Wall clock time and date at job start Tue Mar 31 2020 12:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86793 * 119.99748 * 2 1 4 4 H 1.48500 * 109.47518 * 270.00246 * 3 2 1 5 5 H 1.48499 * 109.47352 * 30.00323 * 3 2 1 6 6 H 1.48500 * 109.47260 * 150.00082 * 3 2 1 7 7 C 1.38652 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99863 * 0.02562 * 7 2 1 9 9 O 1.34828 * 119.99996 * 179.97438 * 7 2 1 10 10 C 1.35758 * 116.99813 * 185.05641 * 9 7 2 11 11 C 1.38894 * 120.06827 * 354.45691 * 10 9 7 12 12 C 1.38079 * 119.93070 * 179.97438 * 11 10 9 13 13 C 1.38323 * 120.06560 * 359.97438 * 12 11 10 14 14 C 1.38278 * 120.14237 * 0.02562 * 13 12 11 15 15 C 1.50696 * 119.96570 * 179.97438 * 14 13 12 16 16 N 1.46895 * 109.47641 * 90.00270 * 15 14 13 17 17 C 1.46900 * 111.00384 * 180.02562 * 16 15 14 18 18 H 1.08995 * 110.06362 * 41.80239 * 17 16 15 19 19 C 1.54439 * 110.08263 * 163.31692 * 17 16 15 20 20 C 1.54941 * 104.22015 * 142.72739 * 19 17 16 21 21 C 1.55044 * 102.82874 * 322.41293 * 20 19 17 22 22 C 1.53244 * 110.07915 * 280.23017 * 17 16 15 23 23 C 1.53643 * 110.58249 * 120.25160 * 22 17 16 24 24 C 1.55036 * 104.03382 * 215.82404 * 23 22 17 25 25 C 1.54948 * 102.82807 * 37.40158 * 24 23 22 26 26 C 1.53242 * 110.83065 * 1.42861 * 22 17 16 27 27 C 1.38126 * 120.06596 * 0.02562 * 14 13 12 28 28 H 0.96994 * 120.00447 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.03984 * 359.96447 * 11 10 9 30 30 H 1.07997 * 119.96659 * 180.02562 * 12 11 10 31 31 H 1.08008 * 119.92919 * 179.74505 * 13 12 11 32 32 H 1.09009 * 109.46612 * 209.99815 * 15 14 13 33 33 H 1.08995 * 109.47190 * 329.99647 * 15 14 13 34 34 H 1.00899 * 111.00207 * 56.04014 * 16 15 14 35 35 H 1.09006 * 110.48104 * 261.41193 * 19 17 16 36 36 H 1.09003 * 110.48468 * 24.03617 * 19 17 16 37 37 H 1.09001 * 110.74291 * 80.74175 * 20 19 17 38 38 H 1.09000 * 110.74224 * 204.08303 * 20 19 17 39 39 H 1.08990 * 110.51916 * 156.04040 * 21 20 19 40 40 H 1.09006 * 110.51490 * 278.76919 * 21 20 19 41 41 H 1.09008 * 110.51566 * 334.46445 * 23 22 17 42 42 H 1.08996 * 110.51260 * 97.18467 * 23 22 17 43 43 H 1.08996 * 110.74029 * 279.06711 * 24 23 22 44 44 H 1.08993 * 110.89499 * 155.80312 * 24 23 22 45 45 H 1.09000 * 110.47747 * 203.73201 * 25 24 23 46 46 H 1.08998 * 110.59684 * 81.14969 * 25 24 23 47 47 H 1.08995 * 110.07801 * 239.86195 * 26 22 17 48 48 H 1.09000 * 110.08260 * 1.42686 * 26 22 17 49 49 H 1.07997 * 120.03149 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4969 2.0465 -1.4000 5 1 1.4469 2.6526 0.7001 6 1 3.5470 1.4402 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 1.4689 -2.1360 -0.0014 9 8 3.3571 -1.2007 -0.0011 10 6 3.9734 -2.4056 -0.1082 11 6 3.2234 -3.5745 -0.0950 12 6 3.8531 -4.7984 -0.2047 13 6 5.2294 -4.8610 -0.3281 14 6 5.9789 -3.6991 -0.3415 15 6 7.4781 -3.7720 -0.4756 16 7 7.8451 -3.7340 -1.8974 17 6 9.3026 -3.8039 -2.0671 18 1 9.7243 -4.5377 -1.3802 19 6 9.6495 -4.1807 -3.5241 20 6 10.9156 -3.3461 -3.8420 21 6 10.6364 -2.0061 -3.1138 22 6 9.9280 -2.4274 -1.8171 23 6 10.9328 -2.4932 -0.6567 24 6 10.7662 -1.1300 0.0627 25 6 9.2409 -0.8745 -0.0333 26 6 8.8551 -1.4031 -1.4322 27 6 5.3549 -2.4718 -0.2311 28 1 -0.4850 0.8400 -0.0004 29 1 2.1487 -3.5262 0.0011 30 1 3.2704 -5.7076 -0.1949 31 1 5.7201 -5.8198 -0.4096 32 1 7.9305 -2.9243 0.0392 33 1 7.8378 -4.7004 -0.0322 34 1 7.4674 -2.9132 -2.3466 35 1 9.8657 -5.2463 -3.6013 36 1 8.8340 -3.9067 -4.1934 37 1 11.8064 -3.8268 -3.4376 38 1 11.0144 -3.1884 -4.9160 39 1 11.5706 -1.4917 -2.8889 40 1 9.9855 -1.3724 -3.7162 41 1 10.6850 -3.3136 0.0171 42 1 11.9484 -2.6031 -1.0366 43 1 11.3218 -0.3492 -0.4565 44 1 11.0812 -1.1988 1.1039 45 1 9.0273 0.1916 0.0438 46 1 8.7102 -1.4261 0.7426 47 1 8.8440 -0.5845 -2.1518 48 1 7.8767 -1.8822 -1.3944 49 1 5.9408 -1.5646 -0.2421 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347666172.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:30 Heat of formation + Delta-G solvation = -1.275301 kcal Electronic energy + Delta-G solvation = -26976.918147 eV Core-core repulsion = 23483.087699 eV Total energy + Delta-G solvation = -3493.830448 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.79127 -39.13095 -36.93733 -35.43888 -34.55706 -32.37598 -30.66284 -29.32950 -28.90811 -28.77853 -27.12890 -25.29175 -24.34131 -22.83736 -21.71356 -21.45337 -20.38638 -20.11198 -18.49612 -17.69506 -17.27754 -16.68281 -16.00376 -15.21314 -15.08754 -14.85424 -14.64884 -14.26282 -13.94005 -13.81786 -13.77575 -13.63840 -13.11158 -12.75772 -12.62005 -12.43951 -12.26045 -12.06171 -11.68001 -11.56763 -11.22614 -11.21004 -11.18000 -11.15127 -10.95669 -10.77778 -10.76407 -10.73791 -10.57419 -10.57147 -10.52863 -10.37093 -10.12914 -9.37763 -8.86757 -8.34015 -8.07665 -7.35152 -6.40516 -4.07469 2.03923 2.30410 3.21596 3.25240 3.39557 4.11910 4.23896 4.29147 4.33571 4.45163 4.65791 4.80833 4.86574 4.91630 4.98921 5.10796 5.16702 5.25029 5.27416 5.36141 5.36574 5.42178 5.46889 5.55525 5.55966 5.65667 5.69823 5.73965 5.77522 5.80415 5.83687 5.89367 5.91666 5.98020 6.00236 6.05840 6.14510 6.16260 6.19174 6.24578 6.27913 6.29773 6.54868 6.80054 7.10378 7.12584 7.27070 7.33615 7.45391 7.62417 7.81725 8.05351 8.95013 9.57769 10.67414 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015037 B = 0.003586 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.653962 B = 7806.706654 C = 8796.624263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.389 4.389 8 H 0.106 0.894 9 O -0.220 6.220 10 C 0.159 3.841 11 C -0.218 4.218 12 C -0.078 4.078 13 C -0.181 4.181 14 C -0.049 4.049 15 C 0.093 3.907 16 N -0.677 5.677 17 C 0.094 3.906 18 H 0.080 0.920 19 C -0.113 4.113 20 C -0.126 4.126 21 C -0.109 4.109 22 C -0.096 4.096 23 C -0.109 4.109 24 C -0.124 4.124 25 C -0.126 4.126 26 C -0.146 4.146 27 C -0.187 4.187 28 H 0.279 0.721 29 H 0.132 0.868 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.349 0.651 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.090 0.910 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.301 -5.721 -3.675 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.123 0.877 9 O -0.125 6.125 10 C 0.107 3.893 11 C -0.237 4.237 12 C -0.097 4.097 13 C -0.200 4.200 14 C -0.049 4.049 15 C -0.034 4.034 16 N -0.311 5.311 17 C -0.017 4.017 18 H 0.098 0.902 19 C -0.151 4.151 20 C -0.164 4.164 21 C -0.147 4.147 22 C -0.097 4.097 23 C -0.147 4.147 24 C -0.161 4.161 25 C -0.163 4.163 26 C -0.184 4.184 27 C -0.206 4.206 28 H 0.089 0.911 29 H 0.149 0.851 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.173 0.827 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.107 0.893 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 22.057 -6.026 -3.749 23.170 hybrid contribution 0.259 1.578 0.287 1.625 sum 22.316 -4.447 -3.462 23.017 Atomic orbital electron populations 1.69643 1.05548 1.28425 1.48318 1.24446 0.95000 0.98742 0.95768 0.86198 0.80323 0.81555 0.78920 1.19917 1.20813 1.18423 1.20758 0.76928 0.96599 1.52182 0.87670 1.83569 1.22558 1.25671 1.80705 1.19036 0.91554 0.85533 0.93164 1.21307 1.01113 0.91992 1.09335 1.20806 0.94321 0.96692 0.97854 1.20497 0.93583 0.96950 1.08976 1.19200 0.93857 0.92570 0.99289 1.21034 0.92045 1.01391 0.88965 1.60720 1.09755 1.47268 1.13317 1.22260 0.87564 0.94640 0.97205 0.90167 1.22397 0.97239 0.99543 0.95918 1.22530 0.97970 0.96006 0.99922 1.22441 0.99886 0.97078 0.95281 1.22009 0.95722 0.96519 0.95496 1.22452 0.98425 0.97492 0.96299 1.22525 0.96443 0.97159 0.99998 1.22438 0.95706 1.00987 0.97185 1.22818 1.00096 0.98332 0.97148 1.20025 0.91965 0.97083 1.11574 0.91094 0.85077 0.87248 0.87461 0.93163 0.90828 0.82705 0.91606 0.90915 0.91758 0.91714 0.91869 0.91585 0.91720 0.91781 0.91843 0.91907 0.91777 0.91318 0.91666 0.89258 0.86962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.56 13.96 55.48 0.77 -24.79 16 2 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 3 Si 0.90 21.73 28.62 -169.99 -4.86 16.86 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.39 -11.00 9.95 30.89 0.31 -10.69 16 8 H 0.11 3.04 5.44 -52.49 -0.29 2.76 16 9 O -0.22 -5.79 8.59 0.03 0.00 -5.79 16 10 C 0.16 3.65 6.65 -39.11 -0.26 3.39 16 11 C -0.22 -4.73 9.17 -39.40 -0.36 -5.09 16 12 C -0.08 -1.44 10.04 -39.61 -0.40 -1.83 16 13 C -0.18 -3.06 9.70 -39.54 -0.38 -3.44 16 14 C -0.05 -0.81 5.39 -104.65 -0.56 -1.38 16 15 C 0.09 1.23 4.74 -4.98 -0.02 1.21 16 16 N -0.68 -8.32 6.04 -107.06 -0.65 -8.97 16 17 C 0.09 0.95 2.84 -66.83 -0.19 0.76 16 18 H 0.08 0.82 7.14 -51.93 -0.37 0.45 16 19 C -0.11 -1.05 6.55 -24.95 -0.16 -1.21 16 20 C -0.13 -1.01 6.91 -24.63 -0.17 -1.18 16 21 C -0.11 -0.94 5.74 -25.32 -0.15 -1.09 16 22 C -0.10 -0.90 0.74 -153.59 -0.11 -1.01 16 23 C -0.11 -0.96 5.75 -25.32 -0.15 -1.10 16 24 C -0.12 -1.12 6.91 -24.63 -0.17 -1.29 16 25 C -0.13 -1.34 6.52 -24.94 -0.16 -1.50 16 26 C -0.15 -1.59 4.85 -25.85 -0.13 -1.71 16 27 C -0.19 -3.63 9.50 -39.39 -0.37 -4.00 16 28 H 0.28 7.47 8.31 -40.82 -0.34 7.14 16 29 H 0.13 2.99 5.64 -52.49 -0.30 2.70 16 30 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 31 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 32 H 0.05 0.64 4.22 -51.92 -0.22 0.42 16 33 H 0.07 0.92 8.03 -51.93 -0.42 0.50 16 34 H 0.35 4.55 6.39 -39.29 -0.25 4.30 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.74 8.05 -51.93 -0.42 0.33 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.51 7.64 -51.93 -0.40 0.12 16 40 H 0.07 0.60 7.49 -51.93 -0.39 0.21 16 41 H 0.06 0.58 7.49 -51.92 -0.39 0.19 16 42 H 0.06 0.51 7.64 -51.93 -0.40 0.11 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.79 6.61 -51.93 -0.34 0.44 16 47 H 0.06 0.71 7.33 -51.93 -0.38 0.33 16 48 H 0.09 1.10 2.71 -51.93 -0.14 0.96 16 49 H 0.11 2.06 7.62 -52.49 -0.40 1.66 16 LS Contribution 368.70 15.07 5.56 5.56 Total: -1.00 -28.46 368.70 -10.33 -38.79 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -7.61 Total: 7.82 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: -3.54 Total: -29.48 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.13 Total: -33.76 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: 0.00 Total: -5.79 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.86 Total: 16.86 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.46 -10.33 -38.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347666172.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.516 kcal (2) G-P(sol) polarization free energy of solvation -28.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds