Wall clock time and date at job start Tue Mar 31 2020 10:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46797 * 2 1 4 4 C 1.50700 * 109.47226 * 240.00110 * 2 1 3 5 5 H 1.07998 * 119.99735 * 239.99939 * 4 2 1 6 6 C 1.37878 * 119.99898 * 59.99836 * 4 2 1 7 7 N 1.31507 * 119.99890 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99690 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47445 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46794 * 120.00228 * 8 6 4 11 11 H 1.48497 * 109.47332 * 239.99943 * 8 6 4 12 12 N 1.46900 * 109.46983 * 119.99828 * 2 1 3 13 13 C 1.46898 * 110.99901 * 176.04624 * 12 2 1 14 14 C 1.38489 * 111.00495 * 300.00414 * 12 2 1 15 15 N 1.31297 * 126.35053 * 359.95369 * 14 12 2 16 16 N 1.28501 * 110.15295 * 179.79953 * 15 14 12 17 17 C 1.31473 * 109.93087 * 0.39598 * 16 15 14 18 18 C 1.47228 * 126.50786 * 179.87981 * 17 16 15 19 19 C 1.36525 * 126.08815 * 344.19387 * 18 17 16 20 20 C 1.40342 * 107.32221 * 179.69900 * 19 18 17 21 21 C 1.35096 * 107.75153 * 0.25874 * 20 19 18 22 22 N 1.36345 * 108.53946 * 0.02562 * 21 20 19 23 23 H 0.97002 * 125.71884 * 180.02562 * 22 21 20 24 24 N 1.36609 * 126.35607 * 180.02562 * 14 12 2 25 25 C 1.46504 * 127.18823 * 359.95928 * 24 14 12 26 26 H 1.09001 * 115.54844 * 109.96598 * 25 24 14 27 27 C 1.53004 * 117.49609 * 324.30920 * 25 24 14 28 28 C 1.52999 * 117.50092 * 255.68334 * 25 24 14 29 29 H 1.09001 * 117.49902 * 359.97438 * 28 25 24 30 30 C 1.52996 * 117.49921 * 214.97243 * 28 25 24 31 31 H 1.08997 * 109.47046 * 60.00010 * 1 2 3 32 32 H 1.08999 * 109.46758 * 179.97438 * 1 2 3 33 33 H 1.08990 * 109.47308 * 299.99675 * 1 2 3 34 34 H 0.97009 * 119.99955 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.47347 * 183.95925 * 13 12 2 36 36 H 1.09005 * 109.47227 * 303.95571 * 13 12 2 37 37 H 1.08997 * 109.46891 * 63.95555 * 13 12 2 38 38 H 1.07997 * 126.34075 * 359.95992 * 19 18 17 39 39 H 1.07998 * 126.12077 * 180.28428 * 20 19 18 40 40 H 1.08000 * 125.73493 * 179.97438 * 21 20 19 41 41 H 1.09003 * 117.49854 * 359.97438 * 27 25 24 42 42 H 1.08995 * 117.50075 * 145.01675 * 27 25 24 43 43 H 1.09003 * 109.46584 * 59.99822 * 30 28 25 44 44 H 1.08996 * 109.47556 * 179.97438 * 30 28 25 45 45 H 1.08997 * 109.47333 * 300.00696 * 30 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3226 -1.1195 -4.0079 9 1 3.1476 -2.2863 -3.6038 10 1 1.1679 -1.5865 -4.8165 11 1 3.1473 -0.1857 -4.8160 12 7 2.0197 -0.6925 1.1995 13 6 3.4851 -0.7945 1.1871 14 6 1.5756 -0.0646 2.3512 15 7 0.8190 1.0068 2.4112 16 7 0.5917 1.3203 3.6364 17 6 1.1979 0.4709 4.4362 18 6 1.1833 0.4907 5.9083 19 6 0.8032 1.5400 6.6946 20 6 0.9356 1.1306 8.0305 21 6 1.3931 -0.1405 8.0282 22 7 1.5525 -0.5416 6.7349 23 1 1.8688 -1.4122 6.4469 24 7 1.8446 -0.4442 3.6356 25 6 2.6521 -1.5865 4.0707 26 1 3.6087 -1.3380 4.5306 27 6 2.5834 -2.8619 3.2283 28 6 1.9103 -2.8148 4.6016 29 1 0.8214 -2.7729 4.6275 30 6 2.5677 -3.6007 5.7378 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8899 34 1 0.7095 1.1619 -3.4844 35 1 3.8164 -1.3722 2.0500 36 1 3.8070 -1.2915 0.2719 37 1 3.9192 0.2044 1.2301 38 1 0.4597 2.5050 6.3521 39 1 0.7115 1.7252 8.9038 40 1 1.5989 -0.7383 8.9038 41 1 1.9371 -2.8512 2.3506 42 1 3.4945 -3.4527 3.1344 43 1 2.7002 -2.9487 6.6012 44 1 1.9321 -4.4424 6.0127 45 1 3.5390 -3.9705 5.4093 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460433551.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:08 Heat of formation + Delta-G solvation = 180.148658 kcal Electronic energy + Delta-G solvation = -27252.923340 eV Core-core repulsion = 23695.712433 eV Total energy + Delta-G solvation = -3557.210907 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.55794 -40.86130 -38.38936 -37.11583 -33.27346 -32.74551 -31.11378 -30.73821 -29.27408 -28.75708 -27.83638 -25.47351 -24.49758 -23.58097 -22.53186 -21.36867 -21.10850 -20.50673 -20.18744 -19.12444 -18.19647 -16.90599 -16.42224 -15.87196 -15.26332 -14.90500 -14.69159 -14.40986 -14.16423 -14.10044 -13.89512 -13.52597 -13.21072 -13.17250 -12.55160 -12.51626 -12.47500 -12.23389 -12.04556 -11.83229 -11.43009 -11.10619 -11.03432 -10.89916 -10.79079 -10.48221 -10.36605 -10.22440 -10.08481 -9.88108 -9.73224 -9.50210 -8.97354 -8.81343 -8.52657 -8.12183 -7.18575 -6.06912 -4.15300 1.48633 2.38365 2.50940 2.96370 3.04968 3.14041 3.25238 3.33076 3.35238 3.57195 4.10926 4.23626 4.28750 4.40441 4.51789 4.62608 4.75339 4.95716 5.14303 5.16108 5.24763 5.35006 5.39099 5.45303 5.51931 5.58837 5.72882 5.74116 5.89542 5.95396 5.97364 6.11312 6.26027 6.32408 6.42804 6.77001 6.88806 6.97804 6.98757 7.15442 7.34543 7.39418 7.43292 7.65686 7.70838 7.94652 8.26327 8.40181 8.85988 9.27982 9.49453 10.99144 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.021269 B = 0.003894 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.147372 B = 7188.603233 C = 8190.971571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.228 3.772 3 H 0.022 0.978 4 C -0.518 4.518 5 H 0.065 0.935 6 C 0.065 3.935 7 N -0.881 5.881 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.449 5.449 13 C 0.030 3.970 14 C 0.397 3.603 15 N -0.309 5.309 16 N -0.257 5.257 17 C 0.212 3.788 18 C 0.093 3.907 19 C -0.142 4.142 20 C -0.199 4.199 21 C -0.006 4.006 22 N -0.559 5.559 23 H 0.412 0.588 24 N -0.470 5.470 25 C 0.049 3.951 26 H 0.131 0.869 27 C -0.139 4.139 28 C -0.169 4.169 29 H 0.113 0.887 30 C -0.125 4.125 31 H 0.087 0.913 32 H 0.022 0.978 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.055 0.945 36 H 0.099 0.901 37 H 0.028 0.972 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.167 0.833 41 H 0.129 0.871 42 H 0.115 0.885 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.299 -8.103 19.747 21.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.125 3.875 3 H 0.040 0.960 4 C -0.557 4.557 5 H 0.083 0.917 6 C -0.138 4.138 7 N -0.519 5.519 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.173 5.173 13 C -0.117 4.117 14 C 0.043 3.957 15 N -0.154 5.154 16 N -0.097 5.097 17 C -0.052 4.052 18 C -0.020 4.020 19 C -0.170 4.170 20 C -0.224 4.224 21 C -0.139 4.139 22 N -0.160 5.160 23 H 0.253 0.747 24 N -0.168 5.168 25 C -0.056 4.056 26 H 0.148 0.852 27 C -0.177 4.177 28 C -0.189 4.189 29 H 0.131 0.869 30 C -0.183 4.183 31 H 0.106 0.894 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.047 0.953 38 H 0.164 0.836 39 H 0.158 0.842 40 H 0.184 0.816 41 H 0.147 0.853 42 H 0.133 0.867 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.270 -7.427 18.964 20.809 hybrid contribution 1.451 -1.301 -0.632 2.049 sum 5.721 -8.728 18.332 21.095 Atomic orbital electron populations 1.21982 0.96498 0.99237 1.02500 1.19409 0.93601 0.92480 0.82023 0.96043 1.21075 1.32288 1.12830 0.89514 0.91690 1.24897 0.94968 0.94998 0.98959 1.69937 1.35859 1.22465 1.23596 0.86429 0.78602 0.79474 0.82788 1.19775 1.20919 1.21008 1.59101 1.10672 1.47990 0.99508 1.22506 0.85178 1.00670 1.03339 1.23327 0.97677 0.90881 0.83788 1.74899 1.19923 1.10329 1.10257 1.74420 1.18193 1.20868 0.96243 1.21425 1.00899 0.92424 0.90471 1.17015 1.10225 0.90286 0.84495 1.20965 1.05567 0.98552 0.91871 1.20840 1.08754 0.95698 0.97076 1.21908 1.08298 0.97755 0.85936 1.42463 1.53166 1.14244 1.06102 0.74710 1.45754 1.41504 1.23620 1.05916 1.22048 0.95765 0.80828 1.06989 0.85200 1.23673 1.03681 0.95008 0.95290 1.23048 1.00240 0.98241 0.97347 0.86912 1.21481 1.01369 0.99611 0.95815 0.89432 0.95862 0.93603 0.92740 0.92668 0.88293 0.95308 0.83602 0.84159 0.81612 0.85286 0.86722 0.92797 0.90678 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 8.77 37.16 0.33 -3.44 16 2 C 0.23 5.84 1.73 -68.86 -0.12 5.72 16 3 H 0.02 0.63 8.11 -51.93 -0.42 0.21 16 4 C -0.52 -13.65 7.88 -34.44 -0.27 -13.92 16 5 H 0.07 1.64 6.40 -52.49 -0.34 1.30 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -25.05 11.32 55.43 0.63 -24.42 16 8 Si 0.90 20.66 29.54 -169.99 -5.02 15.63 16 9 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.45 -9.53 3.46 -176.04 -0.61 -10.14 16 13 C 0.03 0.55 8.68 60.06 0.52 1.07 16 14 C 0.40 8.37 6.53 -318.69 -2.08 6.29 16 15 N -0.31 -7.28 8.97 30.34 0.27 -7.01 16 16 N -0.26 -5.57 12.22 32.51 0.40 -5.17 16 17 C 0.21 3.87 7.90 -153.73 -1.21 2.65 16 18 C 0.09 1.40 6.95 -82.38 -0.57 0.83 16 19 C -0.14 -1.99 10.80 -39.41 -0.43 -2.41 16 20 C -0.20 -2.18 10.83 -39.91 -0.43 -2.61 16 21 C -0.01 -0.06 11.92 -16.66 -0.20 -0.26 16 22 N -0.56 -6.39 5.93 -9.51 -0.06 -6.45 16 23 H 0.41 3.96 3.71 -40.82 -0.15 3.81 16 24 N -0.47 -8.07 3.15 -107.68 -0.34 -8.41 16 25 C 0.05 0.60 3.98 -67.93 -0.27 0.33 16 26 H 0.13 1.36 8.14 -51.93 -0.42 0.93 16 27 C -0.14 -1.55 7.46 -26.72 -0.20 -1.74 16 28 C -0.17 -1.65 4.96 -90.62 -0.45 -2.10 16 29 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 30 C -0.13 -0.77 9.92 37.16 0.37 -0.40 16 31 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 1.19 5.42 -51.93 -0.28 0.91 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.05 0.80 4.67 -51.93 -0.24 0.56 16 36 H 0.10 1.82 6.10 -51.93 -0.32 1.50 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 39 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 41 H 0.13 1.87 7.02 -51.93 -0.36 1.50 16 42 H 0.11 0.96 8.05 -51.93 -0.42 0.54 16 43 H 0.05 0.29 6.35 -51.93 -0.33 -0.04 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.36 7.90 -51.93 -0.41 -0.05 16 LS Contribution 352.51 15.07 5.31 5.31 Total: -1.00 -32.18 352.51 -10.63 -42.81 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.10 Total: 6.19 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -5.11 Total: -8.34 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: 0.29 Total: -61.61 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.18 -10.63 -42.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460433551.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.962 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds