Wall clock time and date at job start Tue Mar 31 2020 11:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00051 * 2 1 4 4 H 1.48502 * 109.46956 * 273.46519 * 3 2 1 5 5 H 1.48500 * 109.47096 * 33.46366 * 3 2 1 6 6 H 1.48493 * 109.47185 * 153.46555 * 3 2 1 7 7 C 1.37878 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99773 * 347.66608 * 7 2 1 9 9 C 1.50697 * 120.00200 * 167.67818 * 7 2 1 10 10 N 1.46900 * 110.02106 * 84.23900 * 9 7 2 11 11 C 1.46907 * 110.99757 * 65.52128 * 10 9 7 12 12 H 1.09003 * 109.54046 * 28.66664 * 11 10 9 13 13 C 1.53175 * 109.54128 * 268.49328 * 11 10 9 14 14 C 1.53092 * 109.15800 * 183.06311 * 13 11 10 15 15 O 1.42906 * 109.41645 * 57.60747 * 14 13 11 16 16 C 1.42899 * 114.09478 * 298.84005 * 15 14 13 17 17 H 1.08994 * 109.48232 * 301.17173 * 16 15 14 18 18 C 1.50707 * 109.47790 * 181.15440 * 16 15 14 19 19 C 1.38234 * 119.99794 * 324.74561 * 18 16 15 20 20 C 1.38234 * 120.00053 * 179.81028 * 19 18 16 21 21 C 1.38238 * 119.99919 * 0.40321 * 20 19 18 22 22 C 1.38238 * 119.99850 * 359.84954 * 21 20 19 23 23 C 1.38230 * 119.99923 * 145.02624 * 18 16 15 24 24 C 1.53086 * 109.42582 * 61.16855 * 16 15 14 25 25 C 1.54263 * 110.03439 * 205.63743 * 9 7 2 26 26 C 1.54956 * 104.16271 * 95.74946 * 25 9 7 27 27 C 1.54886 * 102.78007 * 37.89267 * 26 25 9 28 28 C 1.53879 * 110.02979 * 322.85015 * 9 7 2 29 29 H 0.97001 * 119.99956 * 359.97438 * 1 2 3 30 30 H 1.00897 * 110.99749 * 301.56996 * 10 9 7 31 31 H 1.08998 * 109.52601 * 63.16047 * 13 11 10 32 32 H 1.09001 * 109.57636 * 302.99447 * 13 11 10 33 33 H 1.09002 * 109.48359 * 297.62152 * 14 13 11 34 34 H 1.09009 * 109.48846 * 177.59220 * 14 13 11 35 35 H 1.08002 * 120.00441 * 0.02562 * 19 18 16 36 36 H 1.08002 * 120.00120 * 180.23192 * 20 19 18 37 37 H 1.08002 * 120.00060 * 179.83160 * 21 20 19 38 38 H 1.07994 * 120.00036 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.00202 * 359.97137 * 23 18 16 40 40 H 1.08996 * 109.52840 * 62.28274 * 24 16 15 41 41 H 1.08997 * 109.52296 * 182.48184 * 24 16 15 42 42 H 1.08999 * 110.48887 * 214.40252 * 25 9 7 43 43 H 1.09007 * 110.48292 * 337.03641 * 25 9 7 44 44 H 1.08998 * 110.72336 * 279.57533 * 26 25 9 45 45 H 1.09011 * 110.92529 * 156.29707 * 26 25 9 46 46 H 1.09007 * 110.48750 * 203.40721 * 27 26 25 47 47 H 1.08995 * 110.60329 * 80.81251 * 27 26 25 48 48 H 1.09001 * 110.03095 * 359.95376 * 28 9 7 49 49 H 1.09003 * 110.03311 * 121.38500 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4233 2.0887 -1.3975 5 1 1.4851 2.6304 0.7720 6 1 3.5813 1.4201 0.6254 7 6 2.0045 -1.1941 -0.0005 8 1 1.4832 -2.1186 0.1988 9 6 3.4854 -1.2090 -0.2790 10 7 4.2321 -0.9304 0.9550 11 6 4.0460 -2.0067 1.9373 12 1 3.8571 -2.9460 1.4175 13 6 2.8562 -1.6739 2.8428 14 6 2.7174 -2.7624 3.9103 15 8 3.9342 -2.8566 4.6538 16 6 5.0728 -3.2118 3.8667 17 1 4.8963 -4.1738 3.3857 18 6 6.2868 -3.3091 4.7544 19 6 6.4293 -2.4490 5.8271 20 6 7.5409 -2.5407 6.6437 21 6 8.5141 -3.4871 6.3825 22 6 8.3742 -4.3437 5.3066 23 6 7.2606 -4.2545 4.4923 24 6 5.3066 -2.1415 2.7975 25 6 3.9019 -2.5801 -0.8505 26 6 3.8913 -2.3699 -2.3857 27 6 4.4456 -0.9317 -2.5385 28 6 3.8306 -0.1613 -1.3519 29 1 -0.4850 0.8401 0.0004 30 1 3.9686 -0.0371 1.3431 31 1 1.9451 -1.6308 2.2460 32 1 3.0222 -0.7103 3.3245 33 1 2.5101 -3.7186 3.4299 34 1 1.8986 -2.5089 4.5839 35 1 5.6704 -1.7076 6.0295 36 1 7.6504 -1.8712 7.4841 37 1 9.3840 -3.5570 7.0189 38 1 9.1347 -5.0827 5.1023 39 1 7.1513 -4.9237 3.6518 40 1 5.5231 -1.1875 3.2782 41 1 6.1477 -2.4327 2.1684 42 1 4.9017 -2.8479 -0.5091 43 1 3.1820 -3.3471 -0.5646 44 1 2.8762 -2.4363 -2.7772 45 1 4.5428 -3.0897 -2.8817 46 1 4.1225 -0.4968 -3.4844 47 1 5.5335 -0.9308 -2.4711 48 1 2.9268 0.3574 -1.6716 49 1 4.5521 0.5539 -0.9569 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256805901.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:13 Heat of formation + Delta-G solvation = -33.941593 kcal Electronic energy + Delta-G solvation = -27632.053867 eV Core-core repulsion = 24136.806902 eV Total energy + Delta-G solvation = -3495.246965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.11324 -39.97044 -39.03751 -35.81208 -34.46854 -33.69463 -31.92737 -31.69662 -30.24874 -29.70047 -28.48077 -25.74682 -25.04957 -24.27324 -23.36018 -22.19141 -21.82497 -20.90394 -20.34001 -18.39468 -17.92741 -17.18949 -16.93201 -16.81365 -16.63085 -16.15016 -15.92882 -15.30431 -15.19820 -15.00385 -14.91485 -14.68533 -14.53090 -14.17173 -14.09395 -13.68599 -13.53289 -13.36422 -12.82936 -12.72105 -12.42329 -12.36697 -12.29135 -12.18437 -12.04121 -11.88114 -11.73012 -11.61017 -11.51037 -11.24552 -11.15074 -11.08420 -10.90773 -10.73948 -10.49305 -9.76674 -9.56860 -8.96069 -8.30748 -6.27390 0.44817 0.55717 1.27604 1.33725 1.41256 2.28238 2.72678 2.95530 3.03221 3.55658 3.85938 3.93143 3.98370 4.03613 4.05848 4.16126 4.20468 4.23857 4.24975 4.34163 4.37006 4.42837 4.57897 4.67000 4.71604 4.75482 4.77841 4.82189 4.85636 4.93284 5.00580 5.01053 5.03192 5.11560 5.15803 5.21726 5.23078 5.27884 5.33069 5.41770 5.43294 5.58254 5.61278 5.61766 5.66662 5.70947 5.73865 6.15268 6.20967 6.31114 6.66539 6.67717 6.83065 7.35951 8.84452 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.017263 B = 0.004008 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.587781 B = 6983.551820 C = 7602.683199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.027 3.973 3 Si 0.932 3.068 4 H -0.281 1.281 5 H -0.316 1.316 6 H -0.228 1.228 7 C -0.511 4.511 8 H 0.032 0.968 9 C 0.200 3.800 10 N -0.680 5.680 11 C 0.104 3.896 12 H 0.067 0.933 13 C -0.178 4.178 14 C 0.073 3.927 15 O -0.388 6.388 16 C 0.133 3.867 17 H 0.069 0.931 18 C -0.090 4.090 19 C -0.113 4.113 20 C -0.130 4.130 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.120 4.120 24 C -0.116 4.116 25 C -0.094 4.094 26 C -0.113 4.113 27 C -0.107 4.107 28 C -0.141 4.141 29 H 0.261 0.739 30 H 0.323 0.677 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.138 0.862 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.135 0.865 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.040 0.960 44 H 0.047 0.953 45 H 0.083 0.917 46 H 0.062 0.938 47 H 0.079 0.921 48 H 0.043 0.957 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.759 -7.086 7.742 19.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.171 4.171 3 Si 0.762 3.238 4 H -0.208 1.208 5 H -0.245 1.245 6 H -0.152 1.152 7 C -0.551 4.551 8 H 0.051 0.949 9 C 0.111 3.889 10 N -0.311 5.311 11 C -0.006 4.006 12 H 0.086 0.914 13 C -0.217 4.217 14 C -0.005 4.005 15 O -0.308 6.308 16 C 0.075 3.925 17 H 0.087 0.913 18 C -0.091 4.091 19 C -0.131 4.131 20 C -0.148 4.148 21 C -0.142 4.142 22 C -0.141 4.141 23 C -0.138 4.138 24 C -0.154 4.154 25 C -0.132 4.132 26 C -0.150 4.150 27 C -0.145 4.145 28 C -0.178 4.178 29 H 0.070 0.930 30 H 0.143 0.857 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.115 0.885 35 H 0.132 0.868 36 H 0.155 0.845 37 H 0.164 0.836 38 H 0.166 0.834 39 H 0.153 0.847 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.102 0.898 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.061 0.939 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.231 -7.199 7.675 20.190 hybrid contribution -1.908 1.409 -0.046 2.373 sum 15.323 -5.789 7.629 18.070 Atomic orbital electron populations 1.70095 1.08173 1.27529 1.52087 1.25702 0.94937 1.02171 0.94337 0.86408 0.80134 0.79779 0.77495 1.20766 1.24521 1.15181 1.21632 0.93632 0.92844 1.46998 0.94947 1.19523 0.89251 0.92923 0.87253 1.61442 1.59332 1.04335 1.05957 1.21289 0.92264 0.95649 0.91406 0.91444 1.22922 1.01846 0.98737 0.98233 1.22514 0.86343 0.97592 0.94002 1.87857 1.16524 1.90748 1.35649 1.20905 0.84261 0.97209 0.90111 0.91277 1.19688 0.95280 0.97330 0.96758 1.21085 0.98069 0.98878 0.95080 1.21425 0.94030 0.99475 0.99905 1.21515 0.99464 0.95238 0.97976 1.21431 0.97808 0.99856 0.95031 1.21189 0.94231 0.97872 1.00495 1.22096 0.98288 0.98747 0.96299 1.22251 0.99469 0.95928 0.95514 1.22349 1.00199 0.96753 0.95743 1.22207 1.00258 0.95354 0.96670 1.22626 0.98876 0.98892 0.97445 0.93028 0.85705 0.90863 0.93354 0.92908 0.88484 0.86847 0.84453 0.83559 0.83415 0.84691 0.92522 0.90135 0.91219 0.94163 0.93444 0.89831 0.91907 0.90200 0.93857 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.54 13.96 21.45 0.30 -56.24 16 2 C 0.03 1.49 5.15 84.66 0.44 1.92 16 3 Si 0.93 43.77 23.03 68.60 1.58 45.35 16 4 H -0.28 -12.99 6.67 99.48 0.66 -12.33 16 5 H -0.32 -15.40 7.11 99.48 0.71 -14.69 16 6 H -0.23 -9.68 4.55 99.48 0.45 -9.23 16 7 C -0.51 -26.62 5.96 25.60 0.15 -26.47 16 8 H 0.03 1.91 7.64 -2.91 -0.02 1.89 16 9 C 0.20 8.50 0.50 3.50 0.00 8.50 16 10 N -0.68 -26.98 5.76 -447.74 -2.58 -29.56 16 11 C 0.10 3.77 2.05 45.04 0.09 3.86 16 12 H 0.07 2.52 6.09 -2.39 -0.01 2.50 16 13 C -0.18 -6.84 5.13 30.68 0.16 -6.68 16 14 C 0.07 2.36 6.84 72.01 0.49 2.85 16 15 O -0.39 -12.39 9.56 -148.98 -1.42 -13.82 16 16 C 0.13 3.79 2.85 29.88 0.09 3.87 16 17 H 0.07 1.86 8.05 -2.39 -0.02 1.84 16 18 C -0.09 -2.33 5.00 -19.87 -0.10 -2.43 16 19 C -0.11 -2.87 9.35 22.27 0.21 -2.67 16 20 C -0.13 -2.65 10.05 22.27 0.22 -2.43 16 21 C -0.12 -2.14 10.05 22.27 0.22 -1.92 16 22 C -0.12 -2.17 10.05 22.27 0.22 -1.95 16 23 C -0.12 -2.55 9.68 22.27 0.22 -2.33 16 24 C -0.12 -3.56 5.02 30.69 0.15 -3.41 16 25 C -0.09 -3.49 4.40 31.69 0.14 -3.35 16 26 C -0.11 -3.76 6.91 31.91 0.22 -3.54 16 27 C -0.11 -3.55 6.83 31.67 0.22 -3.34 16 28 C -0.14 -5.75 3.94 31.32 0.12 -5.63 16 29 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 30 H 0.32 13.71 5.10 -89.70 -0.46 13.25 16 31 H 0.07 3.40 5.74 -2.39 -0.01 3.38 16 32 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 33 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.10 2.94 8.14 -2.38 -0.02 2.93 16 35 H 0.11 3.09 7.64 -2.91 -0.02 3.07 16 36 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 37 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 38 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 39 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.07 2.36 7.81 -2.39 -0.02 2.34 16 43 H 0.04 1.60 7.43 -2.38 -0.02 1.58 16 44 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 46 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 47 H 0.08 2.28 8.14 -2.39 -0.02 2.27 16 48 H 0.04 2.00 4.08 -2.39 -0.01 1.99 16 49 H 0.06 2.36 6.72 -2.39 -0.02 2.35 16 Total: -1.00 -61.90 360.45 1.31 -60.59 By element: Atomic # 1 Polarization: 38.62 SS G_CDS: 0.17 Total: 38.79 kcal Atomic # 6 Polarization: -48.38 SS G_CDS: 3.27 Total: -45.11 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -2.28 Total: -85.80 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -1.42 Total: -13.82 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.58 Total: 45.35 kcal Total: -61.90 1.31 -60.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256805901.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.648 kcal (2) G-P(sol) polarization free energy of solvation -61.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds