Wall clock time and date at job start Tue Mar 31 2020 12:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00108 * 2 1 4 4 H 1.48502 * 109.47429 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47327 * 300.00434 * 3 2 1 6 6 H 1.48502 * 109.46911 * 60.00059 * 3 2 1 7 7 C 1.37877 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99701 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47162 * 174.71073 * 9 7 2 11 11 C 1.46896 * 111.00172 * 281.25906 * 10 9 7 12 12 C 1.50705 * 109.47341 * 66.04431 * 11 10 9 13 13 C 1.38236 * 119.99772 * 269.72314 * 12 11 10 14 14 C 1.38237 * 119.99900 * 180.32467 * 13 12 11 15 15 C 1.38233 * 119.99615 * 359.92833 * 14 13 12 16 16 C 1.38236 * 120.00481 * 0.07167 * 15 14 13 17 17 C 1.38234 * 119.99713 * 90.00003 * 12 11 10 18 18 C 1.46892 * 111.00047 * 157.29999 * 10 9 7 19 19 C 1.52981 * 109.43538 * 53.68565 * 18 10 9 20 20 C 1.53157 * 109.41880 * 178.08647 * 19 18 10 21 21 C 1.52592 * 109.23467 * 57.69969 * 20 19 18 22 22 C 1.53553 * 113.66150 * 75.68483 * 21 20 19 23 23 O 1.44271 * 85.36576 * 91.93677 * 22 21 20 24 24 C 1.44280 * 93.41602 * 23.84724 * 23 22 21 25 25 C 1.52580 * 113.22427 * 304.01282 * 21 20 19 26 26 C 1.52973 * 109.43574 * 293.50510 * 18 10 9 27 27 H 0.97000 * 119.99770 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47133 * 54.71856 * 9 7 2 29 29 H 1.08996 * 109.46987 * 294.71301 * 9 7 2 30 30 H 1.09000 * 109.47214 * 306.04048 * 11 10 9 31 31 H 1.09003 * 109.47323 * 186.04076 * 11 10 9 32 32 H 1.08000 * 119.99744 * 0.28095 * 13 12 11 33 33 H 1.07991 * 119.99832 * 180.02562 * 14 13 12 34 34 H 1.08008 * 119.99537 * 180.02562 * 15 14 13 35 35 H 1.07999 * 119.99751 * 179.97438 * 16 15 14 36 36 H 1.07991 * 120.00506 * 359.72079 * 17 12 11 37 37 H 1.09001 * 109.43901 * 173.59444 * 18 10 9 38 38 H 1.08996 * 109.47672 * 298.12294 * 19 18 10 39 39 H 1.09007 * 109.47528 * 58.14951 * 19 18 10 40 40 H 1.09000 * 109.54608 * 297.76360 * 20 19 18 41 41 H 1.08997 * 109.54050 * 177.63421 * 20 19 18 42 42 H 1.09001 * 113.88470 * 206.04642 * 22 21 20 43 43 H 1.08992 * 113.88668 * 337.82889 * 22 21 20 44 44 H 1.09001 * 113.88328 * 222.04707 * 24 23 22 45 45 H 1.08994 * 114.01554 * 90.27505 * 24 23 22 46 46 H 1.09002 * 109.50638 * 296.02086 * 25 21 20 47 47 H 1.08999 * 109.54220 * 175.91700 * 25 21 20 48 48 H 1.09008 * 109.48251 * 301.84766 * 26 18 10 49 49 H 1.08999 * 109.48394 * 61.88239 * 26 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2005 -3.6128 -0.1288 11 6 2.6360 -3.7754 -1.5223 12 6 3.4380 -2.5704 -1.9419 13 6 2.8042 -1.4840 -2.5154 14 6 3.5407 -0.3814 -2.9064 15 6 4.9106 -0.3648 -2.7225 16 6 5.5444 -1.4512 -2.1490 17 6 4.8080 -2.5540 -1.7584 18 6 1.6231 -4.8594 0.3912 19 6 0.2762 -5.1181 -0.2865 20 6 -0.3030 -6.4421 0.2207 21 6 -0.4439 -6.3803 1.7389 22 6 -1.6334 -5.5331 2.2134 23 8 -2.3732 -6.7715 2.1929 24 6 -1.1884 -7.5819 2.3385 25 6 0.8646 -6.0524 2.4517 26 6 1.4232 -4.7360 1.9028 27 1 -0.4850 0.8401 -0.0004 28 1 0.5550 -2.5168 -0.8392 29 1 0.6977 -2.5992 0.9332 30 1 1.7625 -3.8730 -2.1669 31 1 3.2528 -4.6701 -1.6082 32 1 1.7339 -1.4969 -2.6586 33 1 3.0456 0.4675 -3.3541 34 1 5.4860 0.4969 -3.0277 35 1 6.6148 -1.4383 -2.0058 36 1 5.3031 -3.4027 -1.3104 37 1 2.2997 -5.6878 0.1813 38 1 -0.4112 -4.3057 -0.0509 39 1 0.4173 -5.1736 -1.3660 40 1 0.3650 -7.2598 -0.0497 41 1 -1.2819 -6.6078 -0.2291 42 1 -1.5053 -5.1119 3.2106 43 1 -1.9752 -4.8025 1.4804 44 1 -1.1792 -8.4682 1.7040 45 1 -0.9212 -7.7950 3.3734 46 1 1.5838 -6.8530 2.2789 47 1 0.6818 -5.9520 3.5216 48 1 2.3794 -4.5200 2.3795 49 1 0.7219 -3.9283 2.1121 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257905016.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:53 Heat of formation + Delta-G solvation = -3.223981 kcal Electronic energy + Delta-G solvation = -27836.489021 eV Core-core repulsion = 24342.574072 eV Total energy + Delta-G solvation = -3493.914949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.08925 -40.38132 -38.96252 -36.05502 -34.52064 -32.44686 -31.84871 -31.53988 -30.31650 -29.02929 -27.50692 -26.40077 -25.09968 -24.01519 -23.61217 -23.16009 -21.70774 -20.63466 -19.37017 -18.42161 -17.50142 -17.17510 -16.92744 -16.71858 -16.47509 -16.38871 -16.04305 -15.79136 -15.06439 -14.95255 -14.61286 -14.47643 -14.10062 -14.00774 -13.88926 -13.77731 -13.36785 -13.27819 -13.15258 -13.01234 -12.90575 -12.81328 -12.47377 -12.42888 -11.99969 -11.96888 -11.69391 -11.56649 -11.54072 -11.31034 -11.11261 -11.00316 -10.91570 -10.51767 -10.46897 -9.50380 -9.27601 -8.85492 -8.09691 -6.05978 0.71686 0.81828 1.34129 1.37837 1.49555 2.44044 2.78892 3.02149 3.22566 3.26370 3.59981 3.68084 3.94001 4.08266 4.17135 4.18995 4.22333 4.30278 4.34637 4.39536 4.45451 4.48167 4.52232 4.57639 4.59682 4.63742 4.71854 4.83120 4.88823 4.91079 4.97281 5.01024 5.02931 5.11560 5.18212 5.21630 5.26103 5.28072 5.33991 5.36690 5.42257 5.44174 5.52308 5.58409 5.79812 5.81190 5.86375 6.04260 6.24138 6.40198 6.48224 6.77566 7.03465 7.55115 9.00028 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016599 B = 0.004364 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.475992 B = 6414.571724 C = 7431.028289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.015 3.985 3 Si 0.924 3.076 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.290 1.290 7 C -0.467 4.467 8 H 0.059 0.941 9 C 0.215 3.785 10 N -0.532 5.532 11 C 0.106 3.894 12 C -0.069 4.069 13 C -0.059 4.059 14 C -0.154 4.154 15 C -0.132 4.132 16 C -0.140 4.140 17 C -0.109 4.109 18 C 0.089 3.911 19 C -0.143 4.143 20 C -0.080 4.080 21 C -0.115 4.115 22 C 0.035 3.965 23 O -0.410 6.410 24 C 0.046 3.954 25 C -0.097 4.097 26 C -0.104 4.104 27 H 0.256 0.744 28 H -0.036 1.036 29 H 0.005 0.995 30 H 0.020 0.980 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.131 0.869 35 H 0.141 0.859 36 H 0.134 0.866 37 H 0.093 0.907 38 H 0.034 0.966 39 H 0.055 0.945 40 H 0.091 0.909 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.105 0.895 45 H 0.099 0.901 46 H 0.090 0.910 47 H 0.076 0.924 48 H 0.065 0.935 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.982 -14.023 0.241 15.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.181 4.181 3 Si 0.751 3.249 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.217 1.217 7 C -0.506 4.506 8 H 0.078 0.922 9 C 0.089 3.911 10 N -0.255 5.255 11 C -0.022 4.022 12 C -0.070 4.070 13 C -0.077 4.077 14 C -0.172 4.172 15 C -0.150 4.150 16 C -0.158 4.158 17 C -0.127 4.127 18 C -0.019 4.019 19 C -0.182 4.182 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.041 4.041 23 O -0.329 6.329 24 C -0.030 4.030 25 C -0.135 4.135 26 C -0.142 4.142 27 H 0.065 0.935 28 H -0.018 1.018 29 H 0.023 0.977 30 H 0.038 0.962 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.124 0.876 34 H 0.149 0.851 35 H 0.159 0.841 36 H 0.152 0.848 37 H 0.111 0.889 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.077 0.923 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.123 0.877 45 H 0.117 0.883 46 H 0.108 0.892 47 H 0.094 0.906 48 H 0.083 0.917 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.994 -13.858 0.502 15.107 hybrid contribution -1.077 1.771 -0.503 2.133 sum 4.917 -12.086 -0.002 13.048 Atomic orbital electron populations 1.70063 1.07183 1.26698 1.53819 1.25406 0.95014 1.01332 0.96384 0.85982 0.80185 0.81579 0.77139 1.18575 1.20833 1.21721 1.21426 0.93321 0.90404 1.45426 0.92244 1.19356 0.89471 0.88616 0.93653 1.62322 1.40612 1.04490 1.18031 1.20928 0.96671 0.95647 0.88927 1.19648 0.94252 0.95902 0.97153 1.20676 0.97722 0.93614 0.95731 1.21028 0.95115 0.98010 1.03076 1.21232 0.94157 0.99187 1.00443 1.21247 1.00542 0.93732 1.00248 1.21075 0.93004 0.99226 0.99426 1.21772 0.93365 0.91975 0.94794 1.22139 0.98487 0.97724 0.99862 1.21149 1.01099 0.97239 0.92331 1.23230 0.95767 0.95460 0.97095 1.24029 0.90545 0.88536 1.01027 1.89642 1.30136 1.18411 1.94729 1.24202 0.82012 0.94985 1.01812 1.21483 0.95551 0.97117 0.99308 1.21485 1.00681 0.97384 0.94600 0.93504 1.01785 0.97657 0.96202 0.88850 0.89816 0.87622 0.85092 0.84099 0.84847 0.88852 0.94735 0.92611 0.89007 0.92317 0.89631 0.91420 0.87651 0.88296 0.89173 0.90559 0.91661 0.94548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.51 13.29 21.45 0.28 -55.23 16 2 C 0.02 0.86 5.45 84.65 0.46 1.32 16 3 Si 0.92 45.00 29.28 68.60 2.01 47.01 16 4 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 6 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 7 C -0.47 -24.93 5.64 25.60 0.14 -24.79 16 8 H 0.06 3.26 6.48 -2.91 -0.02 3.24 16 9 C 0.22 10.59 3.06 85.56 0.26 10.85 16 10 N -0.53 -20.69 4.44 -880.15 -3.90 -24.59 16 11 C 0.11 3.74 4.66 85.56 0.40 4.14 16 12 C -0.07 -2.63 3.56 -19.86 -0.07 -2.70 16 13 C -0.06 -2.47 6.53 22.27 0.15 -2.32 16 14 C -0.15 -6.01 9.79 22.27 0.22 -5.79 16 15 C -0.13 -4.46 10.05 22.27 0.22 -4.23 16 16 C -0.14 -4.37 10.05 22.27 0.22 -4.15 16 17 C -0.11 -3.61 9.65 22.27 0.21 -3.40 16 18 C 0.09 2.75 2.13 44.90 0.10 2.85 16 19 C -0.14 -4.42 4.46 30.64 0.14 -4.28 16 20 C -0.08 -1.90 5.06 30.51 0.15 -1.75 16 21 C -0.12 -2.61 0.79 -52.09 -0.04 -2.65 16 22 C 0.04 0.98 8.00 72.13 0.58 1.56 16 23 O -0.41 -11.46 12.36 -148.98 -1.84 -13.30 16 24 C 0.05 0.88 8.35 72.13 0.60 1.49 16 25 C -0.10 -2.04 5.10 30.51 0.16 -1.89 16 26 C -0.10 -3.08 5.08 30.64 0.16 -2.93 16 27 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 28 H -0.04 -1.97 7.34 -2.39 -0.02 -1.98 16 29 H 0.01 0.29 5.78 -2.39 -0.01 0.28 16 30 H 0.02 0.74 6.77 -2.39 -0.02 0.73 16 31 H 0.09 2.68 7.87 -2.39 -0.02 2.66 16 32 H 0.08 3.98 7.95 -2.91 -0.02 3.95 16 33 H 0.11 3.99 8.06 -2.92 -0.02 3.97 16 34 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 35 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 36 H 0.13 3.73 8.06 -2.92 -0.02 3.71 16 37 H 0.09 2.41 7.92 -2.39 -0.02 2.39 16 38 H 0.03 1.32 6.25 -2.39 -0.01 1.31 16 39 H 0.06 1.74 6.84 -2.38 -0.02 1.72 16 40 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.06 1.48 8.07 -2.39 -0.02 1.46 16 42 H 0.09 2.22 8.05 -2.39 -0.02 2.20 16 43 H 0.07 2.18 7.52 -2.39 -0.02 2.16 16 44 H 0.11 1.63 8.09 -2.39 -0.02 1.61 16 45 H 0.10 1.50 8.09 -2.39 -0.02 1.48 16 46 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.08 1.46 8.09 -2.39 -0.02 1.44 16 48 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 49 H 0.04 1.33 6.20 -2.39 -0.01 1.32 16 Total: -1.00 -64.51 370.37 1.51 -62.99 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.91 Total: 21.78 kcal Atomic # 6 Polarization: -42.72 SS G_CDS: 4.06 Total: -38.67 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -3.62 Total: -79.82 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -1.84 Total: -13.30 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.01 Total: 47.01 kcal Total: -64.51 1.51 -62.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257905016.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.766 kcal (2) G-P(sol) polarization free energy of solvation -64.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds