Wall clock time and date at job start Tue Mar 31 2020 10:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47296 * 2 1 4 4 C 1.46907 * 111.00229 * 297.19654 * 3 2 1 5 5 C 1.53001 * 109.46780 * 288.34026 * 4 3 2 6 6 C 1.46903 * 110.99806 * 61.14398 * 3 2 1 7 7 C 1.52997 * 109.46667 * 66.04740 * 6 3 2 8 8 N 1.46507 * 109.47096 * 179.97438 * 7 6 3 9 9 C 1.34672 * 125.86465 * 125.26608 * 8 7 6 10 10 C 1.36605 * 107.59788 * 180.14860 * 9 8 7 11 11 C 1.48256 * 126.24593 * 179.87361 * 10 9 8 12 12 C 1.40111 * 119.99640 * 359.70927 * 11 10 9 13 13 N 1.32139 * 120.29179 * 179.97438 * 12 11 10 14 14 C 1.31915 * 120.29400 * 0.02562 * 13 12 11 15 15 C 1.40782 * 119.97376 * 0.02562 * 14 13 12 16 16 C 1.41307 * 120.14155 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99899 * 7.61816 * 16 15 14 18 18 C 1.40045 * 119.99904 * 187.61727 * 16 15 14 19 19 N 1.30727 * 119.99983 * 7.57687 * 18 16 15 20 20 Si 1.86795 * 119.99579 * 187.57547 * 18 16 15 21 21 H 1.48493 * 109.47495 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46964 * 120.00123 * 20 18 16 23 23 H 1.48504 * 109.47183 * 239.99981 * 20 18 16 24 24 N 1.32530 * 119.98871 * 179.43721 * 11 10 9 25 25 C 1.40947 * 107.50149 * 359.60466 * 10 9 8 26 26 N 1.30621 * 108.06232 * 0.24904 * 25 10 9 27 27 H 1.09001 * 109.47052 * 181.22090 * 1 2 3 28 28 H 1.09002 * 109.46866 * 301.21525 * 1 2 3 29 29 H 1.08995 * 109.47767 * 61.21608 * 1 2 3 30 30 H 1.09006 * 109.46518 * 240.00437 * 2 1 3 31 31 H 1.08999 * 109.47508 * 120.00561 * 2 1 3 32 32 H 1.08997 * 109.46934 * 48.33847 * 4 3 2 33 33 H 1.08993 * 109.47404 * 168.33824 * 4 3 2 34 34 H 1.09000 * 109.47141 * 59.77819 * 5 4 3 35 35 H 1.09004 * 109.47038 * 179.78228 * 5 4 3 36 36 H 1.09005 * 109.46793 * 299.78347 * 5 4 3 37 37 H 1.09003 * 109.47402 * 306.05146 * 6 3 2 38 38 H 1.08993 * 109.47362 * 186.04708 * 6 3 2 39 39 H 1.08997 * 109.47282 * 60.00164 * 7 6 3 40 40 H 1.08998 * 109.47408 * 299.99619 * 7 6 3 41 41 H 1.08002 * 126.19980 * 0.03122 * 9 8 7 42 42 H 1.08004 * 119.85348 * 0.02562 * 12 11 10 43 43 H 1.07997 * 120.00821 * 180.02562 * 14 13 12 44 44 H 0.97002 * 120.00076 * 179.97438 * 19 18 16 45 45 H 1.08000 * 125.97239 * 180.22052 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6042 2.0903 -1.2199 5 6 2.3969 1.5544 -2.4138 6 6 1.5711 2.1019 1.2012 7 6 2.2263 1.4841 2.4381 8 7 1.7795 2.1995 3.6361 9 6 1.2078 1.6421 4.7206 10 6 0.9391 2.6457 5.6075 11 6 0.3064 2.4923 6.9395 12 6 -0.0817 1.2231 7.3887 13 7 -0.6456 1.0796 8.5751 14 6 -0.8486 2.1300 9.3468 15 6 -0.4643 3.4108 8.9068 16 6 -0.6806 4.5386 9.7303 17 1 -1.0266 4.4078 10.7451 18 6 -0.4464 5.8257 9.2307 19 7 -0.1718 5.9952 7.9639 20 14 -0.5266 7.3003 10.3746 21 1 -0.8522 6.8433 11.7494 22 1 0.7870 7.9930 10.3819 23 1 -1.5775 8.2370 9.9019 24 7 0.1129 3.5550 7.7074 25 6 1.3787 3.8528 5.0277 26 7 1.8785 3.5791 3.8524 27 1 -0.3633 -1.0274 0.0219 28 1 -0.3633 0.5326 0.8789 29 1 -0.3634 0.4948 -0.9006 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 0.5396 1.9284 -1.3884 33 1 1.7959 3.1572 -1.1058 34 1 2.2082 0.4867 -2.5254 35 1 2.0859 2.0751 -3.3195 36 1 3.4613 1.7198 -2.2469 37 1 0.4873 2.0244 1.2872 38 1 1.8554 3.1514 1.1253 39 1 3.3101 1.5616 2.3522 40 1 1.9419 0.4346 2.5140 41 1 0.9981 0.5922 4.8626 42 1 0.0816 0.3582 6.7628 43 1 -1.3095 2.0073 10.3157 44 1 -0.0099 6.8868 7.6178 45 1 1.3133 4.8330 5.4766 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239194149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:15 Heat of formation + Delta-G solvation = 102.379067 kcal Electronic energy + Delta-G solvation = -25350.794329 eV Core-core repulsion = 21790.211079 eV Total energy + Delta-G solvation = -3560.583250 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.16861 -40.53888 -39.52793 -35.88321 -35.08259 -33.86086 -32.71920 -32.30402 -31.33657 -30.11687 -28.12416 -27.64960 -25.39420 -24.55114 -24.18714 -23.54314 -21.48540 -21.32134 -20.54657 -19.27902 -18.37302 -17.36140 -17.27941 -17.03926 -16.66940 -16.56847 -16.16152 -15.65961 -15.40594 -14.98433 -14.76863 -14.66671 -14.36042 -13.99948 -13.87650 -13.71952 -13.34462 -13.26807 -13.16651 -12.96239 -12.94690 -12.58403 -12.55224 -12.42037 -12.33057 -12.01067 -11.89039 -11.68291 -11.61819 -11.40206 -11.34498 -11.17690 -10.36384 -10.13411 -9.33985 -9.26718 -8.81794 -8.37456 -6.58653 0.36643 0.99068 1.15080 1.43041 1.52423 1.54179 1.58675 2.07851 2.21532 2.88138 2.91166 3.45587 3.81456 3.91249 3.94359 3.96214 4.00847 4.13029 4.23296 4.24242 4.33293 4.37041 4.37737 4.42744 4.54863 4.55216 4.64217 4.69573 4.72510 4.83217 4.94236 4.99486 5.01814 5.09747 5.12704 5.13486 5.25768 5.28471 5.38144 5.43024 5.64656 5.83832 5.95717 6.05735 6.13996 6.18533 6.56197 6.73121 6.78050 7.38499 7.99018 8.35152 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.020676 B = 0.002679 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.918701 B =10450.350391 C =11437.652619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.040 3.960 3 N -0.535 5.535 4 C 0.043 3.957 5 C -0.140 4.140 6 C 0.050 3.950 7 C 0.138 3.862 8 N -0.364 5.364 9 C 0.094 3.906 10 C -0.205 4.205 11 C 0.177 3.823 12 C -0.119 4.119 13 N -0.436 5.436 14 C -0.100 4.100 15 C 0.184 3.816 16 C -0.444 4.444 17 H 0.100 0.900 18 C 0.027 3.973 19 N -0.745 5.745 20 Si 0.990 3.010 21 H -0.251 1.251 22 H -0.268 1.268 23 H -0.265 1.265 24 N -0.482 5.482 25 C 0.080 3.920 26 N -0.321 5.321 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.037 0.963 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.125 0.875 41 H 0.215 0.785 42 H 0.160 0.840 43 H 0.144 0.856 44 H 0.284 0.716 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.220 -7.768 -17.930 19.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.087 4.087 3 N -0.259 5.259 4 C -0.085 4.085 5 C -0.198 4.198 6 C -0.079 4.079 7 C 0.018 3.982 8 N -0.145 5.145 9 C -0.055 4.055 10 C -0.218 4.218 11 C 0.028 3.972 12 C -0.279 4.279 13 N -0.147 5.147 14 C -0.267 4.267 15 C 0.058 3.942 16 C -0.475 4.475 17 H 0.118 0.882 18 C -0.197 4.197 19 N -0.366 5.366 20 Si 0.810 3.190 21 H -0.174 1.174 22 H -0.193 1.193 23 H -0.190 1.190 24 N -0.200 5.200 25 C -0.106 4.106 26 N -0.142 5.142 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.087 0.913 39 H 0.115 0.885 40 H 0.143 0.857 41 H 0.231 0.769 42 H 0.177 0.823 43 H 0.162 0.838 44 H 0.095 0.905 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.388 -7.217 -19.291 21.290 hybrid contribution -1.499 0.612 1.393 2.136 sum 3.889 -6.605 -17.898 19.470 Atomic orbital electron populations 1.22410 0.98256 1.03065 1.01488 1.22384 0.92913 0.89273 1.04165 1.62230 1.59519 1.02999 1.01193 1.22189 0.98176 0.98192 0.89941 1.21718 1.00445 1.01425 0.96172 1.22184 0.97640 0.98516 0.89587 1.21900 1.00951 0.95689 0.79664 1.48634 1.46390 1.04867 1.14616 1.22876 0.95947 1.00131 0.86587 1.18750 1.13361 0.93706 0.96010 1.20426 0.92965 0.90980 0.92827 1.22938 1.11815 0.96829 0.96340 1.67631 1.08846 1.33644 1.04603 1.23275 1.11500 0.90049 1.01892 1.19777 0.90015 0.93860 0.90531 1.20021 1.37647 0.90287 0.99537 0.88219 1.27014 0.92442 1.03320 0.96921 1.70096 1.26510 1.24903 1.15065 0.85029 0.78803 0.76156 0.78991 1.17415 1.19316 1.19023 1.69427 1.16596 1.28918 1.05071 1.23930 0.95553 0.99790 0.91368 1.77128 1.25726 0.92976 1.18403 0.90714 0.93605 0.92599 0.89061 0.89428 0.94030 0.91668 0.92045 0.91430 0.92359 0.94445 0.91314 0.88488 0.85679 0.76900 0.82259 0.83847 0.90508 0.81116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.49 9.28 71.98 0.67 -1.82 16 2 C 0.04 0.47 5.70 86.30 0.49 0.97 16 3 N -0.54 -8.39 4.67 -896.22 -4.19 -12.57 16 4 C 0.04 0.63 5.55 86.30 0.48 1.11 16 5 C -0.14 -1.60 9.96 71.98 0.72 -0.88 16 6 C 0.05 0.98 4.91 86.30 0.42 1.40 16 7 C 0.14 2.66 6.42 86.38 0.55 3.22 16 8 N -0.36 -10.47 3.67 -347.20 -1.27 -11.74 16 9 C 0.09 2.87 10.83 83.88 0.91 3.78 16 10 C -0.21 -8.46 6.07 -20.33 -0.12 -8.59 16 11 C 0.18 8.66 6.76 42.16 0.29 8.95 16 12 C -0.12 -5.48 10.76 85.10 0.92 -4.57 16 13 N -0.44 -21.70 10.47 -192.03 -2.01 -23.71 16 14 C -0.10 -5.17 10.97 85.30 0.94 -4.23 16 15 C 0.18 10.28 6.51 40.21 0.26 10.55 16 16 C -0.44 -23.41 9.15 23.46 0.21 -23.20 16 17 H 0.10 4.84 7.86 -2.91 -0.02 4.82 16 18 C 0.03 1.31 5.47 85.30 0.47 1.78 16 19 N -0.74 -38.74 11.60 21.84 0.25 -38.49 16 20 Si 0.99 36.88 29.57 68.60 2.03 38.91 16 21 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16 22 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 23 H -0.27 -9.50 7.11 99.48 0.71 -8.80 16 24 N -0.48 -26.76 7.91 -177.64 -1.41 -28.16 16 25 C 0.08 3.36 11.79 85.54 1.01 4.37 16 26 N -0.32 -11.74 12.37 -56.42 -0.70 -12.44 16 27 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.04 0.74 6.24 -2.39 -0.01 0.72 16 29 H 0.06 0.74 6.30 -2.39 -0.02 0.73 16 30 H 0.09 0.90 6.58 -2.38 -0.02 0.89 16 31 H 0.09 0.86 6.42 -2.39 -0.02 0.85 16 32 H 0.04 0.61 5.90 -2.39 -0.01 0.60 16 33 H 0.06 1.07 7.82 -2.39 -0.02 1.05 16 34 H 0.06 0.62 6.69 -2.39 -0.02 0.60 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.04 0.81 6.01 -2.39 -0.01 0.80 16 38 H 0.07 1.66 7.86 -2.39 -0.02 1.64 16 39 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.13 1.62 6.45 -2.39 -0.02 1.61 16 41 H 0.21 4.57 7.27 -2.91 -0.02 4.55 16 42 H 0.16 5.85 7.00 -2.91 -0.02 5.83 16 43 H 0.14 6.77 8.06 -2.91 -0.02 6.75 16 44 H 0.28 13.29 8.29 -92.71 -0.77 12.53 16 45 H 0.17 7.79 8.06 -2.91 -0.02 7.77 16 Total: -1.00 -67.76 367.09 1.92 -65.84 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 1.00 Total: 29.54 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 8.21 Total: -7.17 kcal Atomic # 7 Polarization: -117.80 SS G_CDS: -9.32 Total: -127.12 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 2.03 Total: 38.91 kcal Total: -67.76 1.92 -65.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239194149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.215 kcal (2) G-P(sol) polarization free energy of solvation -67.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds