Wall clock time and date at job start Tue Mar 31 2020 11:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99752 * 2 1 4 4 H 1.48504 * 109.46850 * 269.99623 * 3 2 1 5 5 H 1.48493 * 109.47250 * 29.99721 * 3 2 1 6 6 H 1.48497 * 109.46969 * 150.00225 * 3 2 1 7 7 C 1.37874 * 120.00344 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00186 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00031 * 0.02562 * 7 2 1 10 10 O 1.42894 * 109.47117 * 179.97438 * 9 7 2 11 11 C 1.42905 * 113.99821 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46979 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47401 * 64.99789 * 12 11 10 14 14 C 1.49553 * 111.00113 * 76.30458 * 13 12 11 15 15 C 1.50444 * 85.02879 * 149.11373 * 14 13 12 16 16 H 1.08998 * 113.73155 * 76.18359 * 15 14 13 17 17 C 1.51833 * 124.08718 * 221.62488 * 15 14 13 18 18 C 1.53952 * 106.24046 * 153.46830 * 17 15 14 19 19 C 1.52368 * 112.55883 * 303.19425 * 18 17 15 20 20 C 1.54253 * 112.13209 * 53.52008 * 19 18 17 21 21 C 1.43575 * 111.00418 * 167.94775 * 13 12 11 22 22 C 1.50706 * 112.04088 * 323.57450 * 21 13 12 23 23 C 1.38243 * 119.99681 * 279.09860 * 22 21 13 24 24 C 1.38231 * 119.99609 * 179.78821 * 23 22 21 25 25 C 1.38241 * 120.00359 * 0.44494 * 24 23 22 26 26 C 1.38236 * 119.99461 * 359.81118 * 25 24 23 27 27 C 1.38231 * 120.00445 * 359.97335 * 26 25 24 28 28 H 0.96997 * 120.00612 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46672 * 59.99787 * 9 7 2 30 30 H 1.08992 * 109.46765 * 300.00256 * 9 7 2 31 31 H 1.08995 * 109.46534 * 299.99503 * 11 10 9 32 32 H 1.08995 * 109.47395 * 59.99917 * 11 10 9 33 33 H 1.08999 * 109.47136 * 184.99676 * 12 11 10 34 34 H 1.09001 * 109.47213 * 304.99247 * 12 11 10 35 35 H 1.09001 * 113.94482 * 263.13080 * 14 13 12 36 36 H 1.08994 * 113.94220 * 34.95019 * 14 13 12 37 37 H 1.09007 * 110.09221 * 272.64366 * 17 15 14 38 38 H 1.09001 * 110.09521 * 34.28542 * 17 15 14 39 39 H 1.09000 * 108.86354 * 182.40236 * 18 17 15 40 40 H 1.08994 * 108.78515 * 63.93264 * 18 17 15 41 41 H 1.09005 * 108.95180 * 292.83492 * 19 18 17 42 42 H 1.08998 * 108.87808 * 174.15630 * 19 18 17 43 43 H 1.09001 * 110.19006 * 184.19681 * 20 19 18 44 44 H 1.09006 * 110.29322 * 62.37281 * 20 19 18 45 45 H 1.07994 * 119.99994 * 0.02562 * 23 22 21 46 46 H 1.08003 * 119.99937 * 180.27763 * 24 23 22 47 47 H 1.07992 * 120.00039 * 179.83702 * 25 24 23 48 48 H 1.08003 * 119.99614 * 180.02562 * 26 25 24 49 49 H 1.08002 * 120.00111 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6482 -5.9561 0.0006 13 7 3.4074 -5.8878 1.2564 14 6 2.6278 -6.4801 2.3869 15 6 3.9732 -6.8581 2.9442 16 1 4.5137 -6.0231 3.3900 17 6 4.2792 -8.1947 3.5961 18 6 5.7875 -8.4337 3.4010 19 6 6.1996 -8.4002 1.9345 20 6 5.7404 -7.1064 1.2311 21 6 4.2388 -7.0471 1.4188 22 6 3.5759 -8.2960 0.8971 23 6 2.6439 -8.9595 1.6731 24 6 2.0327 -10.1025 1.1928 25 6 2.3602 -10.5873 -0.0597 26 6 3.2962 -9.9267 -0.8334 27 6 3.9041 -8.7812 -0.3550 28 1 -0.4851 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8902 31 1 0.9449 -4.9827 0.8897 32 1 0.9454 -4.9823 -0.8902 33 1 2.1824 -6.9374 -0.0893 34 1 3.3223 -5.7955 -0.8407 35 1 2.0911 -5.7453 2.9870 36 1 2.0103 -7.3312 2.1003 37 1 4.0407 -8.1562 4.6591 38 1 3.7087 -8.9871 3.1116 39 1 6.0469 -9.4068 3.8178 40 1 6.3377 -7.6621 3.9394 41 1 5.7593 -9.2564 1.4233 42 1 7.2855 -8.4710 1.8716 43 1 5.9854 -7.1479 0.1698 44 1 6.2116 -6.2381 1.6917 45 1 2.3905 -8.5827 2.6529 46 1 1.3013 -10.6184 1.7972 47 1 1.8847 -11.4818 -0.4338 48 1 3.5518 -10.3052 -1.8121 49 1 4.6356 -8.2653 -0.9593 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324266818.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:28 Heat of formation + Delta-G solvation = 53.951865 kcal Electronic energy + Delta-G solvation = -27494.020333 eV Core-core repulsion = 24002.584715 eV Total energy + Delta-G solvation = -3491.435619 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.05113 -39.15414 -38.59449 -36.75074 -34.96822 -33.60808 -32.20267 -31.61369 -30.82655 -29.36761 -27.53638 -26.74017 -24.53274 -24.02654 -23.68248 -22.83044 -21.87383 -21.17090 -20.20078 -18.65476 -17.58957 -17.38126 -17.16398 -16.62289 -16.46370 -16.37208 -16.16743 -15.81865 -15.27295 -15.00347 -14.91516 -14.70725 -14.37067 -14.12420 -13.89407 -13.64252 -13.31824 -13.20954 -13.11376 -12.92341 -12.78043 -12.69524 -12.69143 -12.45198 -12.26569 -12.17344 -11.93194 -11.79257 -11.58900 -11.32307 -11.18437 -10.95761 -10.89596 -10.31498 -10.17387 -9.82568 -9.64484 -9.47865 -8.34044 -6.46613 0.39850 0.48282 1.37501 1.41027 1.53361 2.33377 2.69336 2.92143 2.99231 3.16740 3.30172 3.52837 3.83952 3.97454 3.99498 4.06733 4.08923 4.17865 4.21932 4.25208 4.28436 4.37994 4.40142 4.51787 4.58618 4.61044 4.62334 4.66664 4.71181 4.74580 4.81062 4.87298 4.93685 4.98468 5.05966 5.13485 5.14879 5.17816 5.22910 5.25428 5.32012 5.36357 5.45471 5.52783 5.55624 5.58606 5.64453 5.68646 5.94075 6.09079 6.15233 6.52717 6.81446 7.25500 8.78594 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.003240 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.981407 B = 8640.455996 C = 9305.165179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.985 3.015 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.210 3.790 10 O -0.397 6.397 11 C 0.063 3.937 12 C 0.032 3.968 13 N -0.451 5.451 14 C -0.033 4.033 15 C -0.103 4.103 16 H 0.090 0.910 17 C -0.132 4.132 18 C -0.111 4.111 19 C -0.106 4.106 20 C -0.088 4.088 21 C 0.070 3.930 22 C -0.089 4.089 23 C -0.138 4.138 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.125 4.125 27 C -0.118 4.118 28 H 0.271 0.729 29 H -0.017 1.017 30 H -0.018 1.018 31 H 0.035 0.965 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.120 0.880 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.158 0.842 46 H 0.145 0.855 47 H 0.142 0.858 48 H 0.137 0.863 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.360 -26.429 4.905 28.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.807 3.193 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.077 0.923 9 C 0.135 3.865 10 O -0.316 6.316 11 C -0.014 4.014 12 C -0.096 4.096 13 N -0.171 5.171 14 C -0.159 4.159 15 C -0.122 4.122 16 H 0.108 0.892 17 C -0.168 4.168 18 C -0.149 4.149 19 C -0.144 4.144 20 C -0.127 4.127 21 C -0.021 4.021 22 C -0.090 4.090 23 C -0.156 4.156 24 C -0.143 4.143 25 C -0.141 4.141 26 C -0.143 4.143 27 C -0.137 4.137 28 H 0.080 0.920 29 H 0.001 0.999 30 H -0.001 1.001 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.137 0.863 37 H 0.094 0.906 38 H 0.122 0.878 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.175 0.825 46 H 0.163 0.837 47 H 0.160 0.840 48 H 0.154 0.846 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.687 -25.541 4.874 27.415 hybrid contribution -0.621 0.582 -0.490 0.982 sum 8.066 -24.959 4.384 26.594 Atomic orbital electron populations 1.70068 1.07758 1.28692 1.50489 1.25976 0.95995 1.03388 0.93794 0.85168 0.78320 0.76886 0.78942 1.19095 1.19605 1.19049 1.21361 0.93960 0.90887 1.52326 0.92346 1.19798 0.88661 0.84991 0.93088 1.87903 1.34832 1.13875 1.95039 1.22457 0.95359 0.84573 0.99008 1.22600 0.95894 0.96221 0.94902 1.69815 1.11920 1.32233 1.03125 1.24657 0.97102 1.00128 0.94060 1.22630 0.96108 0.98990 0.94457 0.89192 1.22207 0.97506 0.95852 1.01282 1.21421 0.95358 1.02162 0.95928 1.21492 1.00880 0.96208 0.95836 1.21311 0.91871 0.98953 1.00524 1.21226 0.95458 0.87564 0.97829 1.19879 0.97741 0.96028 0.95376 1.21798 0.96828 0.96192 1.00774 1.21491 0.99994 0.96154 0.96642 1.21477 0.97508 1.00504 0.94599 1.21377 0.97013 0.95246 1.00632 1.21077 1.00325 0.96869 0.95400 0.91973 0.99887 1.00056 0.94630 0.93877 0.90538 0.91371 0.91670 0.86314 0.90562 0.87776 0.90547 0.92609 0.91846 0.91003 0.92307 0.92077 0.82537 0.83739 0.84019 0.84556 0.86592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.98 46.08 29.54 68.60 2.03 48.11 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.55 -34.52 9.43 25.60 0.24 -34.28 16 8 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 9 C 0.21 12.62 5.69 71.24 0.41 13.03 16 10 O -0.40 -21.33 10.27 -148.98 -1.53 -22.86 16 11 C 0.06 2.64 6.14 71.98 0.44 3.08 16 12 C 0.03 1.08 4.74 86.30 0.41 1.49 16 13 N -0.45 -14.86 6.33 ******* -6.87 -21.72 16 14 C -0.03 -0.89 6.14 72.54 0.45 -0.44 16 15 C -0.10 -2.41 3.65 -10.80 -0.04 -2.45 16 16 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 17 C -0.13 -2.20 5.28 30.53 0.16 -2.04 16 18 C -0.11 -1.75 5.78 30.71 0.18 -1.57 16 19 C -0.11 -1.83 5.53 30.81 0.17 -1.66 16 20 C -0.09 -2.03 5.44 30.51 0.17 -1.86 16 21 C 0.07 1.73 1.38 -8.49 -0.01 1.72 16 22 C -0.09 -1.85 1.13 -19.86 -0.02 -1.87 16 23 C -0.14 -2.45 5.08 22.27 0.11 -2.34 16 24 C -0.12 -1.84 10.05 22.27 0.22 -1.62 16 25 C -0.12 -1.77 10.05 22.27 0.22 -1.55 16 26 C -0.12 -2.05 10.05 22.27 0.22 -1.83 16 27 C -0.12 -2.36 7.74 22.27 0.17 -2.19 16 28 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 29 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 30 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 31 H 0.04 1.46 7.65 -2.39 -0.02 1.44 16 32 H 0.04 1.71 8.14 -2.39 -0.02 1.70 16 33 H 0.08 2.23 5.58 -2.39 -0.01 2.22 16 34 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.12 2.76 3.54 -2.83 -0.01 2.75 16 37 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.10 1.61 3.60 -3.41 -0.01 1.60 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 1.10 6.51 -2.38 -0.02 1.09 16 42 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.06 1.35 7.13 -2.39 -0.02 1.33 16 44 H 0.06 1.55 8.12 -2.38 -0.02 1.53 16 45 H 0.16 2.56 3.94 -2.91 -0.01 2.55 16 46 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 47 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 48 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 49 H 0.12 2.37 7.07 -2.91 -0.02 2.35 16 Total: -1.00 -72.21 364.35 -1.20 -73.40 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.92 Total: 16.08 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 3.96 Total: -35.50 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: -6.58 Total: -79.24 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -1.53 Total: -22.86 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -72.21 -1.20 -73.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324266818.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.354 kcal (2) G-P(sol) polarization free energy of solvation -72.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds