Wall clock time and date at job start Tue Mar 31 2020 11:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00051 * 2 1 4 4 H 1.48502 * 109.46956 * 273.46519 * 3 2 1 5 5 H 1.48500 * 109.47096 * 33.46366 * 3 2 1 6 6 H 1.48493 * 109.47185 * 153.46555 * 3 2 1 7 7 C 1.37878 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99773 * 347.66608 * 7 2 1 9 9 C 1.50697 * 120.00200 * 167.67818 * 7 2 1 10 10 N 1.46900 * 110.02106 * 84.23900 * 9 7 2 11 11 C 1.46907 * 110.99757 * 65.52128 * 10 9 7 12 12 H 1.09003 * 109.54046 * 28.66664 * 11 10 9 13 13 C 1.53175 * 109.54128 * 268.49328 * 11 10 9 14 14 C 1.53092 * 109.15800 * 183.06311 * 13 11 10 15 15 O 1.42906 * 109.41645 * 57.60747 * 14 13 11 16 16 C 1.42899 * 114.09478 * 298.84005 * 15 14 13 17 17 H 1.08994 * 109.48232 * 301.17173 * 16 15 14 18 18 C 1.50707 * 109.47790 * 181.15440 * 16 15 14 19 19 C 1.38234 * 119.99794 * 324.74561 * 18 16 15 20 20 C 1.38234 * 120.00053 * 179.81028 * 19 18 16 21 21 C 1.38238 * 119.99919 * 0.40321 * 20 19 18 22 22 C 1.38238 * 119.99850 * 359.84954 * 21 20 19 23 23 C 1.38230 * 119.99923 * 145.02624 * 18 16 15 24 24 C 1.53086 * 109.42582 * 61.16855 * 16 15 14 25 25 C 1.54263 * 110.03439 * 205.63743 * 9 7 2 26 26 C 1.54956 * 104.16271 * 95.74946 * 25 9 7 27 27 C 1.54886 * 102.78007 * 37.89267 * 26 25 9 28 28 C 1.53879 * 110.02979 * 322.85015 * 9 7 2 29 29 H 0.97001 * 119.99956 * 359.97438 * 1 2 3 30 30 H 1.00897 * 110.99749 * 301.56996 * 10 9 7 31 31 H 1.08998 * 109.52601 * 63.16047 * 13 11 10 32 32 H 1.09001 * 109.57636 * 302.99447 * 13 11 10 33 33 H 1.09002 * 109.48359 * 297.62152 * 14 13 11 34 34 H 1.09009 * 109.48846 * 177.59220 * 14 13 11 35 35 H 1.08002 * 120.00441 * 0.02562 * 19 18 16 36 36 H 1.08002 * 120.00120 * 180.23192 * 20 19 18 37 37 H 1.08002 * 120.00060 * 179.83160 * 21 20 19 38 38 H 1.07994 * 120.00036 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.00202 * 359.97137 * 23 18 16 40 40 H 1.08996 * 109.52840 * 62.28274 * 24 16 15 41 41 H 1.08997 * 109.52296 * 182.48184 * 24 16 15 42 42 H 1.08999 * 110.48887 * 214.40252 * 25 9 7 43 43 H 1.09007 * 110.48292 * 337.03641 * 25 9 7 44 44 H 1.08998 * 110.72336 * 279.57533 * 26 25 9 45 45 H 1.09011 * 110.92529 * 156.29707 * 26 25 9 46 46 H 1.09007 * 110.48750 * 203.40721 * 27 26 25 47 47 H 1.08995 * 110.60329 * 80.81251 * 27 26 25 48 48 H 1.09001 * 110.03095 * 359.95376 * 28 9 7 49 49 H 1.09003 * 110.03311 * 121.38500 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4233 2.0887 -1.3975 5 1 1.4851 2.6304 0.7720 6 1 3.5813 1.4201 0.6254 7 6 2.0045 -1.1941 -0.0005 8 1 1.4832 -2.1186 0.1988 9 6 3.4854 -1.2090 -0.2790 10 7 4.2321 -0.9304 0.9550 11 6 4.0460 -2.0067 1.9373 12 1 3.8571 -2.9460 1.4175 13 6 2.8562 -1.6739 2.8428 14 6 2.7174 -2.7624 3.9103 15 8 3.9342 -2.8566 4.6538 16 6 5.0728 -3.2118 3.8667 17 1 4.8963 -4.1738 3.3857 18 6 6.2868 -3.3091 4.7544 19 6 6.4293 -2.4490 5.8271 20 6 7.5409 -2.5407 6.6437 21 6 8.5141 -3.4871 6.3825 22 6 8.3742 -4.3437 5.3066 23 6 7.2606 -4.2545 4.4923 24 6 5.3066 -2.1415 2.7975 25 6 3.9019 -2.5801 -0.8505 26 6 3.8913 -2.3699 -2.3857 27 6 4.4456 -0.9317 -2.5385 28 6 3.8306 -0.1613 -1.3519 29 1 -0.4850 0.8401 0.0004 30 1 3.9686 -0.0371 1.3431 31 1 1.9451 -1.6308 2.2460 32 1 3.0222 -0.7103 3.3245 33 1 2.5101 -3.7186 3.4299 34 1 1.8986 -2.5089 4.5839 35 1 5.6704 -1.7076 6.0295 36 1 7.6504 -1.8712 7.4841 37 1 9.3840 -3.5570 7.0189 38 1 9.1347 -5.0827 5.1023 39 1 7.1513 -4.9237 3.6518 40 1 5.5231 -1.1875 3.2782 41 1 6.1477 -2.4327 2.1684 42 1 4.9017 -2.8479 -0.5091 43 1 3.1820 -3.3471 -0.5646 44 1 2.8762 -2.4363 -2.7772 45 1 4.5428 -3.0897 -2.8817 46 1 4.1225 -0.4968 -3.4844 47 1 5.5335 -0.9308 -2.4711 48 1 2.9268 0.3574 -1.6716 49 1 4.5521 0.5539 -0.9569 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256805901.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:14 Heat of formation + Delta-G solvation = -18.530789 kcal Electronic energy + Delta-G solvation = -27631.385604 eV Core-core repulsion = 24136.806902 eV Total energy + Delta-G solvation = -3494.578702 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.88744 -38.67626 -37.71286 -34.33379 -32.69612 -32.38382 -30.88816 -30.30802 -29.06231 -28.12572 -26.78996 -23.99036 -23.85354 -22.89161 -22.39540 -21.00812 -20.45797 -19.39512 -18.65623 -17.04485 -16.43749 -15.96033 -15.65555 -15.14304 -15.07160 -14.92975 -14.56890 -14.20294 -13.91527 -13.58884 -13.36811 -13.33291 -13.12691 -12.95355 -12.58977 -12.34292 -12.26047 -11.94254 -11.33315 -11.15900 -11.07204 -10.98264 -10.88293 -10.71097 -10.55556 -10.49596 -10.20851 -10.16234 -9.92761 -9.70759 -9.61331 -9.42109 -9.32011 -9.04100 -8.90432 -8.69882 -8.53646 -7.23112 -6.21759 -4.18101 1.33487 1.42319 3.18840 3.28690 3.33750 3.74115 4.05416 4.27342 4.78808 4.91814 4.95023 5.04008 5.14421 5.26750 5.33958 5.39791 5.49863 5.53664 5.54627 5.60911 5.63305 5.68490 5.76410 5.83867 5.93486 6.01132 6.07312 6.13431 6.23170 6.30399 6.36403 6.41199 6.44808 6.45704 6.50691 6.52308 6.56731 6.64743 6.66280 6.69791 6.80217 6.89303 6.98732 7.00648 7.05168 7.12374 7.22374 7.57851 7.63391 8.14200 8.46776 8.54673 8.82515 9.42790 10.89757 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.017263 B = 0.004008 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.587781 B = 6983.551820 C = 7602.683199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.075 3.925 3 Si 0.880 3.120 4 H -0.283 1.283 5 H -0.303 1.303 6 H -0.252 1.252 7 C -0.531 4.531 8 H 0.073 0.927 9 C 0.204 3.796 10 N -0.687 5.687 11 C 0.104 3.896 12 H 0.072 0.928 13 C -0.185 4.185 14 C 0.066 3.934 15 O -0.383 6.383 16 C 0.132 3.868 17 H 0.062 0.938 18 C -0.070 4.070 19 C -0.093 4.093 20 C -0.125 4.125 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.112 4.112 24 C -0.130 4.130 25 C -0.097 4.097 26 C -0.116 4.116 27 C -0.113 4.113 28 C -0.134 4.134 29 H 0.264 0.736 30 H 0.332 0.668 31 H 0.111 0.889 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.048 0.952 46 H 0.050 0.950 47 H 0.054 0.946 48 H 0.069 0.931 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.852 -6.143 7.443 16.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.128 4.128 3 Si 0.711 3.289 4 H -0.211 1.211 5 H -0.231 1.231 6 H -0.177 1.177 7 C -0.570 4.570 8 H 0.091 0.909 9 C 0.115 3.885 10 N -0.320 5.320 11 C -0.007 4.007 12 H 0.091 0.909 13 C -0.224 4.224 14 C -0.011 4.011 15 O -0.303 6.303 16 C 0.074 3.926 17 H 0.080 0.920 18 C -0.070 4.070 19 C -0.111 4.111 20 C -0.143 4.143 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.131 4.131 24 C -0.169 4.169 25 C -0.135 4.135 26 C -0.154 4.154 27 C -0.150 4.150 28 C -0.172 4.172 29 H 0.073 0.927 30 H 0.153 0.847 31 H 0.130 0.870 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.145 0.855 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.087 0.913 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.289 -6.235 7.373 16.427 hybrid contribution -0.705 1.225 -0.014 1.413 sum 12.585 -5.010 7.359 15.415 Atomic orbital electron populations 1.69958 1.06405 1.27066 1.49067 1.25065 0.94551 0.99068 0.94131 0.87257 0.80364 0.83699 0.77564 1.21059 1.23129 1.17720 1.21470 0.91598 0.94794 1.49182 0.90932 1.19482 0.91714 0.90988 0.86295 1.61388 1.60382 1.04265 1.05926 1.21224 0.91197 0.96643 0.91633 0.90947 1.23097 1.03384 0.98035 0.97867 1.22612 0.85653 0.98346 0.94486 1.87844 1.16296 1.90733 1.35383 1.20847 0.84103 0.97574 0.90120 0.92005 1.19719 0.95212 0.95853 0.96246 1.21051 0.97260 0.98614 0.94155 1.21165 0.94516 0.98859 0.99762 1.21120 0.99075 0.96268 0.97940 1.21052 0.97856 0.99598 0.95648 1.20958 0.94222 0.98149 0.99726 1.22248 0.99632 0.98586 0.96385 1.22307 0.99089 0.97880 0.94253 1.22355 1.00370 0.95662 0.96981 1.22197 0.98994 0.96170 0.97684 1.22635 0.99604 0.98717 0.96217 0.92652 0.84713 0.87045 0.92491 0.93556 0.89420 0.85486 0.86261 0.86422 0.86194 0.86036 0.91606 0.91119 0.93021 0.92696 0.91535 0.93296 0.93114 0.92681 0.91289 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.41 13.96 55.43 0.77 -24.64 16 2 C 0.08 1.99 5.15 -17.82 -0.09 1.90 16 3 Si 0.88 20.71 23.03 -169.99 -3.91 16.80 16 4 H -0.28 -6.69 6.67 56.52 0.38 -6.32 16 5 H -0.30 -7.37 7.11 56.52 0.40 -6.96 16 6 H -0.25 -5.55 4.55 56.52 0.26 -5.29 16 7 C -0.53 -13.31 5.96 -34.44 -0.21 -13.52 16 8 H 0.07 2.02 7.64 -52.49 -0.40 1.61 16 9 C 0.20 4.37 0.50 -131.64 -0.07 4.30 16 10 N -0.69 -13.89 5.76 -92.87 -0.54 -14.43 16 11 C 0.10 1.88 2.05 -67.51 -0.14 1.74 16 12 H 0.07 1.36 6.09 -51.93 -0.32 1.04 16 13 C -0.19 -3.44 5.13 -26.59 -0.14 -3.57 16 14 C 0.07 1.06 6.84 37.21 0.25 1.31 16 15 O -0.38 -6.17 9.56 -35.23 -0.34 -6.51 16 16 C 0.13 1.94 2.85 -27.84 -0.08 1.86 16 17 H 0.06 0.88 8.05 -51.93 -0.42 0.46 16 18 C -0.07 -0.96 5.00 -104.62 -0.52 -1.48 16 19 C -0.09 -1.23 9.35 -39.58 -0.37 -1.60 16 20 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 21 C -0.13 -1.31 10.05 -39.58 -0.40 -1.71 16 22 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 23 C -0.11 -1.34 9.68 -39.58 -0.38 -1.73 16 24 C -0.13 -2.07 5.02 -26.58 -0.13 -2.20 16 25 C -0.10 -1.87 4.40 -25.04 -0.11 -1.98 16 26 C -0.12 -2.07 6.91 -24.70 -0.17 -2.24 16 27 C -0.11 -2.03 6.83 -25.07 -0.17 -2.21 16 28 C -0.13 -2.84 3.94 -25.61 -0.10 -2.94 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.33 7.13 5.10 -39.29 -0.20 6.93 16 31 H 0.11 2.44 5.74 -51.93 -0.30 2.14 16 32 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 1.31 8.14 -51.92 -0.42 0.89 16 35 H 0.13 1.72 7.64 -52.49 -0.40 1.32 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.94 7.81 -51.93 -0.41 0.54 16 43 H 0.05 1.09 7.43 -51.93 -0.39 0.70 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 45 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.07 1.61 4.08 -51.93 -0.21 1.40 16 49 H 0.05 1.12 6.72 -51.93 -0.35 0.77 16 LS Contribution 360.45 15.07 5.43 5.43 Total: -1.00 -27.46 360.45 -10.38 -37.85 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -8.18 Total: 13.05 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: -3.62 Total: -27.56 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.24 Total: -39.07 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.34 Total: -6.51 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -3.91 Total: 16.80 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.46 -10.38 -37.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256805901.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.314 kcal (2) G-P(sol) polarization free energy of solvation -27.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds