Wall clock time and date at job start Tue Mar 31 2020 10:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50705 * 119.99872 * 2 1 4 4 C 1.50698 * 120.00358 * 179.97438 * 2 1 3 5 5 N 1.46501 * 109.46555 * 94.57107 * 4 2 1 6 6 C 1.36735 * 127.13884 * 90.26093 * 5 4 2 7 7 C 1.50707 * 126.34594 * 359.96540 * 6 5 4 8 8 H 1.09005 * 115.54710 * 334.56254 * 7 6 5 9 9 C 1.52997 * 117.50008 * 188.89712 * 7 6 5 10 10 C 1.52989 * 117.50144 * 120.27325 * 7 6 5 11 11 H 1.09001 * 117.50350 * 359.97438 * 10 7 6 12 12 C 1.47205 * 117.50118 * 214.97970 * 10 7 6 13 13 N 6.38744 * 173.61737 * 139.90269 * 2 1 3 14 14 N 1.30296 * 107.30842 * 180.22326 * 6 5 4 15 15 N 1.28524 * 110.05161 * 359.77667 * 14 6 5 16 16 C 1.31221 * 109.86167 * 359.97438 * 15 14 6 17 17 N 1.38574 * 126.47235 * 179.97438 * 16 15 14 18 18 C 1.46907 * 110.99782 * 106.79227 * 17 16 15 19 19 C 1.46906 * 111.00116 * 342.83921 * 17 16 15 20 20 H 1.09002 * 109.47101 * 60.00138 * 19 17 16 21 21 C 1.52996 * 109.46851 * 299.99571 * 19 17 16 22 22 C 1.50700 * 109.46955 * 179.97438 * 19 17 16 23 23 H 1.08004 * 120.00295 * 0.02562 * 22 19 17 24 24 C 1.37872 * 119.99824 * 179.97438 * 22 19 17 25 25 N 1.31519 * 120.00213 * 180.02562 * 24 22 19 26 26 Si 1.86802 * 120.00241 * 0.02562 * 24 22 19 27 27 H 1.48509 * 109.46900 * 269.99820 * 26 24 22 28 28 H 1.48495 * 109.47374 * 150.00071 * 26 24 22 29 29 H 1.48498 * 109.46939 * 29.99651 * 26 24 22 30 30 H 1.07993 * 120.00401 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99345 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46516 * 274.06547 * 3 2 1 33 33 H 1.08998 * 109.46800 * 34.05908 * 3 2 1 34 34 H 1.08995 * 109.47218 * 154.06316 * 3 2 1 35 35 H 1.09005 * 109.47358 * 334.57603 * 4 2 1 36 36 H 1.08997 * 109.47246 * 214.57122 * 4 2 1 37 37 H 1.09004 * 117.49914 * 359.97438 * 9 7 6 38 38 H 1.09002 * 117.50225 * 145.01550 * 9 7 6 39 39 H 1.09000 * 109.46876 * 289.40457 * 18 17 16 40 40 H 1.08993 * 109.47111 * 49.40984 * 18 17 16 41 41 H 1.09000 * 109.46762 * 169.40848 * 18 17 16 42 42 H 1.09001 * 109.46768 * 60.00474 * 21 19 17 43 43 H 1.09000 * 109.46794 * 180.02562 * 21 19 17 44 44 H 1.08993 * 109.47883 * 300.00407 * 21 19 17 45 45 H 0.96999 * 120.00455 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3050 0.0006 5 7 2.4031 -1.6734 -1.3761 6 6 3.5375 -1.3417 -2.0636 7 6 4.6881 -0.5186 -1.5443 8 1 4.4433 0.1789 -0.7432 9 6 5.7620 -0.0932 -2.5476 10 6 6.0691 -1.1762 -1.5115 11 1 6.1455 -2.2044 -1.8651 12 6 6.9659 -0.8189 -0.4001 13 7 7.6579 -0.5432 0.4574 14 7 3.4369 -1.8645 -3.2529 15 7 2.3267 -2.5030 -3.3611 16 6 1.6542 -2.4215 -2.2372 17 7 0.4147 -2.9835 -1.9764 18 6 0.5395 -4.1410 -1.0804 19 6 -0.2682 -3.3541 -3.2232 20 1 0.3369 -4.0794 -3.7672 21 6 -0.4671 -2.1064 -4.0860 22 6 -1.6092 -3.9611 -2.9001 23 1 -1.9230 -4.0611 -1.8715 24 6 -2.4359 -4.3877 -3.9177 25 7 -3.6065 -4.9169 -3.6358 26 14 -1.8936 -4.2140 -5.6967 27 1 -2.3373 -2.8982 -6.2233 28 1 -2.4989 -5.3011 -6.5072 29 1 -0.4134 -4.3045 -5.7740 30 1 -0.5400 0.9352 -0.0004 31 1 -0.5399 -0.9354 0.0004 32 1 2.1820 1.6561 -1.0251 33 1 1.5078 2.0454 0.5755 34 1 3.0455 1.1578 0.4495 35 1 1.4415 -2.0837 0.4421 36 1 2.9781 -1.1963 0.5836 37 1 5.6366 -0.4091 -3.5833 38 1 6.2240 0.8839 -2.4064 39 1 1.0115 -4.9652 -1.6152 40 1 1.1500 -3.8696 -0.2192 41 1 -0.4505 -4.4470 -0.7421 42 1 0.5030 -1.6678 -4.3196 43 1 -0.9742 -2.3813 -5.0108 44 1 -1.0722 -1.3811 -3.5420 45 1 -4.1880 -5.2174 -4.3516 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342279752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:12 Heat of formation + Delta-G solvation = 162.709997 kcal Electronic energy + Delta-G solvation = -26932.997000 eV Core-core repulsion = 23375.029895 eV Total energy + Delta-G solvation = -3557.967104 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.00007 -39.48572 -38.77676 -37.78165 -36.69660 -34.91215 -34.29244 -32.16257 -30.82471 -28.56811 -27.94724 -27.32388 -26.26149 -25.56628 -24.65680 -23.42221 -21.77122 -20.79898 -19.75138 -18.90601 -18.88164 -17.99341 -17.42423 -16.89478 -16.65754 -16.35744 -15.79651 -15.49220 -15.30753 -15.05521 -14.88002 -14.64267 -14.51887 -14.16278 -14.06127 -13.99245 -13.66600 -13.40757 -13.12273 -12.97041 -12.80262 -12.74416 -12.68855 -12.47527 -12.44565 -12.24760 -12.13148 -11.97146 -11.65956 -11.51682 -11.47350 -11.16196 -10.97329 -10.76024 -10.29257 -10.13698 -9.14114 -8.31433 -6.34692 0.65135 0.90933 1.29531 1.37191 1.45600 1.47240 1.63318 1.69095 1.92729 2.30363 2.67989 2.91958 2.95280 3.05449 3.40169 3.53255 3.62907 3.74530 3.76602 3.96411 4.06455 4.21090 4.30263 4.43350 4.47558 4.53911 4.60979 4.63962 4.70004 4.78189 4.82209 4.87026 4.96653 5.00523 5.03588 5.05034 5.07532 5.13212 5.20187 5.30287 5.49349 5.63046 5.70454 5.84247 5.85003 6.17502 6.50375 6.56640 6.69886 7.29883 7.83019 8.83287 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.017904 B = 0.003994 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.543421 B = 7009.404563 C = 7699.387050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.165 4.165 3 C -0.112 4.112 4 C 0.141 3.859 5 N -0.462 5.462 6 C 0.205 3.795 7 C -0.052 4.052 8 H 0.154 0.846 9 C -0.097 4.097 10 C -0.050 4.050 11 H 0.158 0.842 12 C 0.265 3.735 13 N -0.474 5.474 14 N -0.306 5.306 15 N -0.361 5.361 16 C 0.369 3.631 17 N -0.449 5.449 18 C 0.045 3.955 19 C 0.211 3.789 20 H 0.002 0.998 21 C -0.136 4.136 22 C -0.508 4.508 23 H 0.062 0.938 24 C 0.031 3.969 25 N -0.935 5.935 26 Si 0.930 3.070 27 H -0.268 1.268 28 H -0.294 1.294 29 H -0.260 1.260 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.140 0.860 39 H 0.025 0.975 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.050 0.950 43 H 0.037 0.963 44 H 0.051 0.949 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.738 12.404 7.937 22.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.166 4.166 3 C -0.168 4.168 4 C 0.020 3.980 5 N -0.155 5.155 6 C -0.063 4.063 7 C -0.074 4.074 8 H 0.171 0.829 9 C -0.136 4.136 10 C -0.073 4.073 11 H 0.176 0.824 12 C -0.051 4.051 13 N -0.150 5.150 14 N -0.145 5.145 15 N -0.205 5.205 16 C 0.012 3.988 17 N -0.173 5.173 18 C -0.102 4.102 19 C 0.104 3.896 20 H 0.020 0.980 21 C -0.194 4.194 22 C -0.546 4.546 23 H 0.080 0.920 24 C -0.168 4.168 25 N -0.575 5.575 26 Si 0.758 3.242 27 H -0.194 1.194 28 H -0.222 1.222 29 H -0.184 1.184 30 H 0.129 0.871 31 H 0.109 0.891 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.158 0.842 39 H 0.044 0.956 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.660 12.676 8.021 23.171 hybrid contribution -0.998 -0.818 -0.359 1.340 sum 16.662 11.858 7.662 21.839 Atomic orbital electron populations 1.24024 0.95823 1.02620 0.96650 1.21889 0.95449 0.95646 1.03607 1.20866 1.00551 0.93183 1.02227 1.21187 1.02601 0.96101 0.78136 1.46304 1.15889 1.39082 1.14263 1.23880 0.90009 1.02846 0.89549 1.20326 0.82885 0.99479 1.04737 0.82892 1.23417 0.95115 0.98756 0.96271 1.19413 0.91823 1.02334 0.93726 0.82438 1.27978 0.92622 0.91837 0.92664 1.81322 1.11457 1.10167 1.12064 1.73802 1.12538 1.12036 1.16132 1.74679 1.02158 1.22271 1.21386 1.22783 0.91299 0.96984 0.87720 1.58763 1.09661 1.30713 1.18128 1.22348 1.03361 0.89516 0.94945 1.19372 0.92546 0.92881 0.84781 0.97996 1.22027 1.00083 0.98867 0.98434 1.21051 0.99935 1.38954 0.94687 0.91999 1.25455 0.94610 0.94446 1.02293 1.69961 1.10589 1.42845 1.34128 0.86133 0.79455 0.77217 0.81381 1.19439 1.22167 1.18435 0.87136 0.89144 0.92040 0.90566 0.90018 0.88166 0.85359 0.85683 0.84168 0.95644 0.89846 0.89845 0.93129 0.94496 0.92976 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 13.90 67.78 0.94 -2.46 16 2 C -0.17 -3.06 5.63 -16.49 -0.09 -3.15 16 3 C -0.11 -1.44 9.68 71.24 0.69 -0.75 16 4 C 0.14 2.61 6.07 85.63 0.52 3.13 16 5 N -0.46 -11.90 2.79 -518.90 -1.45 -13.35 16 6 C 0.20 4.82 7.59 137.64 1.04 5.87 16 7 C -0.05 -0.66 5.54 -11.54 -0.06 -0.73 16 8 H 0.15 1.27 6.69 -2.38 -0.02 1.26 16 9 C -0.10 -0.88 9.82 30.59 0.30 -0.58 16 10 C -0.05 -0.54 5.92 -12.60 -0.07 -0.62 16 11 H 0.16 1.71 8.14 -2.39 -0.02 1.69 16 12 C 0.27 3.88 15.56 89.45 1.39 5.27 16 13 N -0.47 -9.80 18.54 20.01 0.37 -9.43 16 14 N -0.31 -9.78 11.79 -49.53 -0.58 -10.36 16 15 N -0.36 -14.16 9.81 -58.01 -0.57 -14.73 16 16 C 0.37 13.09 6.10 260.11 1.59 14.67 16 17 N -0.45 -17.49 4.66 -710.98 -3.31 -20.80 16 18 C 0.05 1.56 8.94 127.69 1.14 2.70 16 19 C 0.21 9.97 1.30 44.17 0.06 10.03 16 20 H 0.00 0.12 7.00 -2.39 -0.02 0.11 16 21 C -0.14 -6.24 8.49 71.98 0.61 -5.63 16 22 C -0.51 -27.46 8.57 25.60 0.22 -27.24 16 23 H 0.06 3.56 6.66 -2.91 -0.02 3.54 16 24 C 0.03 1.75 5.45 84.65 0.46 2.22 16 25 N -0.94 -56.11 13.96 21.45 0.30 -55.81 16 26 Si 0.93 45.38 24.37 68.60 1.67 47.05 16 27 H -0.27 -12.60 6.87 99.48 0.68 -11.91 16 28 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 29 H -0.26 -12.57 6.53 99.48 0.65 -11.92 16 30 H 0.11 2.18 8.05 -2.91 -0.02 2.15 16 31 H 0.09 2.43 8.00 -2.91 -0.02 2.41 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 34 H 0.08 0.68 6.98 -2.39 -0.02 0.66 16 35 H 0.10 1.95 6.16 -2.38 -0.01 1.93 16 36 H 0.13 1.48 7.85 -2.39 -0.02 1.46 16 37 H 0.12 1.43 7.92 -2.38 -0.02 1.41 16 38 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.02 0.92 8.12 -2.39 -0.02 0.90 16 40 H 0.08 2.21 6.28 -2.39 -0.02 2.19 16 41 H 0.08 3.11 6.49 -2.39 -0.02 3.09 16 42 H 0.05 2.23 6.09 -2.39 -0.01 2.22 16 43 H 0.04 1.73 3.27 -2.39 -0.01 1.72 16 44 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -72.30 369.53 6.10 -66.21 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 0.93 Total: 8.50 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 8.74 Total: 2.73 kcal Atomic # 7 Polarization: -119.24 SS G_CDS: -5.24 Total: -124.49 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.67 Total: 47.05 kcal Total: -72.30 6.10 -66.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342279752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.918 kcal (2) G-P(sol) polarization free energy of solvation -72.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds