Wall clock time and date at job start Tue Mar 31 2020 12:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86793 * 119.99748 * 2 1 4 4 H 1.48500 * 109.47518 * 270.00246 * 3 2 1 5 5 H 1.48499 * 109.47352 * 30.00323 * 3 2 1 6 6 H 1.48500 * 109.47260 * 150.00082 * 3 2 1 7 7 C 1.38652 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99863 * 0.02562 * 7 2 1 9 9 O 1.34828 * 119.99996 * 179.97438 * 7 2 1 10 10 C 1.35758 * 116.99813 * 185.05641 * 9 7 2 11 11 C 1.38894 * 120.06827 * 354.45691 * 10 9 7 12 12 C 1.38079 * 119.93070 * 179.97438 * 11 10 9 13 13 C 1.38323 * 120.06560 * 359.97438 * 12 11 10 14 14 C 1.38278 * 120.14237 * 0.02562 * 13 12 11 15 15 C 1.50696 * 119.96570 * 179.97438 * 14 13 12 16 16 N 1.46895 * 109.47641 * 90.00270 * 15 14 13 17 17 C 1.46900 * 111.00384 * 180.02562 * 16 15 14 18 18 H 1.08995 * 110.06362 * 41.80239 * 17 16 15 19 19 C 1.54439 * 110.08263 * 163.31692 * 17 16 15 20 20 C 1.54941 * 104.22015 * 142.72739 * 19 17 16 21 21 C 1.55044 * 102.82874 * 322.41293 * 20 19 17 22 22 C 1.53244 * 110.07915 * 280.23017 * 17 16 15 23 23 C 1.53643 * 110.58249 * 120.25160 * 22 17 16 24 24 C 1.55036 * 104.03382 * 215.82404 * 23 22 17 25 25 C 1.54948 * 102.82807 * 37.40158 * 24 23 22 26 26 C 1.53242 * 110.83065 * 1.42861 * 22 17 16 27 27 C 1.38126 * 120.06596 * 0.02562 * 14 13 12 28 28 H 0.96994 * 120.00447 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.03984 * 359.96447 * 11 10 9 30 30 H 1.07997 * 119.96659 * 180.02562 * 12 11 10 31 31 H 1.08008 * 119.92919 * 179.74505 * 13 12 11 32 32 H 1.09009 * 109.46612 * 209.99815 * 15 14 13 33 33 H 1.08995 * 109.47190 * 329.99647 * 15 14 13 34 34 H 1.00899 * 111.00207 * 56.04014 * 16 15 14 35 35 H 1.09006 * 110.48104 * 261.41193 * 19 17 16 36 36 H 1.09003 * 110.48468 * 24.03617 * 19 17 16 37 37 H 1.09001 * 110.74291 * 80.74175 * 20 19 17 38 38 H 1.09000 * 110.74224 * 204.08303 * 20 19 17 39 39 H 1.08990 * 110.51916 * 156.04040 * 21 20 19 40 40 H 1.09006 * 110.51490 * 278.76919 * 21 20 19 41 41 H 1.09008 * 110.51566 * 334.46445 * 23 22 17 42 42 H 1.08996 * 110.51260 * 97.18467 * 23 22 17 43 43 H 1.08996 * 110.74029 * 279.06711 * 24 23 22 44 44 H 1.08993 * 110.89499 * 155.80312 * 24 23 22 45 45 H 1.09000 * 110.47747 * 203.73201 * 25 24 23 46 46 H 1.08998 * 110.59684 * 81.14969 * 25 24 23 47 47 H 1.08995 * 110.07801 * 239.86195 * 26 22 17 48 48 H 1.09000 * 110.08260 * 1.42686 * 26 22 17 49 49 H 1.07997 * 120.03149 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4969 2.0465 -1.4000 5 1 1.4469 2.6526 0.7001 6 1 3.5470 1.4402 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 1.4689 -2.1360 -0.0014 9 8 3.3571 -1.2007 -0.0011 10 6 3.9734 -2.4056 -0.1082 11 6 3.2234 -3.5745 -0.0950 12 6 3.8531 -4.7984 -0.2047 13 6 5.2294 -4.8610 -0.3281 14 6 5.9789 -3.6991 -0.3415 15 6 7.4781 -3.7720 -0.4756 16 7 7.8451 -3.7340 -1.8974 17 6 9.3026 -3.8039 -2.0671 18 1 9.7243 -4.5377 -1.3802 19 6 9.6495 -4.1807 -3.5241 20 6 10.9156 -3.3461 -3.8420 21 6 10.6364 -2.0061 -3.1138 22 6 9.9280 -2.4274 -1.8171 23 6 10.9328 -2.4932 -0.6567 24 6 10.7662 -1.1300 0.0627 25 6 9.2409 -0.8745 -0.0333 26 6 8.8551 -1.4031 -1.4322 27 6 5.3549 -2.4718 -0.2311 28 1 -0.4850 0.8400 -0.0004 29 1 2.1487 -3.5262 0.0011 30 1 3.2704 -5.7076 -0.1949 31 1 5.7201 -5.8198 -0.4096 32 1 7.9305 -2.9243 0.0392 33 1 7.8378 -4.7004 -0.0322 34 1 7.4674 -2.9132 -2.3466 35 1 9.8657 -5.2463 -3.6013 36 1 8.8340 -3.9067 -4.1934 37 1 11.8064 -3.8268 -3.4376 38 1 11.0144 -3.1884 -4.9160 39 1 11.5706 -1.4917 -2.8889 40 1 9.9855 -1.3724 -3.7162 41 1 10.6850 -3.3136 0.0171 42 1 11.9484 -2.6031 -1.0366 43 1 11.3218 -0.3492 -0.4565 44 1 11.0812 -1.1988 1.1039 45 1 9.0273 0.1916 0.0438 46 1 8.7102 -1.4261 0.7426 47 1 8.8440 -0.5845 -2.1518 48 1 7.8767 -1.8822 -1.3944 49 1 5.9408 -1.5646 -0.2421 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347666172.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:29 Heat of formation + Delta-G solvation = -15.710017 kcal Electronic energy + Delta-G solvation = -26977.544084 eV Core-core repulsion = 23483.087699 eV Total energy + Delta-G solvation = -3494.456384 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.64542 -40.78434 -38.55094 -36.25435 -35.59246 -34.45415 -32.01057 -30.93527 -29.68114 -29.51649 -28.14500 -27.22262 -25.51400 -23.69991 -23.13790 -22.49332 -21.78261 -20.83432 -19.66592 -19.30130 -18.85409 -17.70629 -16.88918 -16.79366 -16.48893 -15.93137 -15.84033 -15.55627 -15.52173 -15.29134 -14.70247 -14.60351 -14.33143 -14.29489 -14.15601 -13.73309 -13.45636 -13.10685 -13.02296 -12.74075 -12.64094 -12.44161 -12.33241 -12.03115 -11.98666 -11.90907 -11.87652 -11.78752 -11.67219 -11.50812 -11.34889 -11.27745 -11.22893 -11.13835 -10.91728 -9.73995 -9.16798 -9.05422 -8.50697 -6.23333 0.49329 0.70636 1.29256 1.33465 1.49649 2.26544 2.73940 2.96784 3.14814 3.41090 3.54642 3.60528 3.74527 3.95762 4.06836 4.12708 4.18083 4.24978 4.33091 4.43025 4.46839 4.52998 4.61088 4.61690 4.63176 4.67049 4.69778 4.75546 4.80929 4.86591 4.94746 4.96587 5.03757 5.06358 5.11536 5.14476 5.21728 5.26594 5.27915 5.31023 5.40021 5.41782 5.46799 5.50483 5.55057 5.68113 5.76507 5.78015 5.91733 6.17588 6.27356 6.43189 6.83895 7.58846 8.61203 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015037 B = 0.003586 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.653962 B = 7806.706654 C = 8796.624263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.264 1.264 7 C -0.399 4.399 8 H 0.080 0.920 9 O -0.246 6.246 10 C 0.121 3.879 11 C -0.239 4.239 12 C -0.077 4.077 13 C -0.162 4.162 14 C -0.038 4.038 15 C 0.100 3.900 16 N -0.681 5.681 17 C 0.095 3.905 18 H 0.087 0.913 19 C -0.112 4.112 20 C -0.119 4.119 21 C -0.109 4.109 22 C -0.090 4.090 23 C -0.105 4.105 24 C -0.119 4.119 25 C -0.129 4.129 26 C -0.147 4.147 27 C -0.183 4.183 28 H 0.284 0.716 29 H 0.106 0.894 30 H 0.139 0.861 31 H 0.144 0.856 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.343 0.657 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.059 0.941 48 H 0.074 0.926 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.076 -6.935 -4.051 27.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.475 4.475 8 H 0.098 0.902 9 O -0.154 6.154 10 C 0.072 3.928 11 C -0.258 4.258 12 C -0.095 4.095 13 C -0.181 4.181 14 C -0.039 4.039 15 C -0.027 4.027 16 N -0.315 5.315 17 C -0.015 4.015 18 H 0.105 0.895 19 C -0.150 4.150 20 C -0.157 4.157 21 C -0.147 4.147 22 C -0.092 4.092 23 C -0.143 4.143 24 C -0.157 4.157 25 C -0.167 4.167 26 C -0.185 4.185 27 C -0.203 4.203 28 H 0.094 0.906 29 H 0.124 0.876 30 H 0.157 0.843 31 H 0.162 0.838 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.166 0.834 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.092 0.908 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 25.863 -7.280 -4.129 27.184 hybrid contribution -0.749 1.684 0.368 1.880 sum 25.115 -5.596 -3.761 26.004 Atomic orbital electron populations 1.69725 1.06883 1.29561 1.50346 1.25251 0.95850 1.02051 0.95590 0.85241 0.78796 0.77558 0.79266 1.19090 1.19129 1.18810 1.20704 0.78161 0.96090 1.52557 0.90222 1.83511 1.21162 1.27420 1.83312 1.19578 0.93029 0.85085 0.95114 1.21321 1.00158 0.93406 1.10915 1.21131 0.95440 0.96259 0.96662 1.20988 0.92929 0.98532 1.05655 1.19629 0.96041 0.91364 0.96832 1.21012 0.89161 1.02610 0.89967 1.60741 1.11394 1.47030 1.12315 1.22333 0.86085 0.95150 0.97968 0.89472 1.22384 0.97472 1.00174 0.94980 1.22504 0.97681 0.95208 1.00335 1.22433 0.99973 0.97471 0.94776 1.21950 0.95413 0.95585 0.96254 1.22443 0.98865 0.97160 0.95836 1.22504 0.94976 0.97607 1.00604 1.22448 0.97094 1.00410 0.96737 1.22798 0.99903 0.98578 0.97213 1.20256 0.90478 0.98796 1.10783 0.90587 0.87575 0.84333 0.83831 0.92631 0.89005 0.83381 0.90956 0.92208 0.90543 0.91120 0.90999 0.92485 0.91623 0.90422 0.91372 0.91275 0.92478 0.92238 0.92193 0.90774 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.88 13.96 21.61 0.30 -55.58 16 2 C 0.01 0.63 5.49 84.83 0.47 1.10 16 3 Si 0.97 46.03 28.62 68.60 1.96 48.00 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.40 -23.88 9.95 67.92 0.68 -23.21 16 8 H 0.08 5.01 5.44 -2.91 -0.02 4.99 16 9 O -0.25 -13.59 8.59 -22.81 -0.20 -13.79 16 10 C 0.12 5.73 6.65 22.57 0.15 5.88 16 11 C -0.24 -10.70 9.17 22.39 0.21 -10.49 16 12 C -0.08 -2.70 10.04 22.25 0.22 -2.48 16 13 C -0.16 -4.97 9.70 22.30 0.22 -4.75 16 14 C -0.04 -1.19 5.39 -19.88 -0.11 -1.29 16 15 C 0.10 2.35 4.74 85.56 0.41 2.75 16 16 N -0.68 -15.01 6.04 -492.64 -2.97 -17.98 16 17 C 0.09 1.63 2.84 45.49 0.13 1.76 16 18 H 0.09 1.43 7.14 -2.39 -0.02 1.41 16 19 C -0.11 -1.77 6.55 31.75 0.21 -1.56 16 20 C -0.12 -1.54 6.91 31.96 0.22 -1.31 16 21 C -0.11 -1.60 5.74 31.51 0.18 -1.42 16 22 C -0.09 -1.46 0.74 -51.59 -0.04 -1.50 16 23 C -0.11 -1.51 5.75 31.51 0.18 -1.33 16 24 C -0.12 -1.87 6.91 31.96 0.22 -1.65 16 25 C -0.13 -2.59 6.52 31.75 0.21 -2.38 16 26 C -0.15 -2.99 4.85 31.17 0.15 -2.84 16 27 C -0.18 -7.09 9.50 22.39 0.21 -6.87 16 28 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 29 H 0.11 5.24 5.64 -2.91 -0.02 5.22 16 30 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 31 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 32 H 0.06 1.28 4.22 -2.38 -0.01 1.27 16 33 H 0.09 1.88 8.03 -2.39 -0.02 1.86 16 34 H 0.34 8.42 6.39 -89.69 -0.57 7.84 16 35 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.06 1.11 8.05 -2.39 -0.02 1.09 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.07 0.95 7.64 -2.39 -0.02 0.93 16 40 H 0.06 0.94 7.49 -2.38 -0.02 0.93 16 41 H 0.07 0.94 7.49 -2.38 -0.02 0.93 16 42 H 0.08 0.93 7.64 -2.39 -0.02 0.91 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.06 1.29 6.61 -2.39 -0.02 1.27 16 47 H 0.06 1.26 7.33 -2.39 -0.02 1.25 16 48 H 0.07 1.74 2.71 -2.39 -0.01 1.74 16 49 H 0.12 4.37 7.62 -2.91 -0.02 4.35 16 Total: -1.00 -64.44 368.70 3.39 -61.05 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: 0.38 Total: 29.89 kcal Atomic # 6 Polarization: -55.50 SS G_CDS: 3.91 Total: -51.59 kcal Atomic # 7 Polarization: -70.89 SS G_CDS: -2.67 Total: -73.56 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.20 Total: -13.79 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.96 Total: 48.00 kcal Total: -64.44 3.39 -61.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347666172.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.341 kcal (2) G-P(sol) polarization free energy of solvation -64.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds