Wall clock time and date at job start Tue Mar 31 2020 12:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00098 * 2 1 4 4 H 1.48506 * 109.46923 * 264.79062 * 3 2 1 5 5 H 1.48492 * 109.47402 * 24.79075 * 3 2 1 6 6 H 1.48501 * 109.46981 * 144.79701 * 3 2 1 7 7 C 1.37878 * 119.99440 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00322 * 353.54769 * 7 2 1 9 9 C 1.50701 * 119.99473 * 173.54286 * 7 2 1 10 10 H 1.08998 * 109.47159 * 34.96910 * 9 7 2 11 11 C 1.50707 * 109.46883 * 154.96224 * 9 7 2 12 12 O 1.21284 * 119.99830 * 119.99581 * 11 9 7 13 13 N 1.34780 * 120.00024 * 300.00245 * 11 9 7 14 14 C 1.46497 * 119.99842 * 179.97438 * 13 11 9 15 15 C 1.52997 * 109.46903 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.47150 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47589 * 295.00421 * 16 15 14 18 18 C 1.52996 * 109.47172 * 179.97438 * 17 16 15 19 19 C 1.52996 * 109.47300 * 60.00206 * 18 17 16 20 20 C 1.53001 * 109.46883 * 299.99606 * 19 18 17 21 21 C 1.52999 * 109.47157 * 60.00273 * 20 19 18 22 22 C 1.50693 * 109.47068 * 274.95991 * 9 7 2 23 23 C 1.38240 * 119.99800 * 126.36872 * 22 9 7 24 24 C 1.38238 * 119.99890 * 179.97438 * 23 22 9 25 25 C 1.38233 * 120.00041 * 359.95685 * 24 23 22 26 26 C 1.38238 * 120.00173 * 359.97438 * 25 24 23 27 27 C 1.38229 * 119.99812 * 0.06393 * 26 25 24 28 28 H 0.97007 * 119.99477 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99742 * 359.97438 * 13 11 9 30 30 H 1.09000 * 109.47618 * 299.99996 * 14 13 11 31 31 H 1.09004 * 109.47101 * 59.99740 * 14 13 11 32 32 H 1.09001 * 109.47310 * 300.00010 * 15 14 13 33 33 H 1.08996 * 109.47373 * 60.00380 * 15 14 13 34 34 H 1.09006 * 109.46928 * 55.00427 * 16 15 14 35 35 H 1.09000 * 109.46371 * 300.00251 * 17 16 15 36 36 H 1.08999 * 109.46994 * 59.99388 * 17 16 15 37 37 H 1.08998 * 109.47097 * 299.99325 * 18 17 16 38 38 H 1.09003 * 109.46581 * 179.97438 * 18 17 16 39 39 H 1.09000 * 109.47377 * 180.02562 * 19 18 17 40 40 H 1.08992 * 109.47472 * 59.99214 * 19 18 17 41 41 H 1.08998 * 109.47365 * 300.00336 * 20 19 18 42 42 H 1.08998 * 109.46995 * 179.97438 * 20 19 18 43 43 H 1.09002 * 109.47387 * 179.97438 * 21 20 19 44 44 H 1.09000 * 109.47643 * 59.99592 * 21 20 19 45 45 H 1.08000 * 119.99918 * 359.97438 * 23 22 9 46 46 H 1.07999 * 119.99494 * 179.97438 * 24 23 22 47 47 H 1.08007 * 119.99818 * 179.71686 * 25 24 23 48 48 H 1.07998 * 120.00024 * 179.97438 * 26 25 24 49 49 H 1.08006 * 120.00106 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6067 1.9828 -1.3944 5 1 1.3960 2.6819 0.5870 6 1 3.4874 1.4743 0.8071 7 6 2.0044 -1.1941 0.0005 8 1 1.4695 -2.1264 0.1061 9 6 3.5043 -1.1983 -0.1462 10 1 3.9209 -0.3252 0.3559 11 6 4.0663 -2.4510 0.4753 12 8 4.6983 -3.2333 -0.2025 13 7 3.8665 -2.7019 1.7844 14 6 4.4123 -3.9198 2.3884 15 6 4.0456 -3.9611 3.8732 16 6 4.6151 -5.2335 4.5040 17 6 3.9367 -6.4573 3.8852 18 6 4.5067 -7.7295 4.5156 19 6 4.2487 -7.7114 6.0235 20 6 4.9272 -6.4876 6.6423 21 6 4.3572 -5.2153 6.0120 22 6 3.8660 -1.1573 -1.6085 23 6 4.7265 -0.1838 -2.0806 24 6 5.0588 -0.1465 -3.4220 25 6 4.5312 -1.0831 -4.2910 26 6 3.6718 -2.0575 -3.8187 27 6 3.3389 -2.0943 -2.4776 28 1 -0.4850 0.8401 -0.0004 29 1 3.3612 -2.0760 2.3265 30 1 3.9953 -4.7928 1.8864 31 1 5.4971 -3.9233 2.2821 32 1 4.4630 -3.0882 4.3750 33 1 2.9609 -3.9574 3.9798 34 1 5.6885 -5.2812 4.3199 35 1 2.8634 -6.4095 4.0693 36 1 4.1208 -6.4705 2.8110 37 1 5.5799 -7.7771 4.3310 38 1 4.0230 -8.6014 4.0750 39 1 4.6552 -8.6175 6.4727 40 1 3.1756 -7.6638 6.2080 41 1 6.0004 -6.5350 6.4578 42 1 4.7430 -6.4744 7.7165 43 1 4.8402 -4.3434 6.4531 44 1 3.2840 -5.1677 6.1964 45 1 5.1392 0.5475 -1.4015 46 1 5.7307 0.6143 -3.7908 47 1 4.7872 -1.0511 -5.3398 48 1 3.2593 -2.7889 -4.4978 49 1 2.6672 -2.8553 -2.1086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355961057.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:21 Heat of formation + Delta-G solvation = -70.493302 kcal Electronic energy + Delta-G solvation = -26153.866468 eV Core-core repulsion = 22657.034502 eV Total energy + Delta-G solvation = -3496.831966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.00997 -39.84477 -39.29062 -36.19029 -35.52205 -33.52735 -33.17168 -31.63375 -31.62056 -29.86568 -28.55882 -25.64736 -24.44412 -23.42470 -23.30625 -22.40417 -21.81931 -20.85880 -20.51714 -19.08788 -17.88587 -17.68156 -16.95248 -16.52465 -16.23904 -16.16974 -15.76816 -15.40092 -15.16791 -14.98625 -14.84950 -14.78381 -14.39887 -14.25886 -14.09764 -13.71904 -13.56375 -13.46110 -12.99072 -12.95235 -12.86665 -12.73068 -12.54842 -12.18084 -12.03396 -12.00795 -11.96808 -11.71981 -11.62676 -11.41647 -11.30921 -10.98703 -10.85879 -10.81602 -10.52530 -9.90897 -9.64590 -9.37775 -8.34738 -6.42714 0.63627 0.70166 1.33809 1.39494 1.43828 1.86343 2.31228 2.48366 2.96241 3.15755 3.73187 3.77338 3.88679 4.08244 4.09725 4.19437 4.20208 4.28776 4.34184 4.38695 4.42192 4.47098 4.52320 4.59460 4.61546 4.67460 4.70785 4.73629 4.80854 4.82484 4.90561 5.01480 5.09352 5.13000 5.19780 5.22065 5.29006 5.31413 5.34643 5.35323 5.40715 5.42894 5.50697 5.63873 5.66618 5.69186 5.73479 5.95052 6.19723 6.29805 6.59730 6.71503 7.22952 7.45768 8.79806 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015372 B = 0.003178 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.037131 B = 8809.192828 C = 9830.326237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.039 3.961 3 Si 0.919 3.081 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.235 1.235 7 C -0.502 4.502 8 H 0.039 0.961 9 C 0.024 3.976 10 H 0.076 0.924 11 C 0.530 3.470 12 O -0.588 6.588 13 N -0.720 5.720 14 C 0.122 3.878 15 C -0.117 4.117 16 C -0.076 4.076 17 C -0.121 4.121 18 C -0.118 4.118 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.112 4.112 22 C -0.057 4.057 23 C -0.153 4.153 24 C -0.126 4.126 25 C -0.137 4.137 26 C -0.135 4.135 27 C -0.103 4.103 28 H 0.270 0.730 29 H 0.410 0.590 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.122 0.878 46 H 0.149 0.851 47 H 0.151 0.849 48 H 0.134 0.866 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.029 -7.212 9.191 16.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.161 4.161 3 Si 0.743 3.257 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.159 1.159 7 C -0.540 4.540 8 H 0.057 0.943 9 C 0.003 3.997 10 H 0.094 0.906 11 C 0.319 3.681 12 O -0.469 6.469 13 N -0.371 5.371 14 C -0.002 4.002 15 C -0.155 4.155 16 C -0.096 4.096 17 C -0.158 4.158 18 C -0.156 4.156 19 C -0.156 4.156 20 C -0.155 4.155 21 C -0.149 4.149 22 C -0.058 4.058 23 C -0.171 4.171 24 C -0.144 4.144 25 C -0.154 4.154 26 C -0.153 4.153 27 C -0.121 4.121 28 H 0.079 0.921 29 H 0.246 0.754 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.140 0.860 46 H 0.167 0.833 47 H 0.168 0.832 48 H 0.152 0.848 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.303 -7.676 8.752 16.225 hybrid contribution -0.739 0.838 0.090 1.121 sum 10.564 -6.838 8.841 15.379 Atomic orbital electron populations 1.70008 1.08014 1.28383 1.50437 1.25655 0.95224 1.02179 0.93063 0.86109 0.80028 0.79489 0.80082 1.19023 1.20970 1.15879 1.20458 0.88450 0.93649 1.51443 0.94303 1.18441 0.96543 0.94079 0.90662 0.90626 1.20919 0.77402 0.87762 0.82047 1.90563 1.43113 1.50552 1.62681 1.45912 1.56429 1.25051 1.09748 1.21409 0.98063 0.86469 0.94226 1.21799 1.01826 0.99542 0.92347 1.21040 1.00082 0.92923 0.95506 1.21670 0.99979 0.94925 0.99273 1.21524 1.01006 0.97028 0.96023 1.21541 1.00721 0.98402 0.94968 1.21526 1.00094 0.94077 0.99788 1.21564 1.01281 0.98402 0.93692 1.20129 0.94422 0.94837 0.96423 1.21255 0.99199 0.99390 0.97262 1.21370 1.00550 0.99724 0.92730 1.21351 0.98072 0.95270 1.00738 1.21360 0.99164 0.99942 0.94808 1.20829 0.98858 0.98253 0.94175 0.92110 0.75414 0.93336 0.92413 0.90032 0.91419 0.90874 0.92416 0.93090 0.91914 0.92048 0.91299 0.92290 0.91833 0.91171 0.91256 0.92131 0.86034 0.83345 0.83162 0.84825 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.70 13.96 21.45 0.30 -54.40 16 2 C 0.04 2.13 5.47 84.65 0.46 2.59 16 3 Si 0.92 40.93 26.63 68.60 1.83 42.75 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.24 -9.32 6.31 99.48 0.63 -8.69 16 7 C -0.50 -26.92 8.01 25.60 0.21 -26.72 16 8 H 0.04 2.35 8.05 -2.91 -0.02 2.33 16 9 C 0.02 1.13 1.89 -13.03 -0.02 1.10 16 10 H 0.08 3.33 5.20 -2.39 -0.01 3.32 16 11 C 0.53 23.83 7.04 87.66 0.62 24.45 16 12 O -0.59 -29.12 15.43 -3.04 -0.05 -29.17 16 13 N -0.72 -26.53 5.46 -463.05 -2.53 -29.06 16 14 C 0.12 3.69 5.43 86.38 0.47 4.16 16 15 C -0.12 -2.64 4.80 30.59 0.15 -2.50 16 16 C -0.08 -1.46 2.19 -10.79 -0.02 -1.49 16 17 C -0.12 -2.48 4.96 30.59 0.15 -2.32 16 18 C -0.12 -2.02 5.92 30.59 0.18 -1.84 16 19 C -0.12 -1.74 5.92 30.59 0.18 -1.56 16 20 C -0.12 -1.64 5.92 30.59 0.18 -1.46 16 21 C -0.11 -1.79 5.21 30.60 0.16 -1.63 16 22 C -0.06 -2.63 3.89 -19.87 -0.08 -2.70 16 23 C -0.15 -6.09 9.18 22.27 0.20 -5.89 16 24 C -0.13 -4.23 10.05 22.27 0.22 -4.01 16 25 C -0.14 -4.46 10.05 22.27 0.22 -4.24 16 26 C -0.13 -5.11 10.05 22.27 0.22 -4.89 16 27 C -0.10 -4.75 8.32 22.27 0.19 -4.56 16 28 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 29 H 0.41 14.09 8.36 -92.71 -0.77 13.31 16 30 H 0.05 1.62 6.56 -2.39 -0.02 1.60 16 31 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 34 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.05 1.20 6.56 -2.39 -0.02 1.18 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.12 4.36 7.96 -2.91 -0.02 4.34 16 46 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 47 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 48 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 49 H 0.09 4.43 7.89 -2.91 -0.02 4.40 16 Total: -1.00 -67.04 385.18 3.30 -63.74 By element: Atomic # 1 Polarization: 39.56 SS G_CDS: 0.06 Total: 39.62 kcal Atomic # 6 Polarization: -37.18 SS G_CDS: 3.69 Total: -33.49 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -2.23 Total: -83.45 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.05 Total: -29.17 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 1.83 Total: 42.75 kcal Total: -67.04 3.30 -63.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355961057.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.755 kcal (2) G-P(sol) polarization free energy of solvation -67.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds