Wall clock time and date at job start Tue Mar 31 2020 10:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47296 * 2 1 4 4 C 1.46907 * 111.00229 * 297.19654 * 3 2 1 5 5 C 1.53001 * 109.46780 * 288.34026 * 4 3 2 6 6 C 1.46903 * 110.99806 * 61.14398 * 3 2 1 7 7 C 1.52997 * 109.46667 * 66.04740 * 6 3 2 8 8 N 1.46507 * 109.47096 * 179.97438 * 7 6 3 9 9 C 1.34672 * 125.86465 * 125.26608 * 8 7 6 10 10 C 1.36605 * 107.59788 * 180.14860 * 9 8 7 11 11 C 1.48256 * 126.24593 * 179.87361 * 10 9 8 12 12 C 1.40111 * 119.99640 * 359.70927 * 11 10 9 13 13 N 1.32139 * 120.29179 * 179.97438 * 12 11 10 14 14 C 1.31915 * 120.29400 * 0.02562 * 13 12 11 15 15 C 1.40782 * 119.97376 * 0.02562 * 14 13 12 16 16 C 1.41307 * 120.14155 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99899 * 7.61816 * 16 15 14 18 18 C 1.40045 * 119.99904 * 187.61727 * 16 15 14 19 19 N 1.30727 * 119.99983 * 7.57687 * 18 16 15 20 20 Si 1.86795 * 119.99579 * 187.57547 * 18 16 15 21 21 H 1.48493 * 109.47495 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46964 * 120.00123 * 20 18 16 23 23 H 1.48504 * 109.47183 * 239.99981 * 20 18 16 24 24 N 1.32530 * 119.98871 * 179.43721 * 11 10 9 25 25 C 1.40947 * 107.50149 * 359.60466 * 10 9 8 26 26 N 1.30621 * 108.06232 * 0.24904 * 25 10 9 27 27 H 1.09001 * 109.47052 * 181.22090 * 1 2 3 28 28 H 1.09002 * 109.46866 * 301.21525 * 1 2 3 29 29 H 1.08995 * 109.47767 * 61.21608 * 1 2 3 30 30 H 1.09006 * 109.46518 * 240.00437 * 2 1 3 31 31 H 1.08999 * 109.47508 * 120.00561 * 2 1 3 32 32 H 1.08997 * 109.46934 * 48.33847 * 4 3 2 33 33 H 1.08993 * 109.47404 * 168.33824 * 4 3 2 34 34 H 1.09000 * 109.47141 * 59.77819 * 5 4 3 35 35 H 1.09004 * 109.47038 * 179.78228 * 5 4 3 36 36 H 1.09005 * 109.46793 * 299.78347 * 5 4 3 37 37 H 1.09003 * 109.47402 * 306.05146 * 6 3 2 38 38 H 1.08993 * 109.47362 * 186.04708 * 6 3 2 39 39 H 1.08997 * 109.47282 * 60.00164 * 7 6 3 40 40 H 1.08998 * 109.47408 * 299.99619 * 7 6 3 41 41 H 1.08002 * 126.19980 * 0.03122 * 9 8 7 42 42 H 1.08004 * 119.85348 * 0.02562 * 12 11 10 43 43 H 1.07997 * 120.00821 * 180.02562 * 14 13 12 44 44 H 0.97002 * 120.00076 * 179.97438 * 19 18 16 45 45 H 1.08000 * 125.97239 * 180.22052 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6042 2.0903 -1.2199 5 6 2.3969 1.5544 -2.4138 6 6 1.5711 2.1019 1.2012 7 6 2.2263 1.4841 2.4381 8 7 1.7795 2.1995 3.6361 9 6 1.2078 1.6421 4.7206 10 6 0.9391 2.6457 5.6075 11 6 0.3064 2.4923 6.9395 12 6 -0.0817 1.2231 7.3887 13 7 -0.6456 1.0796 8.5751 14 6 -0.8486 2.1300 9.3468 15 6 -0.4643 3.4108 8.9068 16 6 -0.6806 4.5386 9.7303 17 1 -1.0266 4.4078 10.7451 18 6 -0.4464 5.8257 9.2307 19 7 -0.1718 5.9952 7.9639 20 14 -0.5266 7.3003 10.3746 21 1 -0.8522 6.8433 11.7494 22 1 0.7870 7.9930 10.3819 23 1 -1.5775 8.2370 9.9019 24 7 0.1129 3.5550 7.7074 25 6 1.3787 3.8528 5.0277 26 7 1.8785 3.5791 3.8524 27 1 -0.3633 -1.0274 0.0219 28 1 -0.3633 0.5326 0.8789 29 1 -0.3634 0.4948 -0.9006 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 0.5396 1.9284 -1.3884 33 1 1.7959 3.1572 -1.1058 34 1 2.2082 0.4867 -2.5254 35 1 2.0859 2.0751 -3.3195 36 1 3.4613 1.7198 -2.2469 37 1 0.4873 2.0244 1.2872 38 1 1.8554 3.1514 1.1253 39 1 3.3101 1.5616 2.3522 40 1 1.9419 0.4346 2.5140 41 1 0.9981 0.5922 4.8626 42 1 0.0816 0.3582 6.7628 43 1 -1.3095 2.0073 10.3157 44 1 -0.0099 6.8868 7.6178 45 1 1.3133 4.8330 5.4766 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239194149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:16 Heat of formation + Delta-G solvation = 121.545654 kcal Electronic energy + Delta-G solvation = -25349.963204 eV Core-core repulsion = 21790.211079 eV Total energy + Delta-G solvation = -3559.752124 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.75085 -38.88943 -38.60149 -34.06263 -33.85893 -32.17628 -31.63165 -30.94310 -30.30826 -28.68382 -27.02701 -25.85038 -24.68593 -23.10844 -22.71670 -22.02549 -20.29396 -19.96915 -19.50411 -17.44335 -17.10146 -16.53952 -16.01946 -15.41459 -15.18190 -15.10346 -14.80536 -14.56705 -14.17604 -13.81170 -13.58939 -13.38007 -13.17173 -12.85508 -12.66294 -12.56581 -12.35349 -12.22893 -11.84517 -11.73513 -11.63921 -11.52882 -11.39706 -11.32210 -11.20058 -10.78090 -10.70158 -10.37055 -10.13072 -9.83495 -9.51095 -9.40033 -8.99056 -8.62692 -8.34994 -7.39474 -7.15957 -6.54811 -4.65694 1.98861 2.57948 2.71404 2.88960 3.04527 3.08713 3.20631 3.67800 3.74760 3.85943 4.44161 4.58623 4.70952 4.79890 4.82263 4.89990 4.98710 5.05856 5.16805 5.18197 5.24693 5.28817 5.38646 5.49219 5.64676 5.65886 5.68833 5.74469 5.84882 5.85133 5.85623 6.01563 6.05736 6.10465 6.18097 6.47150 6.69507 6.73968 6.77070 6.95164 7.06176 7.20307 7.26491 7.36675 7.67819 8.06307 8.18881 8.44730 8.68138 9.27862 9.86788 10.14083 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.020676 B = 0.002679 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.918701 B =10450.350391 C =11437.652619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.041 3.959 3 N -0.534 5.534 4 C 0.045 3.955 5 C -0.146 4.146 6 C 0.040 3.960 7 C 0.145 3.855 8 N -0.380 5.380 9 C 0.060 3.940 10 C -0.161 4.161 11 C 0.184 3.816 12 C -0.116 4.116 13 N -0.428 5.428 14 C -0.074 4.074 15 C 0.215 3.785 16 C -0.416 4.416 17 H 0.090 0.910 18 C 0.070 3.930 19 N -0.712 5.712 20 Si 0.911 3.089 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.273 1.273 24 N -0.451 5.451 25 C 0.096 3.904 26 N -0.313 5.313 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.172 0.828 42 H 0.121 0.879 43 H 0.132 0.868 44 H 0.277 0.723 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.686 -6.275 -16.548 18.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.087 4.087 3 N -0.258 5.258 4 C -0.082 4.082 5 C -0.204 4.204 6 C -0.088 4.088 7 C 0.022 3.978 8 N -0.162 5.162 9 C -0.087 4.087 10 C -0.174 4.174 11 C 0.035 3.965 12 C -0.275 4.275 13 N -0.140 5.140 14 C -0.243 4.243 15 C 0.089 3.911 16 C -0.448 4.448 17 H 0.108 0.892 18 C -0.156 4.156 19 N -0.333 5.333 20 Si 0.734 3.266 21 H -0.182 1.182 22 H -0.196 1.196 23 H -0.198 1.198 24 N -0.168 5.168 25 C -0.092 4.092 26 N -0.134 5.134 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.189 0.811 42 H 0.139 0.861 43 H 0.149 0.851 44 H 0.088 0.912 45 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 4.852 -5.714 -17.890 19.397 hybrid contribution -1.397 0.273 1.206 1.866 sum 3.455 -5.441 -16.684 17.886 Atomic orbital electron populations 1.22446 0.98118 1.02657 1.02358 1.22278 0.93095 0.90271 1.03007 1.62194 1.59513 1.02337 1.01794 1.22137 0.97821 0.98567 0.89689 1.21764 1.01109 1.00945 0.96548 1.22391 0.98304 0.99379 0.88759 1.21485 1.00421 0.94497 0.81364 1.48272 1.48339 1.05781 1.13821 1.22405 0.99023 0.99235 0.88046 1.18750 1.10362 0.92231 0.96072 1.19890 0.93690 0.91074 0.91849 1.22354 1.12901 0.95787 0.96475 1.67601 1.08574 1.33842 1.03957 1.23121 1.10112 0.90143 1.00925 1.19327 0.89254 0.92722 0.89827 1.19632 1.36721 0.89444 0.99004 0.89151 1.26082 0.93379 1.00768 0.95385 1.70008 1.26286 1.23735 1.13275 0.86215 0.78774 0.80400 0.81174 1.18230 1.19635 1.19785 1.69435 1.15538 1.27321 1.04555 1.24211 0.94238 1.00241 0.90481 1.77169 1.25775 0.91002 1.19426 0.91820 0.92091 0.92327 0.90295 0.90471 0.94108 0.90746 0.92764 0.92394 0.91832 0.93566 0.89214 0.89342 0.89155 0.81094 0.86105 0.85089 0.91193 0.78909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.52 9.28 37.16 0.34 -1.17 16 2 C 0.04 0.31 5.70 -3.83 -0.02 0.29 16 3 N -0.53 -4.78 4.67 -234.63 -1.10 -5.87 16 4 C 0.05 0.37 5.55 -3.82 -0.02 0.35 16 5 C -0.15 -0.98 9.96 37.16 0.37 -0.61 16 6 C 0.04 0.43 4.91 -3.82 -0.02 0.41 16 7 C 0.14 1.62 6.42 -4.04 -0.03 1.59 16 8 N -0.38 -5.89 3.67 -61.09 -0.22 -6.11 16 9 C 0.06 1.00 10.83 -16.90 -0.18 0.81 16 10 C -0.16 -3.34 6.07 -105.34 -0.64 -3.98 16 11 C 0.18 4.45 6.76 -82.74 -0.56 3.89 16 12 C -0.12 -2.71 10.76 -16.72 -0.18 -2.89 16 13 N -0.43 -10.67 10.47 -12.05 -0.13 -10.80 16 14 C -0.07 -1.86 10.97 -16.56 -0.18 -2.04 16 15 C 0.22 5.79 6.51 -84.84 -0.55 5.24 16 16 C -0.42 -10.66 9.15 -37.74 -0.35 -11.00 16 17 H 0.09 2.14 7.86 -52.48 -0.41 1.73 16 18 C 0.07 1.70 5.47 -17.34 -0.09 1.61 16 19 N -0.71 -17.88 11.60 55.55 0.64 -17.24 16 20 Si 0.91 17.80 29.57 -169.99 -5.03 12.77 16 21 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 22 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 23 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 24 N -0.45 -12.07 7.91 -7.50 -0.06 -12.13 16 25 C 0.10 1.95 11.79 -17.04 -0.20 1.75 16 26 N -0.31 -5.76 12.37 30.82 0.38 -5.38 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.56 6.24 -51.93 -0.32 0.23 16 29 H 0.06 0.45 6.30 -51.93 -0.33 0.12 16 30 H 0.08 0.53 6.58 -51.93 -0.34 0.19 16 31 H 0.08 0.54 6.42 -51.93 -0.33 0.21 16 32 H 0.04 0.33 5.90 -51.93 -0.31 0.02 16 33 H 0.07 0.63 7.82 -51.93 -0.41 0.23 16 34 H 0.05 0.34 6.69 -51.93 -0.35 0.00 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.54 6.01 -51.93 -0.31 0.23 16 38 H 0.09 1.11 7.86 -51.93 -0.41 0.70 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.09 0.81 6.45 -51.93 -0.34 0.47 16 41 H 0.17 2.28 7.27 -52.49 -0.38 1.89 16 42 H 0.12 2.41 7.00 -52.48 -0.37 2.04 16 43 H 0.13 3.00 8.06 -52.49 -0.42 2.58 16 44 H 0.28 6.26 8.29 -40.82 -0.34 5.92 16 45 H 0.19 4.09 8.06 -52.49 -0.42 3.67 16 LS Contribution 367.09 15.07 5.53 5.53 Total: -1.00 -29.99 367.09 -8.56 -38.54 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.27 Total: 6.45 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -2.31 Total: -5.76 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.48 Total: -57.54 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.99 -8.56 -38.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239194149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.090 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds