Wall clock time and date at job start Tue Mar 31 2020 12:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86803 * 119.99893 * 2 1 4 4 H 1.48502 * 109.46931 * 264.17238 * 3 2 1 5 5 H 1.48505 * 109.46910 * 24.16728 * 3 2 1 6 6 H 1.48491 * 109.47165 * 144.16962 * 3 2 1 7 7 C 1.39943 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99651 * 17.08609 * 7 2 1 9 9 C 1.41391 * 119.99982 * 197.08501 * 7 2 1 10 10 C 1.40732 * 120.24400 * 235.01547 * 9 7 2 11 11 C 1.37602 * 119.74141 * 180.27728 * 10 9 7 12 12 C 1.38650 * 120.25319 * 359.51793 * 11 10 9 13 13 C 1.38621 * 120.49749 * 0.46423 * 12 11 10 14 14 C 1.37631 * 120.24974 * 359.79346 * 13 12 11 15 15 C 1.50702 * 120.13015 * 179.97438 * 14 13 12 16 16 N 1.46897 * 109.46710 * 266.39282 * 15 14 13 17 17 C 1.47008 * 111.00534 * 65.88064 * 16 15 14 18 18 C 1.53093 * 109.30082 * 177.63467 * 17 16 15 19 19 O 1.43026 * 109.24652 * 56.83320 * 18 17 16 20 20 C 1.42982 * 113.70653 * 301.35840 * 19 18 17 21 21 C 1.52982 * 109.45771 * 298.79049 * 20 19 18 22 22 C 1.53005 * 109.44993 * 299.94977 * 21 20 19 23 23 C 1.52993 * 109.46132 * 300.02497 * 22 21 20 24 24 C 1.53007 * 109.49785 * 59.99969 * 23 22 21 25 25 C 1.52949 * 109.49564 * 178.71245 * 20 19 18 26 26 C 1.47040 * 110.99974 * 302.25181 * 16 15 14 27 27 H 0.96993 * 119.99896 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.12735 * 0.02562 * 10 9 7 29 29 H 1.08009 * 119.87022 * 179.75274 * 11 10 9 30 30 H 1.07996 * 119.75495 * 180.23658 * 12 11 10 31 31 H 1.08002 * 119.87222 * 179.77125 * 13 12 11 32 32 H 1.08995 * 109.47088 * 26.38921 * 15 14 13 33 33 H 1.09001 * 109.47364 * 146.39567 * 15 14 13 34 34 H 1.09002 * 109.50173 * 297.58666 * 17 16 15 35 35 H 1.09000 * 109.49953 * 57.68610 * 17 16 15 36 36 H 1.09002 * 109.50868 * 176.76744 * 18 17 16 37 37 H 1.09001 * 109.50672 * 296.89890 * 18 17 16 38 38 H 1.08996 * 109.47506 * 59.94483 * 21 20 19 39 39 H 1.09009 * 109.46904 * 179.97438 * 21 20 19 40 40 H 1.09000 * 109.46903 * 180.02562 * 22 21 20 41 41 H 1.08992 * 109.47506 * 60.02733 * 22 21 20 42 42 H 1.09006 * 109.46763 * 299.99478 * 23 22 21 43 43 H 1.08999 * 109.46605 * 180.02562 * 23 22 21 44 44 H 1.09003 * 109.47173 * 180.02562 * 24 23 22 45 45 H 1.08998 * 109.46820 * 60.01736 * 24 23 22 46 46 H 1.08994 * 109.47651 * 180.02562 * 25 20 19 47 47 H 1.09004 * 109.47261 * 300.04757 * 25 20 19 48 48 H 1.08997 * 109.51040 * 302.27272 * 26 16 15 49 49 H 1.08997 * 109.50895 * 62.42798 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.6128 1.9753 -1.3929 5 1 1.3834 2.6851 0.5732 6 1 3.4727 1.4789 0.8195 7 6 2.0080 -1.2119 -0.0005 8 1 1.5038 -2.1265 -0.2758 9 6 3.3752 -1.2390 0.3592 10 6 4.3273 -1.7952 -0.5152 11 6 5.6543 -1.8214 -0.1522 12 6 6.0560 -1.2936 1.0653 13 6 5.1269 -0.7429 1.9343 14 6 3.7936 -0.7107 1.5943 15 6 2.7857 -0.1119 2.5413 16 7 2.2142 -1.1720 3.3824 17 6 3.2346 -1.7477 4.2704 18 6 2.5859 -2.8043 5.1685 19 8 1.9574 -3.7959 4.3515 20 6 0.9577 -3.2695 3.4752 21 6 -0.1555 -2.6232 4.3020 22 6 -0.7843 -3.6738 5.2194 23 6 -1.3686 -4.8061 4.3724 24 6 -0.2551 -5.4521 3.5455 25 6 0.3741 -4.4014 2.6282 26 6 1.5896 -2.2183 2.5595 27 1 -0.4849 0.8400 0.0004 28 1 4.0171 -2.2035 -1.4657 29 1 6.3863 -2.2514 -0.8200 30 1 7.1001 -1.3149 1.3405 31 1 5.4505 -0.3379 2.8817 32 1 3.2761 0.6286 3.1731 33 1 1.9905 0.3672 1.9702 34 1 4.0187 -2.2108 3.6715 35 1 3.6655 -0.9599 4.8883 36 1 3.3497 -3.2739 5.7882 37 1 1.8391 -2.3312 5.8061 38 1 0.2614 -1.8167 4.9052 39 1 -0.9176 -2.2214 3.6340 40 1 -1.5778 -3.2138 5.8083 41 1 -0.0225 -4.0756 5.8874 42 1 -2.1305 -4.4041 3.7045 43 1 -1.8170 -5.5544 5.0259 44 1 -0.6719 -6.2584 2.9419 45 1 0.5066 -5.8545 4.2133 46 1 -0.3876 -3.9998 1.9600 47 1 1.1680 -4.8614 2.0397 48 1 0.8192 -1.7742 1.9292 49 1 2.3470 -2.6893 1.9331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235530121.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:45 Heat of formation + Delta-G solvation = -37.820878 kcal Electronic energy + Delta-G solvation = -29034.732900 eV Core-core repulsion = 25539.317717 eV Total energy + Delta-G solvation = -3495.415183 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.60598 -40.00386 -37.63146 -36.30710 -35.24486 -32.63847 -32.31498 -31.95611 -31.48631 -29.36378 -27.64993 -26.49238 -25.04815 -23.85627 -23.18020 -22.46051 -21.80019 -20.80562 -20.16406 -19.27390 -17.58879 -17.06586 -16.87344 -16.66219 -16.15391 -15.82301 -15.71998 -15.48369 -15.36209 -15.21765 -14.86545 -14.73487 -14.25007 -14.17973 -13.76864 -13.64991 -13.25900 -13.15721 -13.06207 -13.01215 -12.80261 -12.56875 -12.48077 -12.28265 -12.10738 -11.96676 -11.88756 -11.78004 -11.61057 -11.38392 -11.32211 -11.17655 -10.84527 -10.67700 -10.20587 -9.45118 -9.14543 -9.05382 -8.60259 -6.33382 0.76783 0.82184 1.28135 1.34858 1.44384 2.18429 2.74373 2.89398 3.12479 3.44296 3.85210 3.89847 3.92361 4.13436 4.18026 4.27244 4.28961 4.35092 4.36575 4.43354 4.48584 4.52239 4.61642 4.64581 4.66443 4.76560 4.79603 4.83708 4.92445 4.93316 4.95617 5.03081 5.09351 5.14160 5.17321 5.25370 5.31684 5.33976 5.36787 5.42699 5.49732 5.56005 5.60762 5.61775 5.79334 5.90012 6.07227 6.15000 6.28394 6.36121 6.44524 6.52538 6.85099 7.01842 8.46713 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014399 B = 0.006025 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.157398 B = 4645.815512 C = 5299.228237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.071 3.929 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.272 1.272 6 H -0.228 1.228 7 C -0.496 4.496 8 H 0.050 0.950 9 C 0.077 3.923 10 C -0.204 4.204 11 C -0.107 4.107 12 C -0.195 4.195 13 C -0.101 4.101 14 C -0.181 4.181 15 C 0.103 3.897 16 N -0.519 5.519 17 C 0.012 3.988 18 C 0.064 3.936 19 O -0.385 6.385 20 C 0.126 3.874 21 C -0.126 4.126 22 C -0.108 4.108 23 C -0.116 4.116 24 C -0.105 4.105 25 C -0.103 4.103 26 C 0.058 3.942 27 H 0.280 0.720 28 H 0.099 0.901 29 H 0.127 0.873 30 H 0.131 0.869 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.028 0.972 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.051 0.949 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.047 0.953 48 H 0.078 0.922 49 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.566 -4.326 11.026 12.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.211 1.211 5 H -0.197 1.197 6 H -0.151 1.151 7 C -0.529 4.529 8 H 0.068 0.932 9 C 0.075 3.925 10 C -0.223 4.223 11 C -0.126 4.126 12 C -0.214 4.214 13 C -0.120 4.120 14 C -0.184 4.184 15 C -0.024 4.024 16 N -0.242 5.242 17 C -0.116 4.116 18 C -0.013 4.013 19 O -0.305 6.305 20 C 0.087 3.913 21 C -0.164 4.164 22 C -0.145 4.145 23 C -0.153 4.153 24 C -0.143 4.143 25 C -0.141 4.141 26 C -0.070 4.070 27 H 0.090 0.910 28 H 0.117 0.883 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.139 0.861 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.112 0.888 36 H 0.132 0.868 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.066 0.934 48 H 0.096 0.904 49 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 1.973 -4.198 11.354 12.265 hybrid contribution 0.672 0.819 -1.537 1.867 sum 2.645 -3.379 9.817 10.714 Atomic orbital electron populations 1.69714 1.08305 1.29690 1.41721 1.26020 0.94707 1.01660 0.91562 0.86456 0.81874 0.79465 0.79179 1.21145 1.19738 1.15112 1.18707 0.93332 0.94520 1.46325 0.93242 1.17777 0.93291 0.91068 0.90378 1.21715 0.93669 1.07513 0.99381 1.21118 0.95326 0.99083 0.97036 1.21076 0.99382 1.05133 0.95796 1.20968 0.92444 0.99333 0.99228 1.20865 0.95064 1.06774 0.95657 1.21157 0.95064 0.93497 0.92690 1.62688 1.29526 1.11768 1.20169 1.22869 0.94062 0.98516 0.96155 1.22754 0.96973 0.89300 0.92244 1.87913 1.53756 1.34291 1.54500 1.21510 0.87820 0.92618 0.89398 1.21881 0.97124 0.98634 0.98761 1.21438 0.99891 0.95712 0.97508 1.21529 0.97300 0.97927 0.98543 1.21398 0.98087 0.96854 0.97918 1.21438 0.99321 0.95958 0.97387 1.22662 0.98429 0.91954 0.93962 0.90953 0.88291 0.85548 0.85133 0.86112 0.90602 0.91752 0.95320 0.88775 0.86811 0.91728 0.91168 0.93037 0.91118 0.91621 0.92592 0.90219 0.91195 0.91604 0.91882 0.93383 0.90379 0.96375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.78 13.92 21.83 0.30 -46.47 16 2 C 0.07 3.69 3.78 85.26 0.32 4.01 16 3 Si 0.91 41.44 25.08 68.60 1.72 43.16 16 4 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.23 -10.07 5.17 99.48 0.51 -9.56 16 7 C -0.50 -26.38 5.76 23.46 0.14 -26.24 16 8 H 0.05 2.95 8.06 -2.91 -0.02 2.93 16 9 C 0.08 3.72 3.18 -21.29 -0.07 3.65 16 10 C -0.20 -9.17 9.80 22.73 0.22 -8.95 16 11 C -0.11 -4.10 10.02 22.22 0.22 -3.88 16 12 C -0.20 -7.01 10.05 22.46 0.23 -6.78 16 13 C -0.10 -3.83 8.28 22.22 0.18 -3.65 16 14 C -0.18 -7.84 2.26 -19.40 -0.04 -7.89 16 15 C 0.10 4.30 4.13 85.56 0.35 4.65 16 16 N -0.52 -20.16 4.30 -899.83 -3.87 -24.03 16 17 C 0.01 0.40 5.19 86.31 0.45 0.84 16 18 C 0.06 1.80 6.61 72.01 0.48 2.28 16 19 O -0.39 -13.00 8.94 -148.98 -1.33 -14.34 16 20 C 0.13 4.50 0.68 -10.80 -0.01 4.49 16 21 C -0.13 -4.05 4.26 30.59 0.13 -3.92 16 22 C -0.11 -2.73 5.78 30.59 0.18 -2.56 16 23 C -0.12 -2.77 5.92 30.59 0.18 -2.59 16 24 C -0.11 -2.83 5.78 30.60 0.18 -2.66 16 25 C -0.10 -3.56 4.95 30.58 0.15 -3.40 16 26 C 0.06 2.50 2.69 86.30 0.23 2.73 16 27 H 0.28 14.20 8.30 -92.71 -0.77 13.43 16 28 H 0.10 4.41 8.06 -2.91 -0.02 4.38 16 29 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 30 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 31 H 0.12 3.90 8.06 -2.91 -0.02 3.88 16 32 H 0.08 2.80 8.03 -2.39 -0.02 2.78 16 33 H 0.06 3.00 3.23 -2.39 -0.01 2.99 16 34 H 0.03 1.04 6.50 -2.39 -0.02 1.02 16 35 H 0.09 2.57 8.12 -2.39 -0.02 2.55 16 36 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.06 1.70 6.49 -2.39 -0.02 1.69 16 38 H 0.07 2.28 6.11 -2.39 -0.01 2.26 16 39 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.07 1.63 7.68 -2.39 -0.02 1.62 16 42 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 43 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.07 1.80 7.68 -2.39 -0.02 1.78 16 46 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 47 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 48 H 0.08 3.95 6.34 -2.39 -0.02 3.93 16 49 H 0.02 0.89 5.80 -2.39 -0.01 0.88 16 Total: -1.00 -57.60 350.45 1.07 -56.53 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: 0.73 Total: 35.01 kcal Atomic # 6 Polarization: -53.38 SS G_CDS: 3.52 Total: -49.86 kcal Atomic # 7 Polarization: -66.94 SS G_CDS: -3.56 Total: -70.50 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -1.33 Total: -14.34 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.72 Total: 43.16 kcal Total: -57.60 1.07 -56.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235530121.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.706 kcal (2) G-P(sol) polarization free energy of solvation -57.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds