Wall clock time and date at job start Tue Mar 31 2020 11:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99752 * 2 1 4 4 H 1.48504 * 109.46850 * 269.99623 * 3 2 1 5 5 H 1.48493 * 109.47250 * 29.99721 * 3 2 1 6 6 H 1.48497 * 109.46969 * 150.00225 * 3 2 1 7 7 C 1.37874 * 120.00344 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00186 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00031 * 0.02562 * 7 2 1 10 10 O 1.42894 * 109.47117 * 179.97438 * 9 7 2 11 11 C 1.42905 * 113.99821 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46979 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47401 * 64.99789 * 12 11 10 14 14 C 1.49553 * 111.00113 * 76.30458 * 13 12 11 15 15 C 1.50444 * 85.02879 * 149.11373 * 14 13 12 16 16 H 1.08998 * 113.73155 * 76.18359 * 15 14 13 17 17 C 1.51833 * 124.08718 * 221.62488 * 15 14 13 18 18 C 1.53952 * 106.24046 * 153.46830 * 17 15 14 19 19 C 1.52368 * 112.55883 * 303.19425 * 18 17 15 20 20 C 1.54253 * 112.13209 * 53.52008 * 19 18 17 21 21 C 1.43575 * 111.00418 * 167.94775 * 13 12 11 22 22 C 1.50706 * 112.04088 * 323.57450 * 21 13 12 23 23 C 1.38243 * 119.99681 * 279.09860 * 22 21 13 24 24 C 1.38231 * 119.99609 * 179.78821 * 23 22 21 25 25 C 1.38241 * 120.00359 * 0.44494 * 24 23 22 26 26 C 1.38236 * 119.99461 * 359.81118 * 25 24 23 27 27 C 1.38231 * 120.00445 * 359.97335 * 26 25 24 28 28 H 0.96997 * 120.00612 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46672 * 59.99787 * 9 7 2 30 30 H 1.08992 * 109.46765 * 300.00256 * 9 7 2 31 31 H 1.08995 * 109.46534 * 299.99503 * 11 10 9 32 32 H 1.08995 * 109.47395 * 59.99917 * 11 10 9 33 33 H 1.08999 * 109.47136 * 184.99676 * 12 11 10 34 34 H 1.09001 * 109.47213 * 304.99247 * 12 11 10 35 35 H 1.09001 * 113.94482 * 263.13080 * 14 13 12 36 36 H 1.08994 * 113.94220 * 34.95019 * 14 13 12 37 37 H 1.09007 * 110.09221 * 272.64366 * 17 15 14 38 38 H 1.09001 * 110.09521 * 34.28542 * 17 15 14 39 39 H 1.09000 * 108.86354 * 182.40236 * 18 17 15 40 40 H 1.08994 * 108.78515 * 63.93264 * 18 17 15 41 41 H 1.09005 * 108.95180 * 292.83492 * 19 18 17 42 42 H 1.08998 * 108.87808 * 174.15630 * 19 18 17 43 43 H 1.09001 * 110.19006 * 184.19681 * 20 19 18 44 44 H 1.09006 * 110.29322 * 62.37281 * 20 19 18 45 45 H 1.07994 * 119.99994 * 0.02562 * 23 22 21 46 46 H 1.08003 * 119.99937 * 180.27763 * 24 23 22 47 47 H 1.07992 * 120.00039 * 179.83702 * 25 24 23 48 48 H 1.08003 * 119.99614 * 180.02562 * 26 25 24 49 49 H 1.08002 * 120.00111 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6482 -5.9561 0.0006 13 7 3.4074 -5.8878 1.2564 14 6 2.6278 -6.4801 2.3869 15 6 3.9732 -6.8581 2.9442 16 1 4.5137 -6.0231 3.3900 17 6 4.2792 -8.1947 3.5961 18 6 5.7875 -8.4337 3.4010 19 6 6.1996 -8.4002 1.9345 20 6 5.7404 -7.1064 1.2311 21 6 4.2388 -7.0471 1.4188 22 6 3.5759 -8.2960 0.8971 23 6 2.6439 -8.9595 1.6731 24 6 2.0327 -10.1025 1.1928 25 6 2.3602 -10.5873 -0.0597 26 6 3.2962 -9.9267 -0.8334 27 6 3.9041 -8.7812 -0.3550 28 1 -0.4851 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8902 31 1 0.9449 -4.9827 0.8897 32 1 0.9454 -4.9823 -0.8902 33 1 2.1824 -6.9374 -0.0893 34 1 3.3223 -5.7955 -0.8407 35 1 2.0911 -5.7453 2.9870 36 1 2.0103 -7.3312 2.1003 37 1 4.0407 -8.1562 4.6591 38 1 3.7087 -8.9871 3.1116 39 1 6.0469 -9.4068 3.8178 40 1 6.3377 -7.6621 3.9394 41 1 5.7593 -9.2564 1.4233 42 1 7.2855 -8.4710 1.8716 43 1 5.9854 -7.1479 0.1698 44 1 6.2116 -6.2381 1.6917 45 1 2.3905 -8.5827 2.6529 46 1 1.3013 -10.6184 1.7972 47 1 1.8847 -11.4818 -0.4338 48 1 3.5518 -10.3052 -1.8121 49 1 4.6356 -8.2653 -0.9593 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324266818.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:29 Heat of formation + Delta-G solvation = 75.337695 kcal Electronic energy + Delta-G solvation = -27493.092974 eV Core-core repulsion = 24002.584715 eV Total energy + Delta-G solvation = -3490.508259 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.09898 -38.33141 -36.81720 -35.65305 -32.86076 -32.56092 -31.11696 -30.64204 -30.00144 -27.36786 -26.27384 -25.61575 -23.17125 -22.88171 -22.25132 -21.70019 -20.91455 -20.18060 -19.35939 -16.49415 -16.30767 -16.25482 -15.82040 -15.65200 -15.38014 -15.04549 -14.50941 -14.45997 -14.07203 -14.02204 -13.81968 -13.56848 -13.27022 -12.91169 -12.74492 -12.38800 -12.28375 -11.96855 -11.88516 -11.78243 -11.51659 -11.47688 -11.32026 -11.02062 -10.80520 -10.76445 -10.71944 -10.44911 -10.27147 -10.14867 -9.86493 -9.32013 -9.04473 -8.99142 -8.75336 -8.73550 -8.59170 -8.06890 -6.04543 -4.05326 1.14427 1.20967 3.34569 3.39106 3.45537 3.53468 3.79581 4.29459 4.40724 4.42491 4.71482 4.72329 4.77753 4.83709 4.93248 4.93997 4.97232 5.17626 5.26243 5.31087 5.31434 5.31900 5.39654 5.42643 5.52343 5.55242 5.63386 5.70586 5.75600 5.79542 5.84167 5.88362 5.94886 6.00143 6.01529 6.07570 6.11297 6.18162 6.22690 6.26457 6.33508 6.37620 6.40147 6.47432 6.60422 6.80805 7.17413 7.26556 7.50969 7.87365 8.23961 8.69306 9.09635 9.59311 11.07235 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.003240 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.981407 B = 8640.455996 C = 9305.165179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.509 4.509 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.381 6.381 11 C 0.071 3.929 12 C 0.016 3.984 13 N -0.408 5.408 14 C -0.033 4.033 15 C -0.112 4.112 16 H 0.109 0.891 17 C -0.139 4.139 18 C -0.111 4.111 19 C -0.114 4.114 20 C -0.086 4.086 21 C 0.069 3.931 22 C -0.079 4.079 23 C -0.130 4.130 24 C -0.126 4.126 25 C -0.122 4.122 26 C -0.121 4.121 27 C -0.105 4.105 28 H 0.263 0.737 29 H 0.001 0.999 30 H 0.003 0.997 31 H 0.034 0.966 32 H 0.037 0.963 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.152 0.848 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.120 0.880 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.886 -24.828 4.569 26.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.548 4.548 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.301 6.301 11 C -0.007 4.007 12 C -0.112 4.112 13 N -0.128 5.128 14 C -0.160 4.160 15 C -0.131 4.131 16 H 0.127 0.873 17 C -0.176 4.176 18 C -0.149 4.149 19 C -0.153 4.153 20 C -0.124 4.124 21 C -0.022 4.022 22 C -0.081 4.081 23 C -0.148 4.148 24 C -0.144 4.144 25 C -0.140 4.140 26 C -0.139 4.139 27 C -0.124 4.124 28 H 0.072 0.928 29 H 0.019 0.981 30 H 0.021 0.979 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.118 0.882 37 H 0.082 0.918 38 H 0.114 0.886 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.169 0.831 46 H 0.139 0.861 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.215 -23.912 4.538 25.688 hybrid contribution -0.430 0.175 -0.362 0.589 sum 7.785 -23.737 4.176 25.328 Atomic orbital electron populations 1.69966 1.06101 1.27014 1.50965 1.24945 0.94954 0.99380 0.95289 0.86350 0.79723 0.82335 0.78178 1.20524 1.21132 1.19595 1.21072 0.94085 0.89362 1.50248 0.91541 1.20167 0.88862 0.83938 0.95050 1.87942 1.34703 1.12387 1.95018 1.22135 0.93771 0.86108 0.98685 1.22779 0.97053 0.96963 0.94425 1.69804 1.10539 1.29359 1.03093 1.24564 0.96307 1.00210 0.94945 1.22772 0.97763 0.98159 0.94406 0.87259 1.22208 0.97033 0.97579 1.00766 1.21401 0.95840 1.01252 0.96367 1.21554 1.00270 0.97724 0.95706 1.21266 0.92339 0.98261 1.00491 1.21222 0.95270 0.88099 0.97608 1.20027 0.96856 0.96371 0.94798 1.21719 0.96872 0.95631 1.00556 1.21186 1.00141 0.96709 0.96355 1.21140 0.98096 1.00000 0.94813 1.21131 0.97195 0.95794 0.99790 1.21011 0.99829 0.96107 0.95414 0.92767 0.98084 0.97950 0.94800 0.94535 0.92715 0.90235 0.89687 0.88179 0.91784 0.88626 0.92382 0.92316 0.91984 0.92078 0.91984 0.90486 0.83078 0.86056 0.86330 0.86172 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.69 13.29 55.43 0.74 -26.96 16 2 C 0.05 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 22.48 29.54 -169.99 -5.02 17.45 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -15.60 9.43 -34.44 -0.32 -15.92 16 8 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 9 C 0.19 5.59 5.69 36.01 0.20 5.80 16 10 O -0.38 -9.80 10.27 -35.23 -0.36 -10.16 16 11 C 0.07 1.43 6.14 37.16 0.23 1.66 16 12 C 0.02 0.26 4.74 -3.83 -0.02 0.25 16 13 N -0.41 -6.51 6.33 -293.95 -1.86 -8.37 16 14 C -0.03 -0.44 6.14 -22.79 -0.14 -0.58 16 15 C -0.11 -1.31 3.65 -91.39 -0.33 -1.64 16 16 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 17 C -0.14 -1.27 5.28 -26.83 -0.14 -1.41 16 18 C -0.11 -0.97 5.78 -26.56 -0.15 -1.12 16 19 C -0.11 -1.06 5.53 -26.40 -0.15 -1.20 16 20 C -0.09 -0.97 5.44 -26.86 -0.15 -1.11 16 21 C 0.07 0.85 1.38 -152.88 -0.21 0.64 16 22 C -0.08 -0.86 1.13 -104.62 -0.12 -0.98 16 23 C -0.13 -1.29 5.08 -39.58 -0.20 -1.49 16 24 C -0.13 -1.12 10.05 -39.58 -0.40 -1.52 16 25 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 26 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 27 C -0.11 -1.11 7.74 -39.59 -0.31 -1.42 16 28 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 30 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 31 H 0.03 0.67 7.65 -51.93 -0.40 0.27 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.81 5.58 -51.93 -0.29 0.52 16 34 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.10 1.20 3.54 -52.40 -0.19 1.01 16 37 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 38 H 0.10 0.85 3.60 -53.02 -0.19 0.66 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.59 6.51 -51.93 -0.34 0.26 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.69 7.13 -51.93 -0.37 0.32 16 44 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 45 H 0.15 1.39 3.94 -52.49 -0.21 1.18 16 46 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 47 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 48 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 49 H 0.12 1.25 7.07 -52.49 -0.37 0.88 16 LS Contribution 364.35 15.07 5.49 5.49 Total: -1.00 -32.91 364.35 -11.93 -44.84 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -7.81 Total: -0.76 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -3.10 Total: -21.54 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: -1.13 Total: -35.33 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.36 Total: -10.16 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.91 -11.93 -44.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324266818.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.175 kcal (2) G-P(sol) polarization free energy of solvation -32.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds