757 * 25 20 19 48 48 H 1.08997 * 109.51040 * 302.27272 * 26 16 15 49 49 H 1.08997 * 109.50895 * 62.42798 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.6128 1.9753 -1.3929 5 1 1.3834 2.6851 0.5732 6 1 3.4727 1.4789 0.8195 7 6 2.0080 -1.2119 -0.0005 8 1 1.5038 -2.1265 -0.2758 9 6 3.3752 -1.2390 0.3592 10 6 4.3273 -1.7952 -0.5152 11 6 5.6543 -1.8214 -0.1522 12 6 6.0560 -1.2936 1.0653 13 6 5.1269 -0.7429 1.9343 14 6 3.7936 -0.7107 1.5943 15 6 2.7857 -0.1119 2.5413 16 7 2.2142 -1.1720 3.3824 17 6 3.2346 -1.7477 4.2704 18 6 2.5859 -2.8043 5.1685 19 8 1.9574 -3.7959 4.3515 20 6 0.9577 -3.2695 3.4752 21 6 -0.1555 -2.6232 4.3020 22 6 -0.7843 -3.6738 5.2194 23 6 -1.3686 -4.8061 4.3724 24 6 -0.2551 -5.4521 3.5455 25 6 0.3741 -4.4014 2.6282 26 6 1.5896 -2.2183 2.5595 27 1 -0.4849 0.8400 0.0004 28 1 4.0171 -2.2035 -1.4657 29 1 6.3863 -2.2514 -0.8200 30 1 7.1001 -1.3149 1.3405 31 1 5.4505 -0.3379 2.8817 32 1 3.2761 0.6286 3.1731 33 1 1.9905 0.3672 1.9702 34 1 4.0187 -2.2108 3.6715 35 1 3.6655 -0.9599 4.8883 36 1 3.3497 -3.2739 5.7882 37 1 1.8391 -2.3312 5.8061 38 1 0.2614 -1.8167 4.9052 39 1 -0.9176 -2.2214 3.6340 40 1 -1.5778 -3.2138 5.8083 41 1 -0.0225 -4.0756 5.8874 42 1 -2.1305 -4.4041 3.7045 43 1 -1.8170 -5.5544 5.0259 44 1 -0.6719 -6.2584 2.9419 45 1 0.5066 -5.8545 4.2133 46 1 -0.3876 -3.9998 1.9600 47 1 1.1680 -4.8614 2.0397 48 1 0.8192 -1.7742 1.9292 49 1 2.3470 -2.6893 1.9331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235530121.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:46 Heat of formation + Delta-G solvation = -24.677896 kcal Electronic energy + Delta-G solvation = -29034.162977 eV Core-core repulsion = 25539.317717 eV Total energy + Delta-G solvation = -3494.845261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.15920 -38.41328 -36.28106 -34.82134 -33.44711 -31.26619 -30.68238 -30.40054 -30.10641 -27.91596 -26.05824 -24.77151 -23.58165 -22.55247 -21.85095 -20.76505 -20.29502 -19.37927 -18.73325 -17.49373 -16.08451 -15.53586 -15.48154 -14.99393 -14.68405 -14.47915 -14.16736 -13.99485 -13.82915 -13.68376 -13.45512 -13.00339 -12.92122 -12.69974 -12.17000 -12.09983 -11.82622 -11.78366 -11.63729 -11.41246 -11.32259 -11.08553 -10.83815 -10.72316 -10.67267 -10.54626 -10.28717 -10.20935 -10.08999 -10.05470 -9.90376 -9.58959 -9.37962 -9.06687 -8.72475 -7.78231 -7.51395 -7.34393 -6.71804 -4.41575 2.45979 2.52918 3.11372 3.20240 3.29877 4.04820 4.23928 4.52901 4.67843 5.09144 5.11636 5.16104 5.21019 5.47733 5.53637 5.57508 5.64193 5.73978 5.76992 5.83332 5.88930 5.91482 5.92882 5.97525 6.02205 6.07417 6.09150 6.13172 6.32622 6.36045 6.37305 6.40298 6.49554 6.55214 6.56834 6.62064 6.72409 6.77324 6.78846 6.84412 6.88408 7.15157 7.22391 7.35914 7.47293 7.57703 7.73657 7.77923 7.86151 7.94550 8.04464 8.44068 8.65917 8.91771 10.31005 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014399 B = 0.006025 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.157398 B = 4645.815512 C = 5299.228237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.097 3.903 3 Si 0.863 3.137 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.234 1.234 7 C -0.491 4.491 8 H 0.091 0.909 9 C 0.101 3.899 10 C -0.184 4.184 11 C -0.105 4.105 12 C -0.208 4.208 13 C -0.094 4.094 14 C -0.181 4.181 15 C 0.107 3.893 16 N -0.520 5.520 17 C 0.011 3.989 18 C 0.066 3.934 19 O -0.378 6.378 20 C 0.121 3.879 21 C -0.133 4.133 22 C -0.115 4.115 23 C -0.117 4.117 24 C -0.113 4.113 25 C -0.101 4.101 26 C 0.040 3.960 27 H 0.279 0.721 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.115 0.885 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.542 -4.171 8.292 9.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.117 4.117 3 Si 0.688 3.312 4 H -0.202 1.202 5 H -0.206 1.206 6 H -0.157 1.157 7 C -0.523 4.523 8 H 0.109 0.891 9 C 0.098 3.902 10 C -0.203 4.203 11 C -0.124 4.124 12 C -0.227 4.227 13 C -0.113 4.113 14 C -0.183 4.183 15 C -0.020 4.020 16 N -0.243 5.243 17 C -0.117 4.117 18 C -0.011 4.011 19 O -0.297 6.297 20 C 0.082 3.918 21 C -0.171 4.171 22 C -0.152 4.152 23 C -0.155 4.155 24 C -0.150 4.150 25 C -0.139 4.139 26 C -0.088 4.088 27 H 0.089 0.911 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.096 0.904 47 H 0.084 0.916 48 H 0.133 0.867 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.067 -4.037 8.611 9.510 hybrid contribution 1.123 0.852 -0.684 1.567 sum 1.056 -3.185 7.927 8.608 Atomic orbital electron populations 1.69654 1.07329 1.29240 1.39280 1.25603 0.94366 0.99883 0.91811 0.87109 0.82485 0.81754 0.79884 1.20161 1.20588 1.15722 1.18953 0.92348 0.95849 1.45146 0.89083 1.17696 0.93830 0.89479 0.89164 1.21543 0.92357 1.07170 0.99275 1.20778 0.95893 0.99584 0.96105 1.20587 0.97658 1.07688 0.96783 1.20617 0.93205 0.99543 0.97889 1.20740 0.93909 1.07434 0.96255 1.21154 0.95744 0.92702 0.92396 1.62693 1.28704 1.12203 1.20685 1.22756 0.95084 0.97392 0.96508 1.22530 0.96093 0.89799 0.92683 1.87924 1.53746 1.33514 1.54499 1.21636 0.87399 0.93278 0.89495 1.21977 0.98119 0.97989 0.98977 1.21470 0.99429 0.96343 0.97976 1.21518 0.97879 0.97601 0.98457 1.21440 0.97831 0.97488 0.98270 1.21448 1.00086 0.95291 0.97098 1.23043 1.00356 0.91473 0.93912 0.91078 0.87819 0.88695 0.88763 0.88905 0.92599 0.89505 0.93473 0.91265 0.89826 0.92908 0.90787 0.91180 0.92903 0.92048 0.92253 0.92827 0.92669 0.91580 0.90353 0.91600 0.86668 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.99 13.92 55.55 0.77 -20.22 16 2 C 0.10 2.41 3.78 -17.34 -0.07 2.34 16 3 Si 0.86 19.63 25.08 -169.99 -4.26 15.36 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.23 -5.30 5.17 56.52 0.29 -5.00 16 7 C -0.49 -12.18 5.76 -37.74 -0.22 -12.40 16 8 H 0.09 2.44 8.06 -52.48 -0.42 2.01 16 9 C 0.10 2.36 3.18 -106.82 -0.34 2.02 16 10 C -0.18 -4.10 9.80 -38.87 -0.38 -4.48 16 11 C -0.11 -2.12 10.02 -39.66 -0.40 -2.52 16 12 C -0.21 -4.12 10.05 -39.29 -0.39 -4.51 16 13 C -0.09 -1.91 8.28 -39.66 -0.33 -2.24 16 14 C -0.18 -3.96 2.26 -103.91 -0.23 -4.19 16 15 C 0.11 2.24 4.13 -4.98 -0.02 2.22 16 16 N -0.52 -10.10 4.30 -235.77 -1.01 -11.12 16 17 C 0.01 0.19 5.19 -3.72 -0.02 0.18 16 18 C 0.07 1.02 6.61 37.21 0.25 1.26 16 19 O -0.38 -6.58 8.94 -35.23 -0.31 -6.89 16 20 C 0.12 2.12 0.68 -90.62 -0.06 2.05 16 21 C -0.13 -2.14 4.26 -26.74 -0.11 -2.25 16 22 C -0.11 -1.57 5.78 -26.73 -0.15 -1.72 16 23 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 24 C -0.11 -1.57 5.78 -26.72 -0.15 -1.72 16 25 C -0.10 -1.67 4.95 -26.75 -0.13 -1.80 16 26 C 0.04 0.81 2.69 -3.72 -0.01 0.80 16 27 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 28 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 29 H 0.09 1.66 8.06 -52.48 -0.42 1.23 16 30 H 0.09 1.63 8.06 -52.49 -0.42 1.20 16 31 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 33 H 0.09 1.98 3.23 -51.93 -0.17 1.81 16 34 H 0.05 0.90 6.50 -51.93 -0.34 0.56 16 35 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.78 6.49 -51.93 -0.34 0.44 16 38 H 0.07 1.23 6.11 -51.93 -0.32 0.91 16 39 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.86 7.68 -51.93 -0.40 0.46 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.96 7.68 -51.93 -0.40 0.56 16 46 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 47 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.12 2.68 6.34 -51.93 -0.33 2.35 16 49 H 0.05 1.25 5.80 -51.93 -0.30 0.95 16 LS Contribution 350.45 15.07 5.28 5.28 Total: -1.00 -25.11 350.45 -10.64 -35.76 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -8.17 Total: 10.46 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: -2.94 Total: -28.63 kcal Atomic # 7 Polarization: -31.10 SS G_CDS: -0.24 Total: -31.34 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.31 Total: -6.89 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.26 Total: 15.36 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -25.11 -10.64 -35.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235530121.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.079 kcal (2) G-P(sol) polarization free energy of solvation -25.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds