Wall clock time and date at job start Tue Mar 31 2020 10:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46922 * 2 1 4 4 N 1.46498 * 109.47089 * 176.67041 * 3 2 1 5 5 C 1.37611 * 127.15734 * 83.80558 * 4 3 2 6 6 C 1.47771 * 126.47283 * 359.97438 * 5 4 3 7 7 C 1.39584 * 119.75313 * 180.02562 * 6 5 4 8 8 C 1.38318 * 119.04918 * 179.97438 * 7 6 5 9 9 C 1.38847 * 118.53435 * 0.02562 * 8 7 6 10 10 C 1.38257 * 119.41142 * 0.02562 * 9 8 7 11 11 N 1.31747 * 120.91891 * 359.73927 * 10 9 8 12 12 N 1.31293 * 107.05893 * 179.97438 * 5 4 3 13 13 N 1.28517 * 109.91282 * 359.97438 * 12 5 4 14 14 C 1.31481 * 110.06946 * 359.76197 * 13 12 5 15 15 N 1.38289 * 126.36560 * 180.23658 * 14 13 12 16 16 C 1.46897 * 111.00269 * 240.99892 * 15 14 13 17 17 C 1.46900 * 110.99911 * 4.95431 * 15 14 13 18 18 H 1.08998 * 109.46872 * 54.99890 * 17 15 14 19 19 C 1.52998 * 109.47006 * 294.99752 * 17 15 14 20 20 C 1.50705 * 109.46957 * 174.99688 * 17 15 14 21 21 H 1.07996 * 119.99697 * 0.02562 * 20 17 15 22 22 C 1.37872 * 119.99650 * 179.97438 * 20 17 15 23 23 N 1.31514 * 120.00370 * 0.02562 * 22 20 17 24 24 Si 1.86803 * 119.99716 * 180.02562 * 22 20 17 25 25 H 1.48503 * 109.47246 * 60.00360 * 24 22 20 26 26 H 1.48502 * 109.47119 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47391 * 300.00240 * 24 22 20 28 28 H 1.08997 * 109.47220 * 59.99564 * 1 2 3 29 29 H 1.08994 * 109.47233 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47202 * 299.99706 * 1 2 3 31 31 H 1.08997 * 109.47220 * 120.00436 * 2 1 3 32 32 H 1.08999 * 109.46840 * 240.00931 * 2 1 3 33 33 H 1.09002 * 109.47513 * 296.67178 * 3 2 1 34 34 H 1.09007 * 109.46995 * 56.67138 * 3 2 1 35 35 H 1.08003 * 120.47425 * 359.97438 * 7 6 5 36 36 H 1.08002 * 120.73020 * 180.02562 * 8 7 6 37 37 H 1.07997 * 120.28940 * 180.02562 * 9 8 7 38 38 H 1.08000 * 119.53899 * 179.97438 * 10 9 8 39 39 H 1.09001 * 109.46911 * 52.45951 * 16 15 14 40 40 H 1.08998 * 109.47712 * 172.45965 * 16 15 14 41 41 H 1.09003 * 109.47073 * 292.46366 * 16 15 14 42 42 H 1.08998 * 109.47418 * 299.99804 * 19 17 15 43 43 H 1.09000 * 109.46917 * 60.00433 * 19 17 15 44 44 H 1.08998 * 109.46810 * 180.02562 * 19 17 15 45 45 H 0.96996 * 120.00144 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5027 1.4433 0.0802 5 6 4.3923 1.3044 -0.9605 6 6 4.0536 1.1234 -2.3874 7 6 5.0743 0.9955 -3.3309 8 6 4.7407 0.8262 -4.6625 9 6 3.3970 0.7904 -5.0102 10 6 2.4368 0.9243 -4.0246 11 7 2.7798 1.0800 -2.7621 12 7 5.5989 1.3630 -0.4462 13 7 5.5249 1.5272 0.8263 14 6 4.2660 1.5885 1.2008 15 7 3.8022 1.7639 2.4918 16 6 2.9883 0.6181 2.9190 17 6 4.9139 1.9965 3.4235 18 1 5.5110 2.8386 3.0736 19 6 5.7902 0.7444 3.4945 20 6 4.3654 2.3042 4.7930 21 1 3.2978 2.3245 4.9551 22 6 5.2265 2.5588 5.8392 23 7 6.5266 2.5336 5.6419 24 14 4.5467 2.9396 7.5369 25 1 3.7331 1.7922 8.0132 26 1 5.6705 3.1748 8.4788 27 1 3.6961 4.1549 7.4685 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.7262 1.9389 -0.9183 34 1 1.6287 1.9733 0.8587 35 1 6.1097 1.0284 -3.0254 36 1 5.5086 0.7241 -5.4151 37 1 3.1045 0.6590 -6.0415 38 1 1.3910 0.8972 -4.2928 39 1 3.5465 -0.3042 2.7580 40 1 2.7481 0.7174 3.9775 41 1 2.0662 0.5907 2.3382 42 1 5.1931 -0.0977 3.8444 43 1 6.1869 0.5219 2.5040 44 1 6.6148 0.9168 4.1862 45 1 7.1324 2.7131 6.3778 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001401489078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:20 Heat of formation + Delta-G solvation = 116.929148 kcal Electronic energy + Delta-G solvation = -26939.127763 eV Core-core repulsion = 23379.175452 eV Total energy + Delta-G solvation = -3559.952311 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.97855 -40.92629 -39.13564 -37.23411 -34.88537 -33.75679 -33.34248 -33.10767 -30.82166 -30.14188 -27.93159 -27.29445 -26.80400 -25.09970 -24.48869 -23.32528 -23.02098 -21.78994 -21.05571 -18.63139 -18.34365 -17.63830 -17.32528 -17.14071 -17.01000 -16.58829 -16.29317 -16.08952 -15.42570 -15.19186 -14.92143 -14.76750 -14.51606 -14.26650 -14.00078 -13.63838 -13.39040 -13.27146 -12.98970 -12.90780 -12.80100 -12.68263 -12.61040 -12.43809 -12.24626 -12.16284 -12.00937 -11.70988 -11.52025 -11.20261 -11.09627 -10.89003 -10.82135 -10.51265 -10.49571 -9.96776 -8.96068 -8.12289 -6.27946 -0.34078 0.33077 0.99108 1.24194 1.45595 1.48090 1.55737 1.79362 2.41729 2.70711 2.90584 3.00992 3.17237 3.55607 3.70048 3.89708 3.96895 3.99671 4.11732 4.15116 4.23756 4.28041 4.39344 4.42833 4.48624 4.57404 4.62669 4.71179 4.82868 4.86667 4.91648 4.94057 5.07784 5.12705 5.15406 5.17704 5.22444 5.25981 5.35333 5.41292 5.57915 5.58602 5.72987 5.81314 6.01607 6.19526 6.53039 6.80424 6.86157 7.40696 7.69903 8.94326 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.021879 B = 0.003611 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.457738 B = 7751.649869 C = 8742.326899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.111 3.889 4 N -0.462 5.462 5 C 0.201 3.799 6 C 0.177 3.823 7 C -0.142 4.142 8 C -0.068 4.068 9 C -0.149 4.149 10 C 0.099 3.901 11 N -0.490 5.490 12 N -0.298 5.298 13 N -0.355 5.355 14 C 0.375 3.625 15 N -0.454 5.454 16 C 0.034 3.966 17 C 0.241 3.759 18 H 0.004 0.996 19 C -0.155 4.155 20 C -0.528 4.528 21 H 0.073 0.927 22 C 0.013 3.987 23 N -0.918 5.918 24 Si 0.971 3.029 25 H -0.264 1.264 26 H -0.287 1.287 27 H -0.270 1.270 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.135 0.865 36 H 0.172 0.828 37 H 0.179 0.821 38 H 0.195 0.805 39 H 0.022 0.978 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.028 0.972 43 H 0.038 0.962 44 H 0.064 0.936 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.992 -6.303 -21.865 26.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C -0.009 4.009 4 N -0.156 5.156 5 C -0.065 4.065 6 C 0.041 3.959 7 C -0.164 4.164 8 C -0.094 4.094 9 C -0.169 4.169 10 C -0.060 4.060 11 N -0.201 5.201 12 N -0.140 5.140 13 N -0.202 5.202 14 C 0.018 3.982 15 N -0.177 5.177 16 C -0.112 4.112 17 C 0.135 3.865 18 H 0.022 0.978 19 C -0.214 4.214 20 C -0.566 4.566 21 H 0.091 0.909 22 C -0.186 4.186 23 N -0.557 5.557 24 Si 0.795 3.205 25 H -0.189 1.189 26 H -0.213 1.213 27 H -0.195 1.195 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.136 0.864 34 H 0.111 0.889 35 H 0.153 0.847 36 H 0.189 0.811 37 H 0.197 0.803 38 H 0.212 0.788 39 H 0.041 0.959 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.047 0.953 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.313 -5.767 -20.943 25.477 hybrid contribution 0.321 -0.207 0.692 0.790 sum -12.991 -5.974 -20.251 24.791 Atomic orbital electron populations 1.21611 0.91689 1.03077 1.03061 1.21837 0.98807 0.94006 1.01894 1.22317 0.72797 1.00371 1.05459 1.46412 1.09734 1.54740 1.04671 1.22663 0.85841 1.07900 0.90147 1.17999 0.90844 1.00494 0.86600 1.22109 1.00258 0.99881 0.94149 1.21961 0.98460 0.94229 0.94716 1.22726 0.92821 0.98439 1.02945 1.23378 1.02353 0.93947 0.86317 1.67522 1.17468 1.13260 1.21894 1.74142 1.19576 1.18078 1.02178 1.74809 1.15846 1.24802 1.04707 1.23129 0.86938 0.99149 0.88976 1.59087 1.24382 1.38134 0.96093 1.22615 0.96187 0.88744 1.03692 1.18970 0.85223 0.93406 0.88902 0.97803 1.22223 1.01475 0.97767 0.99979 1.21285 0.93752 1.48737 0.92808 0.90928 1.25793 0.94928 0.94827 1.03084 1.70076 1.03034 1.49271 1.33323 0.85424 0.77709 0.79070 0.78287 1.18869 1.21286 1.19521 0.90897 0.91189 0.91957 0.93025 0.91716 0.86444 0.88926 0.84716 0.81050 0.80316 0.78840 0.95905 0.88873 0.89166 0.95302 0.94345 0.91751 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.91 71.98 0.71 -1.39 16 2 C -0.13 -2.88 5.75 30.59 0.18 -2.70 16 3 C 0.11 3.04 4.55 86.38 0.39 3.43 16 4 N -0.46 -17.06 2.83 -516.89 -1.46 -18.52 16 5 C 0.20 7.52 7.82 136.17 1.07 8.58 16 6 C 0.18 5.01 6.75 41.84 0.28 5.30 16 7 C -0.14 -3.28 9.74 22.61 0.22 -3.06 16 8 C -0.07 -0.93 10.16 22.43 0.23 -0.70 16 9 C -0.15 -1.47 10.11 22.42 0.23 -1.24 16 10 C 0.10 1.32 11.17 84.71 0.95 2.27 16 11 N -0.49 -10.94 7.38 -185.08 -1.37 -12.31 16 12 N -0.30 -13.34 11.86 -50.81 -0.60 -13.94 16 13 N -0.36 -17.86 9.13 -58.11 -0.53 -18.39 16 14 C 0.37 17.00 6.69 260.19 1.74 18.74 16 15 N -0.45 -20.95 4.72 -711.17 -3.36 -24.31 16 16 C 0.03 1.30 7.90 127.69 1.01 2.31 16 17 C 0.24 13.16 2.04 44.17 0.09 13.25 16 18 H 0.00 0.26 8.01 -2.39 -0.02 0.24 16 19 C -0.15 -8.42 8.27 71.98 0.60 -7.82 16 20 C -0.53 -29.10 7.78 25.60 0.20 -28.91 16 21 H 0.07 3.79 6.84 -2.91 -0.02 3.77 16 22 C 0.01 0.74 5.30 84.65 0.45 1.18 16 23 N -0.92 -54.64 11.32 21.45 0.24 -54.40 16 24 Si 0.97 43.39 29.54 68.60 2.03 45.41 16 25 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 26 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 27 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.05 1.33 6.18 -2.39 -0.01 1.31 16 32 H 0.06 1.56 7.57 -2.39 -0.02 1.54 16 33 H 0.12 2.90 6.65 -2.39 -0.02 2.88 16 34 H 0.09 2.54 7.35 -2.38 -0.02 2.52 16 35 H 0.13 3.39 7.86 -2.91 -0.02 3.37 16 36 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 37 H 0.18 0.30 8.06 -2.91 -0.02 0.27 16 38 H 0.19 1.13 8.06 -2.91 -0.02 1.10 16 39 H 0.02 0.89 6.90 -2.39 -0.02 0.87 16 40 H 0.09 3.65 6.25 -2.39 -0.01 3.64 16 41 H 0.09 2.77 4.44 -2.39 -0.01 2.76 16 42 H 0.03 1.45 6.65 -2.39 -0.02 1.43 16 43 H 0.04 2.09 5.69 -2.39 -0.01 2.07 16 44 H 0.06 3.82 6.07 -2.39 -0.01 3.80 16 45 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -75.45 355.43 4.29 -71.16 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 1.01 Total: 16.06 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 8.33 Total: 9.24 kcal Atomic # 7 Polarization: -134.79 SS G_CDS: -7.08 Total: -141.87 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -75.45 4.29 -71.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401489078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.094 kcal (2) G-P(sol) polarization free energy of solvation -75.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds