Wall clock time and date at job start Tue Mar 31 2020 12:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00098 * 2 1 4 4 H 1.48506 * 109.46923 * 264.79062 * 3 2 1 5 5 H 1.48492 * 109.47402 * 24.79075 * 3 2 1 6 6 H 1.48501 * 109.46981 * 144.79701 * 3 2 1 7 7 C 1.37878 * 119.99440 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00322 * 353.54769 * 7 2 1 9 9 C 1.50701 * 119.99473 * 173.54286 * 7 2 1 10 10 H 1.08998 * 109.47159 * 34.96910 * 9 7 2 11 11 C 1.50707 * 109.46883 * 154.96224 * 9 7 2 12 12 O 1.21284 * 119.99830 * 119.99581 * 11 9 7 13 13 N 1.34780 * 120.00024 * 300.00245 * 11 9 7 14 14 C 1.46497 * 119.99842 * 179.97438 * 13 11 9 15 15 C 1.52997 * 109.46903 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.47150 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47589 * 295.00421 * 16 15 14 18 18 C 1.52996 * 109.47172 * 179.97438 * 17 16 15 19 19 C 1.52996 * 109.47300 * 60.00206 * 18 17 16 20 20 C 1.53001 * 109.46883 * 299.99606 * 19 18 17 21 21 C 1.52999 * 109.47157 * 60.00273 * 20 19 18 22 22 C 1.50693 * 109.47068 * 274.95991 * 9 7 2 23 23 C 1.38240 * 119.99800 * 126.36872 * 22 9 7 24 24 C 1.38238 * 119.99890 * 179.97438 * 23 22 9 25 25 C 1.38233 * 120.00041 * 359.95685 * 24 23 22 26 26 C 1.38238 * 120.00173 * 359.97438 * 25 24 23 27 27 C 1.38229 * 119.99812 * 0.06393 * 26 25 24 28 28 H 0.97007 * 119.99477 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99742 * 359.97438 * 13 11 9 30 30 H 1.09000 * 109.47618 * 299.99996 * 14 13 11 31 31 H 1.09004 * 109.47101 * 59.99740 * 14 13 11 32 32 H 1.09001 * 109.47310 * 300.00010 * 15 14 13 33 33 H 1.08996 * 109.47373 * 60.00380 * 15 14 13 34 34 H 1.09006 * 109.46928 * 55.00427 * 16 15 14 35 35 H 1.09000 * 109.46371 * 300.00251 * 17 16 15 36 36 H 1.08999 * 109.46994 * 59.99388 * 17 16 15 37 37 H 1.08998 * 109.47097 * 299.99325 * 18 17 16 38 38 H 1.09003 * 109.46581 * 179.97438 * 18 17 16 39 39 H 1.09000 * 109.47377 * 180.02562 * 19 18 17 40 40 H 1.08992 * 109.47472 * 59.99214 * 19 18 17 41 41 H 1.08998 * 109.47365 * 300.00336 * 20 19 18 42 42 H 1.08998 * 109.46995 * 179.97438 * 20 19 18 43 43 H 1.09002 * 109.47387 * 179.97438 * 21 20 19 44 44 H 1.09000 * 109.47643 * 59.99592 * 21 20 19 45 45 H 1.08000 * 119.99918 * 359.97438 * 23 22 9 46 46 H 1.07999 * 119.99494 * 179.97438 * 24 23 22 47 47 H 1.08007 * 119.99818 * 179.71686 * 25 24 23 48 48 H 1.07998 * 120.00024 * 179.97438 * 26 25 24 49 49 H 1.08006 * 120.00106 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6067 1.9828 -1.3944 5 1 1.3960 2.6819 0.5870 6 1 3.4874 1.4743 0.8071 7 6 2.0044 -1.1941 0.0005 8 1 1.4695 -2.1264 0.1061 9 6 3.5043 -1.1983 -0.1462 10 1 3.9209 -0.3252 0.3559 11 6 4.0663 -2.4510 0.4753 12 8 4.6983 -3.2333 -0.2025 13 7 3.8665 -2.7019 1.7844 14 6 4.4123 -3.9198 2.3884 15 6 4.0456 -3.9611 3.8732 16 6 4.6151 -5.2335 4.5040 17 6 3.9367 -6.4573 3.8852 18 6 4.5067 -7.7295 4.5156 19 6 4.2487 -7.7114 6.0235 20 6 4.9272 -6.4876 6.6423 21 6 4.3572 -5.2153 6.0120 22 6 3.8660 -1.1573 -1.6085 23 6 4.7265 -0.1838 -2.0806 24 6 5.0588 -0.1465 -3.4220 25 6 4.5312 -1.0831 -4.2910 26 6 3.6718 -2.0575 -3.8187 27 6 3.3389 -2.0943 -2.4776 28 1 -0.4850 0.8401 -0.0004 29 1 3.3612 -2.0760 2.3265 30 1 3.9953 -4.7928 1.8864 31 1 5.4971 -3.9233 2.2821 32 1 4.4630 -3.0882 4.3750 33 1 2.9609 -3.9574 3.9798 34 1 5.6885 -5.2812 4.3199 35 1 2.8634 -6.4095 4.0693 36 1 4.1208 -6.4705 2.8110 37 1 5.5799 -7.7771 4.3310 38 1 4.0230 -8.6014 4.0750 39 1 4.6552 -8.6175 6.4727 40 1 3.1756 -7.6638 6.2080 41 1 6.0004 -6.5350 6.4578 42 1 4.7430 -6.4744 7.7165 43 1 4.8402 -4.3434 6.4531 44 1 3.2840 -5.1677 6.1964 45 1 5.1392 0.5475 -1.4015 46 1 5.7307 0.6143 -3.7908 47 1 4.7872 -1.0511 -5.3398 48 1 3.2593 -2.7889 -4.4978 49 1 2.6672 -2.8553 -2.1086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355961057.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:22 Heat of formation + Delta-G solvation = -55.113276 kcal Electronic energy + Delta-G solvation = -26153.199540 eV Core-core repulsion = 22657.034502 eV Total energy + Delta-G solvation = -3496.165038 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.42104 -38.87079 -37.81046 -34.88805 -33.62248 -32.26306 -31.44625 -30.89156 -30.08692 -28.45685 -27.18007 -23.99869 -23.19611 -22.52130 -21.79900 -21.00434 -20.75009 -19.87242 -19.12925 -17.10065 -16.26680 -16.07879 -15.72559 -15.23920 -15.06503 -14.55417 -14.38258 -14.21834 -14.09591 -13.94681 -13.69267 -13.21959 -12.89838 -12.64754 -12.62960 -12.45851 -12.20643 -12.08432 -12.02668 -11.79083 -11.52664 -11.27906 -11.21334 -11.10905 -10.97113 -10.85826 -10.54697 -10.42016 -10.29190 -10.16392 -10.03016 -9.90682 -9.52157 -8.88535 -8.71245 -8.36450 -8.08335 -7.77420 -6.28683 -4.32738 2.19714 2.26401 3.18411 3.24460 3.29119 3.61579 3.94988 4.24974 4.54564 4.56887 4.63333 4.70355 4.96875 5.02343 5.03304 5.25548 5.29921 5.36832 5.38642 5.41432 5.51313 5.57882 5.59316 5.64553 5.75109 5.76047 5.82702 5.87138 5.95364 5.98111 6.00002 6.01951 6.09912 6.11878 6.19145 6.26094 6.32947 6.35968 6.38778 6.43826 6.51990 6.78659 6.89799 7.15296 7.21096 7.29933 7.32098 7.64667 7.84765 8.21206 8.32335 8.71077 9.14220 9.29975 10.82355 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015372 B = 0.003178 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.037131 B = 8809.192828 C = 9830.326237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.087 3.913 3 Si 0.864 3.136 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.513 4.513 8 H 0.082 0.918 9 C 0.021 3.979 10 H 0.067 0.933 11 C 0.536 3.464 12 O -0.562 6.562 13 N -0.730 5.730 14 C 0.121 3.879 15 C -0.128 4.128 16 C -0.082 4.082 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.114 4.114 22 C -0.028 4.028 23 C -0.137 4.137 24 C -0.130 4.130 25 C -0.143 4.143 26 C -0.130 4.130 27 C -0.070 4.070 28 H 0.268 0.732 29 H 0.405 0.595 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.108 0.892 48 H 0.111 0.889 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.682 -8.336 9.080 15.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.118 4.118 3 Si 0.691 3.309 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.550 4.550 8 H 0.100 0.900 9 C 0.000 4.000 10 H 0.085 0.915 11 C 0.325 3.675 12 O -0.440 6.440 13 N -0.382 5.382 14 C -0.003 4.003 15 C -0.166 4.166 16 C -0.101 4.101 17 C -0.157 4.157 18 C -0.157 4.157 19 C -0.157 4.157 20 C -0.157 4.157 21 C -0.152 4.152 22 C -0.029 4.029 23 C -0.155 4.155 24 C -0.148 4.148 25 C -0.161 4.161 26 C -0.148 4.148 27 C -0.088 4.088 28 H 0.078 0.922 29 H 0.240 0.760 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.126 0.874 48 H 0.129 0.871 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.944 -8.783 8.601 15.203 hybrid contribution -0.001 1.303 0.205 1.319 sum 8.943 -7.480 8.806 14.611 Atomic orbital electron populations 1.69877 1.06216 1.27455 1.48294 1.24936 0.94658 0.98769 0.93389 0.86999 0.80206 0.83932 0.79797 1.18975 1.21170 1.18828 1.20528 0.86823 0.95354 1.52323 0.90015 1.18513 0.98752 0.93228 0.89543 0.91501 1.20996 0.77411 0.88116 0.81007 1.90593 1.41686 1.49955 1.61805 1.45908 1.57346 1.24198 1.10775 1.21255 0.98325 0.88442 0.92269 1.21850 1.01914 0.97951 0.94840 1.21074 1.00222 0.94163 0.94595 1.21678 1.00154 0.93756 1.00111 1.21534 1.01019 0.97875 0.95289 1.21542 1.00713 0.97698 0.95788 1.21527 1.00050 0.94838 0.99240 1.21583 1.01242 0.97435 0.94919 1.20090 0.92534 0.93388 0.96912 1.20969 0.99305 0.99653 0.95554 1.20870 1.00978 0.99194 0.93746 1.20857 0.99828 0.96773 0.98659 1.21034 0.99079 0.98882 0.95831 1.20848 0.97715 0.97958 0.92272 0.92169 0.76042 0.91951 0.92513 0.91383 0.91021 0.91113 0.91816 0.91394 0.92123 0.92181 0.92432 0.92067 0.92137 0.92297 0.92038 0.91867 0.87507 0.87313 0.87352 0.87132 0.86448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.09 13.96 55.43 0.77 -24.31 16 2 C 0.09 2.32 5.47 -17.82 -0.10 2.23 16 3 Si 0.86 20.07 26.63 -169.99 -4.53 15.54 16 4 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.26 -5.70 6.31 56.52 0.36 -5.34 16 7 C -0.51 -13.19 8.01 -34.44 -0.28 -13.47 16 8 H 0.08 2.31 8.05 -52.49 -0.42 1.89 16 9 C 0.02 0.48 1.89 -94.07 -0.18 0.31 16 10 H 0.07 1.50 5.20 -51.93 -0.27 1.23 16 11 C 0.54 11.70 7.04 -10.98 -0.08 11.62 16 12 O -0.56 -13.47 15.43 5.55 0.09 -13.38 16 13 N -0.73 -13.14 5.46 -60.29 -0.33 -13.47 16 14 C 0.12 1.80 5.43 -4.05 -0.02 1.78 16 15 C -0.13 -1.46 4.80 -26.73 -0.13 -1.59 16 16 C -0.08 -0.81 2.19 -90.62 -0.20 -1.01 16 17 C -0.12 -1.21 4.96 -26.73 -0.13 -1.35 16 18 C -0.12 -1.06 5.92 -26.74 -0.16 -1.22 16 19 C -0.12 -0.97 5.92 -26.73 -0.16 -1.12 16 20 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 21 C -0.11 -1.00 5.21 -26.73 -0.14 -1.14 16 22 C -0.03 -0.65 3.89 -104.62 -0.41 -1.05 16 23 C -0.14 -2.86 9.18 -39.58 -0.36 -3.22 16 24 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 25 C -0.14 -2.59 10.05 -39.58 -0.40 -2.99 16 26 C -0.13 -2.54 10.05 -39.58 -0.40 -2.94 16 27 C -0.07 -1.57 8.32 -39.58 -0.33 -1.90 16 28 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.40 6.85 8.36 -40.82 -0.34 6.51 16 30 H 0.06 0.99 6.56 -51.93 -0.34 0.65 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.76 6.56 -51.93 -0.34 0.42 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.11 2.07 7.96 -52.49 -0.42 1.65 16 46 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 47 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 48 H 0.11 1.85 8.06 -52.49 -0.42 1.42 16 49 H 0.12 2.74 7.89 -52.48 -0.41 2.32 16 LS Contribution 385.18 15.07 5.80 5.80 Total: -1.00 -29.85 385.18 -10.70 -40.55 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -8.49 Total: 10.26 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -4.02 Total: -20.99 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.44 Total: -37.78 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.09 Total: -13.38 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.53 Total: 15.54 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.85 -10.70 -40.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355961057.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.564 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds