Wall clock time and date at job start Tue Mar 31 2020 10:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47054 * 2 1 4 4 H 1.09001 * 109.47002 * 304.99688 * 3 2 1 5 5 C 1.50698 * 109.47184 * 185.00283 * 3 2 1 6 6 H 1.08003 * 120.00057 * 240.00090 * 5 3 2 7 7 C 1.37876 * 120.00356 * 59.99290 * 5 3 2 8 8 N 1.31519 * 119.99989 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00260 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46926 * 60.00146 * 9 7 5 11 11 H 1.48500 * 109.47454 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47297 * 300.00528 * 9 7 5 13 13 N 1.46492 * 109.47363 * 64.99814 * 3 2 1 14 14 C 1.37102 * 124.98616 * 59.69933 * 13 3 2 15 15 C 1.34310 * 109.80765 * 179.81512 * 14 13 3 16 16 C 1.46161 * 106.80785 * 0.43421 * 15 14 13 17 17 C 1.36775 * 124.98941 * 240.00390 * 13 3 2 18 18 N 1.33198 * 134.29670 * 0.02562 * 17 13 3 19 19 C 1.31556 * 120.71037 * 179.97438 * 18 17 13 20 20 N 1.32077 * 122.71650 * 359.97438 * 19 18 17 21 21 C 1.32993 * 121.03040 * 359.97438 * 20 19 18 22 22 N 1.38328 * 120.83490 * 180.02562 * 21 20 19 23 23 C 1.46960 * 110.99567 * 236.18225 * 22 21 20 24 24 C 1.53053 * 109.35883 * 183.19189 * 23 22 21 25 25 N 1.46958 * 109.36344 * 301.59196 * 24 23 22 26 26 C 1.46956 * 110.87588 * 59.32679 * 25 24 23 27 27 C 1.46958 * 111.00142 * 359.97438 * 22 21 20 28 28 H 1.09002 * 109.47069 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47018 * 300.00144 * 1 2 3 30 30 H 1.08995 * 109.47070 * 60.00530 * 1 2 3 31 31 H 1.08997 * 109.47394 * 239.99542 * 2 1 3 32 32 H 1.09004 * 109.47644 * 119.99613 * 2 1 3 33 33 H 0.96996 * 119.99885 * 179.97438 * 8 7 5 34 34 H 1.07996 * 125.09593 * 359.97438 * 14 13 3 35 35 H 1.07996 * 126.59447 * 180.16276 * 15 14 13 36 36 H 1.08000 * 118.64242 * 179.97438 * 19 18 17 37 37 H 1.08995 * 109.49059 * 303.14938 * 23 22 21 38 38 H 1.08991 * 109.49028 * 63.22428 * 23 22 21 39 39 H 1.09006 * 109.48963 * 181.63150 * 24 23 22 40 40 H 1.08999 * 109.51139 * 61.57687 * 24 23 22 41 41 H 1.00900 * 111.00276 * 295.46060 * 25 24 23 42 42 H 1.09002 * 109.48914 * 180.71187 * 26 25 24 43 43 H 1.09001 * 109.51013 * 60.65892 * 26 25 24 44 44 H 1.08998 * 109.48790 * 296.78263 * 27 22 21 45 45 H 1.09006 * 109.48359 * 56.84449 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8801 -1.3812 10 1 6.5966 0.1454 -0.2343 11 1 6.3979 0.2167 -2.6503 12 1 6.5005 2.2800 -1.3808 13 7 1.6524 2.0976 1.2517 14 6 2.0197 1.6790 2.5045 15 6 1.5000 2.5020 3.4300 16 6 0.7344 3.5178 2.7100 17 6 0.8662 3.2131 1.3424 18 7 0.2554 3.9954 0.4541 19 6 -0.4555 5.0303 0.8469 20 7 -0.6056 5.3518 2.1192 21 6 -0.0352 4.6309 3.0803 22 7 -0.1955 4.9710 4.4115 23 6 1.1060 5.1654 5.0657 24 6 0.8879 5.4611 6.5515 25 7 0.0471 6.6583 6.6917 26 6 -1.2543 6.4638 6.0375 27 6 -1.0362 6.1681 4.5518 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0605 -2.9502 34 1 2.6368 0.8181 2.7155 35 1 1.6207 2.4251 4.5004 36 1 -0.9362 5.6424 0.0982 37 1 1.7053 4.2613 4.9592 38 1 1.6252 6.0033 4.6006 39 1 1.8504 5.6344 7.0330 40 1 0.3932 4.6119 7.0229 41 1 0.5163 7.4743 6.3282 42 1 -1.8537 7.3679 6.1441 43 1 -1.7740 5.6261 6.5026 44 1 -0.5412 7.0173 4.0807 45 1 -1.9987 5.9949 4.0703 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:40 Heat of formation + Delta-G solvation = 98.693678 kcal Electronic energy + Delta-G solvation = -26897.099664 eV Core-core repulsion = 23336.356604 eV Total energy + Delta-G solvation = -3560.743060 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.48326 -39.59395 -38.07875 -35.02512 -34.77543 -32.01839 -31.78675 -31.22664 -30.03688 -28.76859 -27.04577 -25.76177 -24.03955 -23.42519 -22.70056 -22.16772 -21.10278 -20.68173 -19.28542 -17.57160 -17.25703 -16.56415 -15.93671 -15.44469 -15.25617 -15.01671 -14.87496 -14.58613 -14.43416 -14.20495 -13.96970 -13.32818 -13.18876 -12.99233 -12.81326 -12.56629 -12.32238 -12.08646 -11.77718 -11.56401 -11.47433 -11.44479 -11.19345 -11.07851 -10.91753 -10.66201 -10.37290 -10.31137 -10.18144 -9.97673 -9.42380 -8.95454 -8.71143 -8.65656 -8.62618 -8.08170 -7.30374 -6.31315 -4.42552 1.31457 1.90479 3.15586 3.18838 3.21492 3.23223 3.35933 3.52749 4.05982 4.20137 4.38817 4.53949 4.83344 4.86704 4.98040 4.99520 5.01782 5.04091 5.12813 5.29909 5.35531 5.42500 5.61953 5.64966 5.74636 5.85721 5.90465 5.97837 6.04345 6.06877 6.14545 6.26255 6.49094 6.51276 6.65204 6.72657 6.77797 6.86437 6.94221 7.08712 7.13246 7.28209 7.43832 7.51554 7.64065 7.78204 8.01932 8.04430 8.60004 8.78528 9.25116 10.73217 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.019749 B = 0.003652 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.448602 B = 7665.445382 C = 8138.087556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.259 3.741 4 H 0.066 0.934 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.071 3.929 8 N -0.883 5.883 9 Si 0.905 3.095 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.275 1.275 13 N -0.420 5.420 14 C 0.086 3.914 15 C -0.208 4.208 16 C -0.220 4.220 17 C 0.326 3.674 18 N -0.532 5.532 19 C 0.316 3.684 20 N -0.589 5.589 21 C 0.391 3.609 22 N -0.465 5.465 23 C 0.018 3.982 24 C 0.060 3.940 25 N -0.688 5.688 26 C 0.056 3.944 27 C 0.029 3.971 28 H 0.039 0.961 29 H 0.034 0.966 30 H 0.047 0.953 31 H 0.111 0.889 32 H 0.042 0.958 33 H 0.268 0.732 34 H 0.171 0.829 35 H 0.144 0.856 36 H 0.190 0.810 37 H 0.101 0.899 38 H 0.042 0.958 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.339 0.661 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.049 0.951 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.704 7.445 13.291 16.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.167 4.167 3 C 0.161 3.839 4 H 0.084 0.916 5 C -0.577 4.577 6 H 0.082 0.918 7 C -0.133 4.133 8 N -0.520 5.520 9 Si 0.732 3.268 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.201 1.201 13 N -0.099 5.099 14 C -0.043 4.043 15 C -0.234 4.234 16 C -0.233 4.233 17 C 0.085 3.915 18 N -0.252 5.252 19 C 0.024 3.976 20 N -0.313 5.313 21 C 0.146 3.854 22 N -0.183 5.183 23 C -0.109 4.109 24 C -0.070 4.070 25 N -0.316 5.316 26 C -0.074 4.074 27 C -0.100 4.100 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.129 0.871 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.188 0.812 35 H 0.161 0.839 36 H 0.206 0.794 37 H 0.119 0.881 38 H 0.060 0.940 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.156 0.844 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.067 0.933 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.430 7.086 12.973 16.120 hybrid contribution 1.882 0.011 -1.115 2.188 sum -4.547 7.098 11.857 14.548 Atomic orbital electron populations 1.21795 0.98469 0.99707 1.00428 1.21965 0.92557 0.98519 1.03618 1.19484 0.95828 0.90038 0.78557 0.91585 1.21215 0.89831 1.39739 1.06871 0.91797 1.24878 0.99064 0.94362 0.95031 1.69840 1.35587 1.37204 1.09337 0.86431 0.84184 0.78531 0.77627 1.19917 1.20906 1.20071 1.44884 1.36620 1.19656 1.08780 1.21910 0.99863 0.99921 0.82647 1.21296 1.06246 0.97714 0.98182 1.19935 1.07571 1.00426 0.95358 1.18302 0.93933 0.90262 0.88977 1.67285 1.12409 1.06793 1.38741 1.24176 0.92311 0.90803 0.90294 1.68275 1.28957 1.32296 1.01766 1.19328 0.88787 0.88949 0.88366 1.58865 1.14973 1.35158 1.09305 1.23101 0.88610 1.03064 0.96172 1.22163 0.98090 0.93835 0.92949 1.60750 1.05050 1.05530 1.60253 1.22207 0.91790 1.02473 0.90953 1.22727 0.98934 0.90313 0.97976 0.94142 0.94695 0.93372 0.87065 0.93970 0.92156 0.81165 0.83870 0.79375 0.88103 0.93961 0.89653 0.89628 0.84395 0.89878 0.89970 0.93292 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.80 37.16 0.36 -2.57 16 2 C -0.13 -2.85 5.22 -26.73 -0.14 -2.99 16 3 C 0.26 6.24 2.30 -69.08 -0.16 6.08 16 4 H 0.07 1.81 8.05 -51.93 -0.42 1.39 16 5 C -0.54 -13.86 8.48 -34.44 -0.29 -14.15 16 6 H 0.06 1.65 7.72 -52.48 -0.41 1.25 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -23.43 11.30 55.43 0.63 -22.80 16 9 Si 0.91 20.13 29.54 -169.99 -5.02 15.11 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.42 -9.06 2.08 -110.39 -0.23 -9.29 16 14 C 0.09 1.58 10.17 -16.58 -0.17 1.42 16 15 C -0.21 -3.49 9.74 -37.79 -0.37 -3.85 16 16 C -0.22 -4.16 5.89 -105.00 -0.62 -4.77 16 17 C 0.33 7.02 7.89 -155.85 -1.23 5.79 16 18 N -0.53 -11.27 10.47 -13.89 -0.15 -11.41 16 19 C 0.32 5.62 12.23 -92.12 -1.13 4.49 16 20 N -0.59 -10.18 8.90 -13.67 -0.12 -10.30 16 21 C 0.39 6.73 6.43 -154.72 -0.99 5.73 16 22 N -0.47 -6.44 4.74 -172.71 -0.82 -7.25 16 23 C 0.02 0.22 5.36 -3.76 -0.02 0.20 16 24 C 0.06 0.55 6.72 -3.76 -0.03 0.52 16 25 N -0.69 -6.23 6.91 -113.63 -0.79 -7.01 16 26 C 0.06 0.51 6.72 -3.77 -0.03 0.49 16 27 C 0.03 0.34 4.80 -3.77 -0.02 0.32 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.03 0.70 7.75 -51.93 -0.40 0.30 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.11 2.73 5.95 -51.93 -0.31 2.43 16 32 H 0.04 0.89 7.70 -51.93 -0.40 0.49 16 33 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.17 2.77 8.01 -52.49 -0.42 2.35 16 35 H 0.14 1.93 7.00 -52.49 -0.37 1.57 16 36 H 0.19 2.62 8.06 -52.49 -0.42 2.20 16 37 H 0.10 1.23 5.16 -51.93 -0.27 0.96 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.34 2.77 8.89 -39.29 -0.35 2.42 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.61 8.07 -51.93 -0.42 0.19 16 45 H 0.09 1.15 7.85 -51.93 -0.41 0.74 16 LS Contribution 357.81 15.07 5.39 5.39 Total: -1.00 -28.74 357.81 -12.70 -41.44 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -6.68 Total: 7.70 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -4.92 Total: -1.57 kcal Atomic # 7 Polarization: -66.60 SS G_CDS: -1.47 Total: -68.08 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.74 -12.70 -41.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.138 kcal (2) G-P(sol) polarization free energy of solvation -28.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds