Wall clock time and date at job start Tue Mar 31 2020 10:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50705 * 119.99872 * 2 1 4 4 C 1.50698 * 120.00358 * 179.97438 * 2 1 3 5 5 N 1.46501 * 109.46555 * 94.57107 * 4 2 1 6 6 C 1.36735 * 127.13884 * 90.26093 * 5 4 2 7 7 C 1.50707 * 126.34594 * 359.96540 * 6 5 4 8 8 H 1.09005 * 115.54710 * 334.56254 * 7 6 5 9 9 C 1.52997 * 117.50008 * 188.89712 * 7 6 5 10 10 C 1.52989 * 117.50144 * 120.27325 * 7 6 5 11 11 H 1.09001 * 117.50350 * 359.97438 * 10 7 6 12 12 C 1.47205 * 117.50118 * 214.97970 * 10 7 6 13 13 N 6.38744 * 173.61737 * 139.90269 * 2 1 3 14 14 N 1.30296 * 107.30842 * 180.22326 * 6 5 4 15 15 N 1.28524 * 110.05161 * 359.77667 * 14 6 5 16 16 C 1.31221 * 109.86167 * 359.97438 * 15 14 6 17 17 N 1.38574 * 126.47235 * 179.97438 * 16 15 14 18 18 C 1.46907 * 110.99782 * 106.79227 * 17 16 15 19 19 C 1.46906 * 111.00116 * 342.83921 * 17 16 15 20 20 H 1.09002 * 109.47101 * 60.00138 * 19 17 16 21 21 C 1.52996 * 109.46851 * 299.99571 * 19 17 16 22 22 C 1.50700 * 109.46955 * 179.97438 * 19 17 16 23 23 H 1.08004 * 120.00295 * 0.02562 * 22 19 17 24 24 C 1.37872 * 119.99824 * 179.97438 * 22 19 17 25 25 N 1.31519 * 120.00213 * 180.02562 * 24 22 19 26 26 Si 1.86802 * 120.00241 * 0.02562 * 24 22 19 27 27 H 1.48509 * 109.46900 * 269.99820 * 26 24 22 28 28 H 1.48495 * 109.47374 * 150.00071 * 26 24 22 29 29 H 1.48498 * 109.46939 * 29.99651 * 26 24 22 30 30 H 1.07993 * 120.00401 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99345 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46516 * 274.06547 * 3 2 1 33 33 H 1.08998 * 109.46800 * 34.05908 * 3 2 1 34 34 H 1.08995 * 109.47218 * 154.06316 * 3 2 1 35 35 H 1.09005 * 109.47358 * 334.57603 * 4 2 1 36 36 H 1.08997 * 109.47246 * 214.57122 * 4 2 1 37 37 H 1.09004 * 117.49914 * 359.97438 * 9 7 6 38 38 H 1.09002 * 117.50225 * 145.01550 * 9 7 6 39 39 H 1.09000 * 109.46876 * 289.40457 * 18 17 16 40 40 H 1.08993 * 109.47111 * 49.40984 * 18 17 16 41 41 H 1.09000 * 109.46762 * 169.40848 * 18 17 16 42 42 H 1.09001 * 109.46768 * 60.00474 * 21 19 17 43 43 H 1.09000 * 109.46794 * 180.02562 * 21 19 17 44 44 H 1.08993 * 109.47883 * 300.00407 * 21 19 17 45 45 H 0.96999 * 120.00455 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3050 0.0006 5 7 2.4031 -1.6734 -1.3761 6 6 3.5375 -1.3417 -2.0636 7 6 4.6881 -0.5186 -1.5443 8 1 4.4433 0.1789 -0.7432 9 6 5.7620 -0.0932 -2.5476 10 6 6.0691 -1.1762 -1.5115 11 1 6.1455 -2.2044 -1.8651 12 6 6.9659 -0.8189 -0.4001 13 7 7.6579 -0.5432 0.4574 14 7 3.4369 -1.8645 -3.2529 15 7 2.3267 -2.5030 -3.3611 16 6 1.6542 -2.4215 -2.2372 17 7 0.4147 -2.9835 -1.9764 18 6 0.5395 -4.1410 -1.0804 19 6 -0.2682 -3.3541 -3.2232 20 1 0.3369 -4.0794 -3.7672 21 6 -0.4671 -2.1064 -4.0860 22 6 -1.6092 -3.9611 -2.9001 23 1 -1.9230 -4.0611 -1.8715 24 6 -2.4359 -4.3877 -3.9177 25 7 -3.6065 -4.9169 -3.6358 26 14 -1.8936 -4.2140 -5.6967 27 1 -2.3373 -2.8982 -6.2233 28 1 -2.4989 -5.3011 -6.5072 29 1 -0.4134 -4.3045 -5.7740 30 1 -0.5400 0.9352 -0.0004 31 1 -0.5399 -0.9354 0.0004 32 1 2.1820 1.6561 -1.0251 33 1 1.5078 2.0454 0.5755 34 1 3.0455 1.1578 0.4495 35 1 1.4415 -2.0837 0.4421 36 1 2.9781 -1.1963 0.5836 37 1 5.6366 -0.4091 -3.5833 38 1 6.2240 0.8839 -2.4064 39 1 1.0115 -4.9652 -1.6152 40 1 1.1500 -3.8696 -0.2192 41 1 -0.4505 -4.4470 -0.7421 42 1 0.5030 -1.6678 -4.3196 43 1 -0.9742 -2.3813 -5.0108 44 1 -1.0722 -1.3811 -3.5420 45 1 -4.1880 -5.2174 -4.3516 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342279752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:13 Heat of formation + Delta-G solvation = 180.476765 kcal Electronic energy + Delta-G solvation = -26932.226575 eV Core-core repulsion = 23375.029895 eV Total energy + Delta-G solvation = -3557.196680 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.78388 -38.64339 -37.33790 -36.84384 -35.90784 -33.44134 -32.70943 -30.32800 -29.56237 -27.74629 -26.99788 -25.73196 -24.78623 -24.47799 -23.84332 -21.85917 -20.68104 -19.39820 -18.84188 -18.22162 -17.10651 -16.75784 -16.04977 -15.75679 -15.25077 -14.90933 -14.67229 -14.49703 -14.15886 -13.90435 -13.80108 -13.46514 -13.36310 -13.21384 -12.80501 -12.65765 -12.28850 -12.26149 -12.23306 -11.96178 -11.82760 -11.51610 -11.31364 -11.20620 -11.10667 -10.88523 -10.78176 -10.68757 -10.29504 -10.14242 -9.90610 -9.52128 -9.42435 -9.27895 -8.81400 -8.63409 -7.69555 -6.15981 -4.17379 1.68716 1.87059 2.29323 2.40609 2.68296 3.08721 3.28037 3.39278 3.43668 3.45266 3.64943 4.20300 4.24091 4.30229 4.36476 4.37337 4.50337 4.57286 4.69043 4.98100 5.16686 5.21745 5.23784 5.32064 5.41560 5.46048 5.47265 5.63276 5.72781 5.77869 5.89110 5.94816 6.01466 6.12110 6.38099 6.42948 6.49057 6.50314 6.57753 6.67630 6.81947 6.92738 7.12182 7.19234 7.41766 7.58533 7.85648 8.46456 8.83995 9.08006 9.44715 10.95616 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.017904 B = 0.003994 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.543421 B = 7009.404563 C = 7699.387050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.173 4.173 3 C -0.113 4.113 4 C 0.150 3.850 5 N -0.470 5.470 6 C 0.175 3.825 7 C -0.041 4.041 8 H 0.129 0.871 9 C -0.114 4.114 10 C -0.063 4.063 11 H 0.154 0.846 12 C 0.238 3.762 13 N -0.430 5.430 14 N -0.275 5.275 15 N -0.320 5.320 16 C 0.389 3.611 17 N -0.448 5.448 18 C 0.042 3.958 19 C 0.201 3.799 20 H 0.024 0.976 21 C -0.147 4.147 22 C -0.517 4.517 23 H 0.084 0.916 24 C 0.078 3.922 25 N -0.895 5.895 26 Si 0.880 3.120 27 H -0.277 1.277 28 H -0.296 1.296 29 H -0.260 1.260 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.131 0.869 38 H 0.112 0.888 39 H 0.037 0.963 40 H 0.046 0.954 41 H 0.098 0.902 42 H 0.043 0.957 43 H 0.046 0.954 44 H 0.052 0.948 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.142 10.307 7.328 18.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.174 4.174 3 C -0.170 4.170 4 C 0.028 3.972 5 N -0.164 5.164 6 C -0.092 4.092 7 C -0.063 4.063 8 H 0.147 0.853 9 C -0.154 4.154 10 C -0.086 4.086 11 H 0.171 0.829 12 C -0.080 4.080 13 N -0.106 5.106 14 N -0.116 5.116 15 N -0.165 5.165 16 C 0.034 3.966 17 N -0.173 5.173 18 C -0.105 4.105 19 C 0.095 3.905 20 H 0.042 0.958 21 C -0.205 4.205 22 C -0.555 4.555 23 H 0.102 0.898 24 C -0.125 4.125 25 N -0.532 5.532 26 Si 0.710 3.290 27 H -0.204 1.204 28 H -0.224 1.224 29 H -0.185 1.185 30 H 0.119 0.881 31 H 0.132 0.868 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.121 0.879 36 H 0.110 0.890 37 H 0.149 0.851 38 H 0.131 0.869 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.117 0.883 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.042 10.562 7.396 19.812 hybrid contribution -0.302 -0.195 -0.284 0.458 sum 14.740 10.366 7.112 19.373 Atomic orbital electron populations 1.24039 0.95080 1.03180 0.94849 1.21677 0.95751 0.94679 1.05315 1.20825 0.99535 0.94501 1.02129 1.20832 1.00773 0.96029 0.79591 1.46166 1.16458 1.40167 1.13611 1.23063 0.89923 1.05346 0.90823 1.20066 0.84093 0.99188 1.02985 0.85346 1.23269 0.97237 0.97809 0.97050 1.19467 0.93340 1.01714 0.94089 0.82867 1.27916 0.93466 0.93209 0.93362 1.81273 1.10046 1.08569 1.10678 1.73874 1.13147 1.10437 1.14117 1.74799 1.00759 1.20896 1.20018 1.23049 0.91273 0.95576 0.86727 1.58928 1.08291 1.30145 1.19933 1.22352 1.03675 0.90230 0.94228 1.19750 0.94227 0.93380 0.83128 0.95824 1.22172 0.99945 0.99270 0.99095 1.20853 0.98835 1.40029 0.95774 0.89780 1.24813 0.94519 0.94303 0.98846 1.69857 1.09317 1.41005 1.33029 0.86948 0.79940 0.76917 0.85198 1.20425 1.22371 1.18478 0.88082 0.86793 0.91575 0.91553 0.92347 0.87851 0.88971 0.85109 0.86940 0.94403 0.93534 0.88320 0.93779 0.93586 0.92898 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 13.90 29.01 0.40 -1.14 16 2 C -0.17 -1.83 5.63 -101.07 -0.57 -2.40 16 3 C -0.11 -0.95 9.68 36.01 0.35 -0.60 16 4 C 0.15 1.61 6.07 -5.19 -0.03 1.58 16 5 N -0.47 -6.58 2.79 -115.36 -0.32 -6.90 16 6 C 0.18 2.31 7.59 -154.01 -1.17 1.14 16 7 C -0.04 -0.35 5.54 -91.78 -0.51 -0.86 16 8 H 0.13 0.90 6.69 -51.93 -0.35 0.55 16 9 C -0.11 -0.77 9.82 -26.74 -0.26 -1.03 16 10 C -0.06 -0.47 5.92 -93.41 -0.55 -1.02 16 11 H 0.15 1.10 8.14 -51.93 -0.42 0.67 16 12 C 0.24 2.16 15.56 -20.76 -0.32 1.84 16 13 N -0.43 -5.04 18.54 42.15 0.78 -4.25 16 14 N -0.28 -4.62 11.79 32.99 0.39 -4.23 16 15 N -0.32 -6.37 9.81 30.31 0.30 -6.07 16 16 C 0.39 7.04 6.10 -318.88 -1.95 5.09 16 17 N -0.45 -8.67 4.66 -176.08 -0.82 -9.49 16 18 C 0.04 0.72 8.94 60.07 0.54 1.26 16 19 C 0.20 4.66 1.30 -68.86 -0.09 4.57 16 20 H 0.02 0.60 7.00 -51.93 -0.36 0.24 16 21 C -0.15 -3.36 8.49 37.16 0.32 -3.04 16 22 C -0.52 -13.57 8.57 -34.44 -0.30 -13.86 16 23 H 0.08 2.32 6.66 -52.48 -0.35 1.97 16 24 C 0.08 2.16 5.45 -17.82 -0.10 2.07 16 25 N -0.89 -26.15 13.96 55.43 0.77 -25.38 16 26 Si 0.88 21.71 24.37 -169.99 -4.14 17.57 16 27 H -0.28 -6.72 6.87 56.52 0.39 -6.34 16 28 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 29 H -0.26 -6.37 6.53 56.52 0.37 -6.00 16 30 H 0.10 1.04 8.05 -52.49 -0.42 0.62 16 31 H 0.11 1.50 8.00 -52.49 -0.42 1.08 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 34 H 0.06 0.40 6.98 -51.93 -0.36 0.03 16 35 H 0.10 1.11 6.16 -51.93 -0.32 0.79 16 36 H 0.09 0.75 7.85 -51.93 -0.41 0.35 16 37 H 0.13 0.97 7.92 -51.93 -0.41 0.56 16 38 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.04 0.67 8.12 -51.93 -0.42 0.25 16 40 H 0.05 0.63 6.28 -51.93 -0.33 0.31 16 41 H 0.10 1.77 6.49 -51.93 -0.34 1.43 16 42 H 0.04 0.98 6.09 -51.93 -0.32 0.66 16 43 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 44 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 369.53 15.07 5.57 5.57 Total: -1.00 -32.25 369.53 -7.98 -40.23 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -6.27 Total: -0.63 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -4.24 Total: -6.41 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 1.10 Total: -56.33 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.14 Total: 17.57 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.25 -7.98 -40.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342279752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.708 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds