Wall clock time and date at job start Tue Mar 31 2020 12:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00108 * 2 1 4 4 H 1.48502 * 109.47429 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47327 * 300.00434 * 3 2 1 6 6 H 1.48502 * 109.46911 * 60.00059 * 3 2 1 7 7 C 1.37877 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99701 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47162 * 174.71073 * 9 7 2 11 11 C 1.46896 * 111.00172 * 281.25906 * 10 9 7 12 12 C 1.50705 * 109.47341 * 66.04431 * 11 10 9 13 13 C 1.38236 * 119.99772 * 269.72314 * 12 11 10 14 14 C 1.38237 * 119.99900 * 180.32467 * 13 12 11 15 15 C 1.38233 * 119.99615 * 359.92833 * 14 13 12 16 16 C 1.38236 * 120.00481 * 0.07167 * 15 14 13 17 17 C 1.38234 * 119.99713 * 90.00003 * 12 11 10 18 18 C 1.46892 * 111.00047 * 157.29999 * 10 9 7 19 19 C 1.52981 * 109.43538 * 53.68565 * 18 10 9 20 20 C 1.53157 * 109.41880 * 178.08647 * 19 18 10 21 21 C 1.52592 * 109.23467 * 57.69969 * 20 19 18 22 22 C 1.53553 * 113.66150 * 75.68483 * 21 20 19 23 23 O 1.44271 * 85.36576 * 91.93677 * 22 21 20 24 24 C 1.44280 * 93.41602 * 23.84724 * 23 22 21 25 25 C 1.52580 * 113.22427 * 304.01282 * 21 20 19 26 26 C 1.52973 * 109.43574 * 293.50510 * 18 10 9 27 27 H 0.97000 * 119.99770 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47133 * 54.71856 * 9 7 2 29 29 H 1.08996 * 109.46987 * 294.71301 * 9 7 2 30 30 H 1.09000 * 109.47214 * 306.04048 * 11 10 9 31 31 H 1.09003 * 109.47323 * 186.04076 * 11 10 9 32 32 H 1.08000 * 119.99744 * 0.28095 * 13 12 11 33 33 H 1.07991 * 119.99832 * 180.02562 * 14 13 12 34 34 H 1.08008 * 119.99537 * 180.02562 * 15 14 13 35 35 H 1.07999 * 119.99751 * 179.97438 * 16 15 14 36 36 H 1.07991 * 120.00506 * 359.72079 * 17 12 11 37 37 H 1.09001 * 109.43901 * 173.59444 * 18 10 9 38 38 H 1.08996 * 109.47672 * 298.12294 * 19 18 10 39 39 H 1.09007 * 109.47528 * 58.14951 * 19 18 10 40 40 H 1.09000 * 109.54608 * 297.76360 * 20 19 18 41 41 H 1.08997 * 109.54050 * 177.63421 * 20 19 18 42 42 H 1.09001 * 113.88470 * 206.04642 * 22 21 20 43 43 H 1.08992 * 113.88668 * 337.82889 * 22 21 20 44 44 H 1.09001 * 113.88328 * 222.04707 * 24 23 22 45 45 H 1.08994 * 114.01554 * 90.27505 * 24 23 22 46 46 H 1.09002 * 109.50638 * 296.02086 * 25 21 20 47 47 H 1.08999 * 109.54220 * 175.91700 * 25 21 20 48 48 H 1.09008 * 109.48251 * 301.84766 * 26 18 10 49 49 H 1.08999 * 109.48394 * 61.88239 * 26 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2005 -3.6128 -0.1288 11 6 2.6360 -3.7754 -1.5223 12 6 3.4380 -2.5704 -1.9419 13 6 2.8042 -1.4840 -2.5154 14 6 3.5407 -0.3814 -2.9064 15 6 4.9106 -0.3648 -2.7225 16 6 5.5444 -1.4512 -2.1490 17 6 4.8080 -2.5540 -1.7584 18 6 1.6231 -4.8594 0.3912 19 6 0.2762 -5.1181 -0.2865 20 6 -0.3030 -6.4421 0.2207 21 6 -0.4439 -6.3803 1.7389 22 6 -1.6334 -5.5331 2.2134 23 8 -2.3732 -6.7715 2.1929 24 6 -1.1884 -7.5819 2.3385 25 6 0.8646 -6.0524 2.4517 26 6 1.4232 -4.7360 1.9028 27 1 -0.4850 0.8401 -0.0004 28 1 0.5550 -2.5168 -0.8392 29 1 0.6977 -2.5992 0.9332 30 1 1.7625 -3.8730 -2.1669 31 1 3.2528 -4.6701 -1.6082 32 1 1.7339 -1.4969 -2.6586 33 1 3.0456 0.4675 -3.3541 34 1 5.4860 0.4969 -3.0277 35 1 6.6148 -1.4383 -2.0058 36 1 5.3031 -3.4027 -1.3104 37 1 2.2997 -5.6878 0.1813 38 1 -0.4112 -4.3057 -0.0509 39 1 0.4173 -5.1736 -1.3660 40 1 0.3650 -7.2598 -0.0497 41 1 -1.2819 -6.6078 -0.2291 42 1 -1.5053 -5.1119 3.2106 43 1 -1.9752 -4.8025 1.4804 44 1 -1.1792 -8.4682 1.7040 45 1 -0.9212 -7.7950 3.3734 46 1 1.5838 -6.8530 2.2789 47 1 0.6818 -5.9520 3.5216 48 1 2.3794 -4.5200 2.3795 49 1 0.7219 -3.9283 2.1121 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257905016.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:54 Heat of formation + Delta-G solvation = 12.241765 kcal Electronic energy + Delta-G solvation = -27835.818376 eV Core-core repulsion = 24342.574072 eV Total energy + Delta-G solvation = -3493.244304 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.03390 -38.92867 -37.60810 -34.68245 -32.53781 -31.09330 -30.71365 -30.06515 -28.90703 -27.26482 -26.50352 -25.08384 -23.50526 -22.69736 -22.22553 -21.69709 -20.33293 -19.27272 -18.18560 -16.48709 -16.18481 -15.99197 -15.87339 -15.52149 -15.00244 -14.66257 -14.54965 -14.21228 -13.86968 -13.52328 -13.37770 -13.04198 -12.74169 -12.60644 -12.49374 -12.20254 -12.04008 -11.96783 -11.80468 -11.63579 -11.47332 -11.13798 -10.90707 -10.75008 -10.60434 -10.45297 -10.33533 -10.18689 -10.07087 -9.91843 -9.78363 -9.60967 -9.44930 -9.19294 -8.43479 -8.02646 -7.74378 -7.23866 -6.00462 -3.92368 2.17789 2.29063 3.31750 3.40380 3.49251 3.77014 4.19705 4.44793 4.55437 4.70156 4.95781 5.13429 5.17703 5.32592 5.35653 5.38862 5.43120 5.51792 5.56964 5.59296 5.62081 5.69374 5.69716 5.76392 5.86013 5.91071 5.93500 6.01012 6.07756 6.12309 6.13876 6.20739 6.23015 6.26508 6.35196 6.43793 6.47306 6.48588 6.73065 6.77409 6.80450 6.88319 7.17185 7.25899 7.32410 7.35891 7.53685 7.84688 7.90163 8.13123 8.17245 8.56683 9.12260 9.65429 11.09312 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016599 B = 0.004364 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.475992 B = 6414.571724 C = 7431.028289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.059 3.941 3 Si 0.878 3.122 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.289 1.289 7 C -0.480 4.480 8 H 0.068 0.932 9 C 0.190 3.810 10 N -0.527 5.527 11 C 0.105 3.895 12 C -0.055 4.055 13 C -0.036 4.036 14 C -0.140 4.140 15 C -0.125 4.125 16 C -0.145 4.145 17 C -0.106 4.106 18 C 0.090 3.910 19 C -0.151 4.151 20 C -0.088 4.088 21 C -0.119 4.119 22 C 0.043 3.957 23 O -0.385 6.385 24 C 0.038 3.962 25 C -0.108 4.108 26 C -0.107 4.107 27 H 0.258 0.742 28 H -0.003 1.003 29 H 0.028 0.972 30 H 0.031 0.969 31 H 0.060 0.940 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.069 0.931 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.084 -11.765 -0.334 12.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.142 4.142 3 Si 0.706 3.294 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.215 1.215 7 C -0.518 4.518 8 H 0.087 0.913 9 C 0.065 3.935 10 N -0.250 5.250 11 C -0.023 4.023 12 C -0.056 4.056 13 C -0.054 4.054 14 C -0.159 4.159 15 C -0.144 4.144 16 C -0.163 4.163 17 C -0.125 4.125 18 C -0.019 4.019 19 C -0.191 4.191 20 C -0.126 4.126 21 C -0.119 4.119 22 C -0.033 4.033 23 O -0.304 6.304 24 C -0.039 4.039 25 C -0.146 4.146 26 C -0.145 4.145 27 H 0.068 0.932 28 H 0.015 0.985 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.134 0.866 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.111 0.889 44 H 0.104 0.896 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.088 0.912 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.077 -11.583 -0.069 11.985 hybrid contribution -0.228 1.101 -0.270 1.157 sum 2.849 -10.481 -0.339 10.867 Atomic orbital electron populations 1.69957 1.05921 1.26380 1.51724 1.24842 0.94559 0.98758 0.96023 0.86710 0.81028 0.84318 0.77331 1.19082 1.21128 1.21528 1.21334 0.93941 0.89441 1.47111 0.91344 1.19843 0.89842 0.87556 0.96284 1.62397 1.41741 1.03943 1.16888 1.20864 0.96672 0.94671 0.90097 1.19451 0.93160 0.95948 0.97020 1.20808 0.99047 0.92014 0.93564 1.20879 0.93947 0.98312 1.02719 1.20882 0.94846 0.97824 1.00807 1.20800 0.98774 0.94666 1.02071 1.20747 0.93724 0.98069 0.99970 1.21612 0.92809 0.92959 0.94492 1.22283 0.99415 0.97250 1.00106 1.21200 1.01013 0.98362 0.92014 1.23278 0.96099 0.95089 0.97421 1.24031 0.89338 0.88694 1.01242 1.89662 1.28360 1.17863 1.94517 1.23990 0.84281 0.95380 1.00228 1.21538 0.95569 0.98597 0.98886 1.21547 1.01682 0.96332 0.94955 0.93231 0.98500 0.95362 0.95142 0.92139 0.86624 0.87546 0.87727 0.87569 0.87335 0.91721 0.90843 0.92167 0.91796 0.91725 0.90200 0.88907 0.89643 0.90471 0.91832 0.91841 0.91240 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.43 13.29 55.43 0.74 -24.69 16 2 C 0.06 1.58 5.45 -17.82 -0.10 1.49 16 3 Si 0.88 21.56 29.28 -169.99 -4.98 16.58 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.48 -12.42 5.64 -34.44 -0.19 -12.61 16 8 H 0.07 1.86 6.48 -52.49 -0.34 1.52 16 9 C 0.19 4.43 3.06 -4.97 -0.02 4.41 16 10 N -0.53 -10.21 4.44 -229.55 -1.02 -11.23 16 11 C 0.10 1.88 4.66 -4.98 -0.02 1.86 16 12 C -0.06 -1.06 3.56 -104.62 -0.37 -1.44 16 13 C -0.04 -0.73 6.53 -39.58 -0.26 -0.99 16 14 C -0.14 -2.73 9.79 -39.58 -0.39 -3.12 16 15 C -0.13 -2.25 10.05 -39.58 -0.40 -2.65 16 16 C -0.14 -2.51 10.05 -39.58 -0.40 -2.90 16 17 C -0.11 -1.91 9.65 -39.58 -0.38 -2.29 16 18 C 0.09 1.44 2.13 -67.74 -0.14 1.29 16 19 C -0.15 -2.30 4.46 -26.66 -0.12 -2.42 16 20 C -0.09 -1.11 5.06 -26.86 -0.14 -1.24 16 21 C -0.12 -1.45 0.79 -154.37 -0.12 -1.57 16 22 C 0.04 0.59 8.00 37.39 0.30 0.89 16 23 O -0.39 -5.55 12.36 -35.23 -0.44 -5.98 16 24 C 0.04 0.43 8.35 37.38 0.31 0.74 16 25 C -0.11 -1.29 5.10 -26.86 -0.14 -1.42 16 26 C -0.11 -1.63 5.08 -26.66 -0.14 -1.77 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.00 -0.07 7.34 -51.93 -0.38 -0.45 16 29 H 0.03 0.71 5.78 -51.93 -0.30 0.41 16 30 H 0.03 0.55 6.77 -51.93 -0.35 0.20 16 31 H 0.06 0.95 7.87 -51.93 -0.41 0.54 16 32 H 0.12 2.53 7.95 -52.49 -0.42 2.11 16 33 H 0.11 1.97 8.06 -52.49 -0.42 1.55 16 34 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 35 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.06 0.95 7.92 -51.93 -0.41 0.54 16 38 H 0.07 1.31 6.25 -51.93 -0.32 0.98 16 39 H 0.06 0.92 6.84 -51.92 -0.36 0.57 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.84 8.07 -51.93 -0.42 0.42 16 42 H 0.08 1.02 8.05 -51.93 -0.42 0.60 16 43 H 0.09 1.36 7.52 -51.93 -0.39 0.97 16 44 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 45 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 48 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 49 H 0.07 1.26 6.20 -51.93 -0.32 0.94 16 LS Contribution 370.37 15.07 5.58 5.58 Total: -1.00 -28.38 370.37 -11.02 -39.39 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -8.19 Total: 4.09 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: -2.71 Total: -23.74 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.28 Total: -35.92 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.44 Total: -5.98 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.98 Total: 16.58 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.38 -11.02 -39.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257905016.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.633 kcal (2) G-P(sol) polarization free energy of solvation -28.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds